Wall clock time and date at job start Wed Apr 1 2020 00:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 C 1.50701 * 109.46959 * 239.99989 * 2 1 3 5 5 N 1.34768 * 119.99901 * 60.00093 * 4 2 1 6 6 O 1.21289 * 119.99636 * 240.00204 * 4 2 1 7 7 N 1.46904 * 109.46696 * 119.99936 * 2 1 3 8 8 C 1.48525 * 111.00365 * 295.40486 * 7 2 1 9 9 C 1.54312 * 104.67610 * 200.80944 * 8 7 2 10 10 H 1.08997 * 111.82448 * 262.42974 * 9 8 7 11 11 C 1.54164 * 108.86135 * 137.48774 * 9 8 7 12 12 C 1.54848 * 104.32185 * 223.67697 * 11 9 8 13 13 C 1.56413 * 103.22894 * 37.77585 * 12 11 9 14 14 C 1.54171 * 103.57458 * 322.70229 * 13 12 11 15 15 N 1.46499 * 111.79705 * 259.86488 * 14 13 12 16 16 C 1.34784 * 119.99971 * 298.65767 * 15 14 13 17 17 O 1.21274 * 119.99897 * 359.72827 * 16 15 14 18 18 C 1.50695 * 119.99635 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46975 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00155 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99670 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00050 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99898 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47184 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47541 * 119.99901 * 24 22 20 27 27 H 1.48497 * 109.47123 * 239.99909 * 24 22 20 28 28 C 1.48533 * 110.99739 * 179.97438 * 7 2 1 29 29 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46837 * 300.00391 * 1 2 3 31 31 H 1.08993 * 109.46601 * 59.99916 * 1 2 3 32 32 H 0.96999 * 120.00484 * 359.97438 * 5 4 2 33 33 H 0.97009 * 119.99926 * 179.97438 * 5 4 2 34 34 H 1.08999 * 110.39683 * 319.61440 * 8 7 2 35 35 H 1.09006 * 110.39235 * 81.89406 * 8 7 2 36 36 H 1.08998 * 110.46450 * 342.38948 * 11 9 8 37 37 H 1.09002 * 110.45967 * 104.97108 * 11 9 8 38 38 H 1.09004 * 110.75370 * 156.49006 * 12 11 9 39 39 H 1.08999 * 110.76113 * 279.68610 * 12 11 9 40 40 H 1.08995 * 112.03693 * 203.64554 * 13 12 11 41 41 H 1.09001 * 109.60069 * 80.59011 * 13 12 11 42 42 H 0.96999 * 119.99984 * 118.65614 * 15 14 13 43 43 H 1.09005 * 109.47403 * 300.00056 * 18 16 15 44 44 H 1.09002 * 109.47422 * 60.00295 * 18 16 15 45 45 H 0.97005 * 120.00072 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.39886 * 40.39201 * 28 7 2 47 47 H 1.09004 * 110.39696 * 277.99044 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.7068 -0.2500 -2.4545 6 8 2.7297 -1.6966 -1.1191 7 7 2.0197 -0.6925 1.1995 8 6 1.6362 0.0421 2.4321 9 6 2.6234 -0.4573 3.5079 10 1 2.1887 -1.2460 4.1219 11 6 3.1002 0.7468 4.3442 12 6 4.6260 0.5293 4.4937 13 6 5.0433 -0.0484 3.1014 14 6 3.8579 -0.9558 2.7162 15 7 4.1444 -2.3676 2.9830 16 6 5.1674 -2.9784 2.3528 17 8 5.8476 -2.3607 1.5613 18 6 5.4623 -4.4304 2.6278 19 16 6.8836 -4.9554 1.6375 20 6 7.0029 -6.6393 2.1421 21 1 6.3046 -7.0377 2.8633 22 6 7.9943 -7.4538 1.6127 23 7 8.8450 -6.9684 0.7334 24 14 8.1204 -9.2393 2.1471 25 1 7.0540 -9.5362 3.1371 26 1 7.9584 -10.1227 0.9645 27 1 9.4493 -9.4783 2.7652 28 6 3.5045 -0.7129 1.2335 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8899 32 1 1.1489 0.5385 -2.5435 33 1 2.0304 -0.7071 -3.2466 34 1 1.7470 1.1163 2.2841 35 1 0.6110 -0.1980 2.7139 36 1 2.8979 1.6800 3.8185 37 1 2.6177 0.7468 5.3217 38 1 5.1334 1.4739 4.6901 39 1 4.8379 -0.1927 5.2823 40 1 5.9642 -0.6285 3.1587 41 1 5.1486 0.7658 2.3843 42 1 3.5979 -2.8626 3.6131 43 1 5.6891 -4.5611 3.6860 44 1 4.5934 -5.0338 2.3652 45 1 9.5376 -7.5377 0.3631 46 1 3.9053 0.2441 0.8995 47 1 3.8876 -1.5234 0.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111600316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:49 Heat of formation + Delta-G solvation = -65.316445 kcal Electronic energy + Delta-G solvation = -28617.499482 eV Core-core repulsion = 24733.198755 eV Total energy + Delta-G solvation = -3884.300727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99266 -39.53652 -38.12945 -35.84512 -33.98852 -33.36021 -32.33949 -31.58349 -30.47826 -28.95357 -27.05953 -25.92398 -25.37412 -24.34626 -22.19493 -21.32397 -19.99585 -19.90903 -19.10016 -17.78612 -17.59365 -17.16774 -16.52814 -15.90274 -15.60850 -15.52869 -14.93249 -14.79957 -14.72595 -14.32489 -14.24974 -13.94753 -13.50949 -13.29834 -13.03726 -12.81258 -12.55611 -12.46328 -12.39555 -12.17790 -11.90173 -11.74147 -11.45996 -11.22725 -11.14824 -11.00940 -10.93629 -10.91816 -10.84102 -10.68258 -10.64272 -9.82720 -9.78003 -9.70648 -9.10688 -8.98935 -8.65720 -8.53637 -8.10450 -6.37710 -6.12942 -3.81600 2.55799 3.15640 3.17343 3.27237 3.29571 3.34528 3.40537 3.77564 3.84876 4.16752 4.29222 4.32439 4.55240 4.60636 4.71618 4.83229 4.99422 5.07349 5.12813 5.17118 5.21705 5.22074 5.30942 5.32475 5.37976 5.47416 5.52708 5.58596 5.67645 5.71252 5.77472 5.85468 5.89365 5.98510 6.04870 6.17984 6.24849 6.29251 6.34973 6.64663 6.69779 6.74991 6.99879 7.18679 7.68588 7.93073 8.19841 8.44390 8.82970 9.32442 10.94550 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.003075 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.628463 B = 9103.198102 C =10503.538906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 H 0.066 0.934 4 C 0.514 3.486 5 N -0.859 5.859 6 O -0.506 6.506 7 N -0.489 5.489 8 C 0.037 3.963 9 C -0.095 4.095 10 H 0.094 0.906 11 C -0.116 4.116 12 C -0.124 4.124 13 C -0.125 4.125 14 C 0.180 3.820 15 N -0.718 5.718 16 C 0.536 3.464 17 O -0.513 6.513 18 C -0.152 4.152 19 S -0.059 6.059 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.281 1.281 28 C 0.028 3.972 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.403 0.597 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.397 0.603 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.267 0.733 46 H 0.043 0.957 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.078 21.030 3.194 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 H 0.084 0.916 4 C 0.297 3.703 5 N -0.425 5.425 6 O -0.378 6.378 7 N -0.213 5.213 8 C -0.091 4.091 9 C -0.114 4.114 10 H 0.112 0.888 11 C -0.154 4.154 12 C -0.162 4.162 13 C -0.163 4.163 14 C 0.092 3.908 15 N -0.371 5.371 16 C 0.322 3.678 17 O -0.387 6.387 18 C -0.303 4.303 19 S 0.168 5.832 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.137 4.137 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.099 4.099 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.234 0.766 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.563 20.840 1.994 27.980 hybrid contribution -0.863 -1.033 1.008 1.682 sum -19.426 19.807 3.002 27.906 Atomic orbital electron populations 1.21775 0.91951 1.03638 1.02369 1.21785 0.97405 0.96192 0.90642 0.91640 1.20448 0.80161 0.84876 0.84855 1.43841 1.56589 1.33951 1.08122 1.90857 1.35711 1.25096 1.86144 1.65375 1.10503 1.45877 0.99559 1.23328 0.99629 0.96025 0.90069 1.22707 0.94465 0.98097 0.96144 0.88798 1.22451 0.96287 0.96932 0.99722 1.22789 0.94939 1.00777 0.97701 1.23010 0.98695 0.98317 0.96319 1.21328 0.93656 0.81912 0.93911 1.45874 1.33922 1.10354 1.46971 1.20192 0.79249 0.88566 0.79795 1.90684 1.48407 1.66177 1.33424 1.23526 1.06488 0.94658 1.05635 1.85376 1.31845 1.10925 1.55053 1.22929 1.19073 0.96132 1.29987 0.90970 1.24982 0.94789 0.99158 0.94723 1.70037 1.16552 1.36248 1.27537 0.86132 0.78057 0.82911 0.78477 1.19635 1.20615 1.20650 1.23798 0.86208 1.02664 0.97266 0.90969 0.91384 0.91834 0.77527 0.76597 0.93433 0.89876 0.91345 0.91228 0.91491 0.91343 0.89637 0.91252 0.76875 0.89516 0.89327 0.92353 0.93883 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.05 37.16 0.34 -0.58 16 2 C 0.05 0.50 2.25 -68.86 -0.16 0.35 16 3 H 0.07 0.53 7.97 -51.93 -0.41 0.11 16 4 C 0.51 6.30 7.16 -10.99 -0.08 6.22 16 5 N -0.86 -6.57 8.77 31.22 0.27 -6.30 16 6 O -0.51 -9.26 14.90 5.55 0.08 -9.18 16 7 N -0.49 -5.84 4.99 -223.52 -1.12 -6.96 16 8 C 0.04 0.33 5.07 -2.24 -0.01 0.31 16 9 C -0.09 -0.89 3.70 -88.32 -0.33 -1.22 16 10 H 0.09 0.82 7.72 -51.93 -0.40 0.42 16 11 C -0.12 -0.90 6.38 -25.15 -0.16 -1.06 16 12 C -0.12 -1.20 6.93 -23.92 -0.17 -1.36 16 13 C -0.12 -1.62 5.77 -24.28 -0.14 -1.76 16 14 C 0.18 2.37 0.92 -129.50 -0.12 2.25 16 15 N -0.72 -10.79 5.25 -45.47 -0.24 -11.03 16 16 C 0.54 10.73 6.88 -10.98 -0.08 10.66 16 17 O -0.51 -12.08 13.30 5.56 0.07 -12.01 16 18 C -0.15 -3.31 6.16 36.00 0.22 -3.08 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.79 9.50 30.94 0.29 -15.50 16 21 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -27.00 13.22 55.49 0.73 -26.27 16 24 Si 0.92 22.14 29.55 -169.99 -5.02 17.11 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.03 0.42 4.32 -2.22 -0.01 0.42 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.36 7.06 -51.93 -0.37 0.00 16 31 H 0.06 0.27 7.56 -51.93 -0.39 -0.13 16 32 H 0.40 1.56 8.25 -40.82 -0.34 1.22 16 33 H 0.40 2.99 8.93 -40.82 -0.36 2.63 16 34 H 0.05 0.36 6.95 -51.93 -0.36 -0.01 16 35 H 0.08 0.61 7.68 -51.93 -0.40 0.22 16 36 H 0.07 0.48 7.18 -51.93 -0.37 0.11 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.39 6.72 -51.93 -0.35 1.04 16 41 H 0.07 0.88 7.20 -51.93 -0.37 0.50 16 42 H 0.40 4.91 8.31 -40.82 -0.34 4.57 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.04 0.62 7.03 -51.93 -0.37 0.26 16 47 H 0.12 2.44 4.80 -51.93 -0.25 2.19 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -38.77 379.78 -9.35 -48.12 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.16 Total: 6.99 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.49 Total: -2.32 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.35 Total: -50.55 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.16 Total: -21.19 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.77 -9.35 -48.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.195 kcal (2) G-P(sol) polarization free energy of solvation -38.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds