Wall clock time and date at job start Wed Apr 1 2020 00:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 C 1.50701 * 109.46959 * 239.99989 * 2 1 3 5 5 N 1.34768 * 119.99901 * 60.00093 * 4 2 1 6 6 O 1.21289 * 119.99636 * 240.00204 * 4 2 1 7 7 N 1.46904 * 109.46696 * 119.99936 * 2 1 3 8 8 C 1.48525 * 111.00365 * 295.40486 * 7 2 1 9 9 C 1.54312 * 104.67610 * 200.80944 * 8 7 2 10 10 H 1.08997 * 111.82448 * 262.42974 * 9 8 7 11 11 C 1.54164 * 108.86135 * 137.48774 * 9 8 7 12 12 C 1.54848 * 104.32185 * 223.67697 * 11 9 8 13 13 C 1.56413 * 103.22894 * 37.77585 * 12 11 9 14 14 C 1.54171 * 103.57458 * 322.70229 * 13 12 11 15 15 N 1.46499 * 111.79705 * 259.86488 * 14 13 12 16 16 C 1.34784 * 119.99971 * 298.65767 * 15 14 13 17 17 O 1.21274 * 119.99897 * 359.72827 * 16 15 14 18 18 C 1.50695 * 119.99635 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46975 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00155 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99670 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00050 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99898 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47184 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47541 * 119.99901 * 24 22 20 27 27 H 1.48497 * 109.47123 * 239.99909 * 24 22 20 28 28 C 1.48533 * 110.99739 * 179.97438 * 7 2 1 29 29 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46837 * 300.00391 * 1 2 3 31 31 H 1.08993 * 109.46601 * 59.99916 * 1 2 3 32 32 H 0.96999 * 120.00484 * 359.97438 * 5 4 2 33 33 H 0.97009 * 119.99926 * 179.97438 * 5 4 2 34 34 H 1.08999 * 110.39683 * 319.61440 * 8 7 2 35 35 H 1.09006 * 110.39235 * 81.89406 * 8 7 2 36 36 H 1.08998 * 110.46450 * 342.38948 * 11 9 8 37 37 H 1.09002 * 110.45967 * 104.97108 * 11 9 8 38 38 H 1.09004 * 110.75370 * 156.49006 * 12 11 9 39 39 H 1.08999 * 110.76113 * 279.68610 * 12 11 9 40 40 H 1.08995 * 112.03693 * 203.64554 * 13 12 11 41 41 H 1.09001 * 109.60069 * 80.59011 * 13 12 11 42 42 H 0.96999 * 119.99984 * 118.65614 * 15 14 13 43 43 H 1.09005 * 109.47403 * 300.00056 * 18 16 15 44 44 H 1.09002 * 109.47422 * 60.00295 * 18 16 15 45 45 H 0.97005 * 120.00072 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.39886 * 40.39201 * 28 7 2 47 47 H 1.09004 * 110.39696 * 277.99044 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.7068 -0.2500 -2.4545 6 8 2.7297 -1.6966 -1.1191 7 7 2.0197 -0.6925 1.1995 8 6 1.6362 0.0421 2.4321 9 6 2.6234 -0.4573 3.5079 10 1 2.1887 -1.2460 4.1219 11 6 3.1002 0.7468 4.3442 12 6 4.6260 0.5293 4.4937 13 6 5.0433 -0.0484 3.1014 14 6 3.8579 -0.9558 2.7162 15 7 4.1444 -2.3676 2.9830 16 6 5.1674 -2.9784 2.3528 17 8 5.8476 -2.3607 1.5613 18 6 5.4623 -4.4304 2.6278 19 16 6.8836 -4.9554 1.6375 20 6 7.0029 -6.6393 2.1421 21 1 6.3046 -7.0377 2.8633 22 6 7.9943 -7.4538 1.6127 23 7 8.8450 -6.9684 0.7334 24 14 8.1204 -9.2393 2.1471 25 1 7.0540 -9.5362 3.1371 26 1 7.9584 -10.1227 0.9645 27 1 9.4493 -9.4783 2.7652 28 6 3.5045 -0.7129 1.2335 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8899 32 1 1.1489 0.5385 -2.5435 33 1 2.0304 -0.7071 -3.2466 34 1 1.7470 1.1163 2.2841 35 1 0.6110 -0.1980 2.7139 36 1 2.8979 1.6800 3.8185 37 1 2.6177 0.7468 5.3217 38 1 5.1334 1.4739 4.6901 39 1 4.8379 -0.1927 5.2823 40 1 5.9642 -0.6285 3.1587 41 1 5.1486 0.7658 2.3843 42 1 3.5979 -2.8626 3.6131 43 1 5.6891 -4.5611 3.6860 44 1 4.5934 -5.0338 2.3652 45 1 9.5376 -7.5377 0.3631 46 1 3.9053 0.2441 0.8995 47 1 3.8876 -1.5234 0.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111600316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:48 Heat of formation + Delta-G solvation = -98.989618 kcal Electronic energy + Delta-G solvation = -28618.959660 eV Core-core repulsion = 24733.198755 eV Total energy + Delta-G solvation = -3885.760905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99927 -40.62506 -39.46645 -36.74846 -34.87982 -34.70206 -34.58275 -32.35041 -31.62024 -30.29977 -28.10928 -27.60043 -26.76550 -25.13251 -23.28329 -22.19172 -21.14097 -20.77344 -20.30332 -19.74598 -18.41974 -18.23588 -17.58710 -17.38104 -16.89878 -16.63742 -16.46415 -16.10765 -16.04845 -15.64901 -15.30715 -15.20647 -14.75299 -14.54903 -14.30026 -14.07195 -13.70398 -13.61240 -13.18842 -13.14892 -13.05108 -12.92391 -12.89977 -12.76399 -12.53250 -12.35322 -12.15024 -12.03445 -11.79874 -11.70742 -11.58434 -11.45508 -11.16870 -10.85133 -10.71198 -10.64746 -10.27968 -9.96740 -9.41003 -8.67251 -8.35677 -6.13740 1.25997 1.40116 1.45686 1.57676 1.64388 1.68810 2.25543 2.32006 2.42539 2.95699 2.97969 3.29163 3.35225 3.49179 3.81032 3.93443 3.96833 4.04342 4.13952 4.15846 4.27482 4.29512 4.37568 4.39960 4.46458 4.47666 4.58931 4.70059 4.74858 4.82925 4.89458 4.94491 4.98769 5.12948 5.15658 5.24055 5.26165 5.28276 5.40024 5.45668 5.65622 5.80339 5.89983 5.98425 6.18705 6.49745 6.58881 7.04926 7.33527 7.39201 8.74110 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.003075 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.628463 B = 9103.198102 C =10503.538906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.052 3.948 3 H 0.088 0.912 4 C 0.503 3.497 5 N -0.837 5.837 6 O -0.579 6.579 7 N -0.507 5.507 8 C 0.040 3.960 9 C -0.087 4.087 10 H 0.107 0.893 11 C -0.104 4.104 12 C -0.117 4.117 13 C -0.128 4.128 14 C 0.170 3.830 15 N -0.696 5.696 16 C 0.535 3.465 17 O -0.556 6.556 18 C -0.128 4.128 19 S -0.150 6.150 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.271 1.271 28 C 0.037 3.963 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.418 0.582 33 H 0.404 0.596 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.412 0.588 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.271 0.729 46 H 0.037 0.963 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.573 22.393 5.533 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 H 0.106 0.894 4 C 0.288 3.712 5 N -0.403 5.403 6 O -0.458 6.458 7 N -0.232 5.232 8 C -0.087 4.087 9 C -0.106 4.106 10 H 0.125 0.875 11 C -0.142 4.142 12 C -0.155 4.155 13 C -0.167 4.167 14 C 0.083 3.917 15 N -0.349 5.349 16 C 0.321 3.679 17 O -0.433 6.433 18 C -0.279 4.279 19 S 0.077 5.923 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.196 1.196 28 C -0.092 4.092 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.250 0.750 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.249 0.751 43 H 0.127 0.873 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.149 22.277 4.340 31.713 hybrid contribution 0.156 -1.331 0.196 1.354 sum -21.993 20.946 4.536 30.708 Atomic orbital electron populations 1.21789 0.89065 1.03156 1.04905 1.21946 0.99379 0.96302 0.88415 0.89410 1.21162 0.79126 0.84146 0.86752 1.43688 1.55533 1.34061 1.07000 1.90847 1.39131 1.28516 1.87271 1.65292 1.08138 1.48012 1.01750 1.23473 1.00414 0.96889 0.87933 1.22778 0.92424 0.99131 0.96314 0.87464 1.22444 0.94245 0.96558 1.00905 1.22770 0.96849 1.01010 0.94857 1.22963 0.96926 0.97867 0.98964 1.21636 0.95686 0.80307 0.94044 1.45660 1.32052 1.11480 1.45671 1.19949 0.80212 0.87886 0.79877 1.90670 1.50338 1.66818 1.35509 1.23362 1.03332 0.96037 1.05200 1.85569 1.36386 1.12342 1.58007 1.23242 1.19713 0.96076 1.30397 0.90098 1.26175 0.93993 1.04717 0.94415 1.70204 1.17353 1.38439 1.28871 0.84865 0.78697 0.75709 0.78399 1.18038 1.19881 1.19613 1.23446 0.88568 1.00105 0.97103 0.92888 0.89134 0.89071 0.75017 0.76472 0.91297 0.87478 0.89787 0.88585 0.90186 0.91594 0.93826 0.91531 0.75068 0.87310 0.88297 0.91986 0.94480 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.05 71.99 0.65 -0.64 16 2 C 0.05 0.91 2.25 44.17 0.10 1.01 16 3 H 0.09 1.16 7.97 -2.39 -0.02 1.14 16 4 C 0.50 12.60 7.16 87.66 0.63 13.23 16 5 N -0.84 -12.35 8.77 -173.53 -1.52 -13.87 16 6 O -0.58 -22.94 14.90 -3.06 -0.05 -22.99 16 7 N -0.51 -11.54 4.99 -861.07 -4.30 -15.84 16 8 C 0.04 0.54 5.07 86.43 0.44 0.98 16 9 C -0.09 -1.36 3.70 -9.31 -0.03 -1.39 16 10 H 0.11 1.42 7.72 -2.39 -0.02 1.41 16 11 C -0.10 -1.16 6.38 31.62 0.20 -0.96 16 12 C -0.12 -2.00 6.93 32.41 0.22 -1.78 16 13 C -0.13 -3.41 5.77 32.18 0.19 -3.23 16 14 C 0.17 4.46 0.92 5.10 0.00 4.46 16 15 N -0.70 -21.23 5.25 -416.17 -2.19 -23.41 16 16 C 0.54 22.62 6.88 87.65 0.60 23.22 16 17 O -0.56 -28.42 13.30 -3.01 -0.04 -28.46 16 18 C -0.13 -5.75 6.16 71.23 0.44 -5.31 16 19 S -0.15 -9.02 20.57 -56.49 -1.16 -10.18 16 20 C -0.55 -33.18 9.50 67.95 0.65 -32.53 16 21 H 0.08 4.59 7.80 -2.91 -0.02 4.57 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -58.60 13.22 21.65 0.29 -58.31 16 24 Si 1.00 45.74 29.55 68.60 2.03 47.77 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 28 C 0.04 1.13 4.32 86.44 0.37 1.50 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.52 7.06 -2.39 -0.02 0.51 16 31 H 0.09 0.39 7.56 -2.39 -0.02 0.37 16 32 H 0.42 2.41 8.25 -92.71 -0.76 1.64 16 33 H 0.40 6.08 8.93 -92.70 -0.83 5.25 16 34 H 0.07 0.68 6.95 -2.39 -0.02 0.66 16 35 H 0.11 1.02 7.68 -2.38 -0.02 1.00 16 36 H 0.08 0.74 7.18 -2.39 -0.02 0.72 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 1.52 6.72 -2.39 -0.02 1.50 16 41 H 0.07 1.75 7.20 -2.39 -0.02 1.74 16 42 H 0.41 9.79 8.31 -92.71 -0.77 9.02 16 43 H 0.11 4.35 8.14 -2.39 -0.02 4.33 16 44 H 0.10 4.20 8.14 -2.39 -0.02 4.18 16 45 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 46 H 0.04 1.13 7.03 -2.39 -0.02 1.11 16 47 H 0.06 2.77 4.80 -2.39 -0.01 2.76 16 Total: -1.00 -94.13 379.78 -3.35 -97.48 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -1.34 Total: 28.10 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.93 Total: -0.29 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -7.72 Total: -111.43 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.09 Total: -51.45 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -94.13 -3.35 -97.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.506 kcal (2) G-P(sol) polarization free energy of solvation -94.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds