Wall clock time and date at job start Wed Apr 1 2020 00:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47549 * 2 1 4 4 C 1.46767 * 124.35329 * 270.00090 * 3 2 1 5 5 C 1.54823 * 105.49565 * 197.05648 * 4 3 2 6 6 C 1.54621 * 101.60818 * 334.56529 * 5 4 3 7 7 H 1.09001 * 110.48975 * 143.56614 * 6 5 4 8 8 N 1.46902 * 110.49122 * 266.08332 * 6 5 4 9 9 C 1.46903 * 110.99697 * 287.42288 * 8 6 5 10 10 C 1.53233 * 109.33720 * 187.25327 * 9 8 6 11 11 N 1.47079 * 108.51984 * 306.16638 * 10 9 8 12 12 C 1.34776 * 120.88224 * 231.18929 * 11 10 9 13 13 O 1.21280 * 120.00392 * 359.97438 * 12 11 10 14 14 C 1.50710 * 120.00207 * 180.02562 * 12 11 10 15 15 S 1.80996 * 109.47252 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00049 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00003 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00065 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00029 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47096 * 89.99841 * 20 18 16 22 22 H 1.48499 * 109.46976 * 329.99586 * 20 18 16 23 23 H 1.48504 * 109.46753 * 209.99644 * 20 18 16 24 24 C 1.47082 * 118.23913 * 51.46270 * 11 10 9 25 25 C 1.46897 * 110.99735 * 51.72190 * 8 6 5 26 26 C 1.34417 * 124.34957 * 90.02378 * 3 2 1 27 27 O 1.21285 * 124.94297 * 359.53782 * 26 3 2 28 28 H 1.08999 * 109.46379 * 59.99784 * 1 2 3 29 29 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46832 * 300.00378 * 1 2 3 31 31 H 1.09007 * 109.47485 * 239.99927 * 2 1 3 32 32 H 1.09006 * 109.47183 * 120.00433 * 2 1 3 33 33 H 1.08999 * 110.24286 * 316.03817 * 4 3 2 34 34 H 1.09001 * 110.24386 * 77.94053 * 4 3 2 35 35 H 1.09005 * 111.08125 * 216.48650 * 5 4 3 36 36 H 1.09004 * 111.01595 * 92.61968 * 5 4 3 37 37 H 1.08997 * 109.49111 * 67.28875 * 9 8 6 38 38 H 1.09003 * 109.51406 * 307.21978 * 9 8 6 39 39 H 1.08997 * 109.62951 * 186.45854 * 10 9 8 40 40 H 1.09000 * 109.79489 * 65.96876 * 10 9 8 41 41 H 1.08991 * 109.47131 * 59.99494 * 14 12 11 42 42 H 1.09003 * 109.46218 * 299.99773 * 14 12 11 43 43 H 0.96995 * 120.00279 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.62941 * 68.24697 * 24 11 10 45 45 H 1.09002 * 109.63068 * 188.83115 * 24 11 10 46 46 H 1.09003 * 109.49284 * 292.70922 * 25 8 6 47 47 H 1.08998 * 109.49384 * 52.76057 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2945 2.1619 -1.2117 5 6 3.1775 3.3463 -0.7483 6 6 2.7704 3.4751 0.7378 7 1 3.6324 3.7462 1.3474 8 7 1.6994 4.4684 0.8934 9 6 2.2147 5.8315 0.7079 10 6 1.1153 6.8411 1.0547 11 7 -0.0828 6.5164 0.2659 12 6 -0.7087 7.4621 -0.4626 13 8 -0.2853 8.5985 -0.4731 14 6 -1.9353 7.1076 -1.2632 15 16 -2.5390 8.5798 -2.1258 16 6 -3.9340 7.8966 -2.9576 17 1 -4.1751 6.8507 -2.8380 18 6 -4.7230 8.7026 -3.7664 19 7 -5.7655 8.1923 -4.3874 20 14 -4.3056 10.5115 -3.9739 21 1 -3.3868 10.6783 -5.1285 22 1 -3.6468 11.0120 -2.7407 23 1 -5.5514 11.2822 -4.2172 24 6 -0.5836 5.1338 0.2978 25 6 0.5861 4.1901 -0.0238 26 6 2.2717 2.0960 1.1098 27 8 2.1216 1.6942 2.2442 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.8321 1.5530 -1.9384 34 1 1.3638 2.5297 -1.6436 35 1 2.9352 4.2551 -1.2993 36 1 4.2363 3.1051 -0.8433 37 1 2.5190 5.9672 -0.3299 38 1 3.0723 5.9887 1.3620 39 1 1.4528 7.8482 0.8103 40 1 0.8812 6.7812 2.1176 41 1 -2.7106 6.7346 -0.5940 42 1 -1.6832 6.3375 -1.9922 43 1 -6.3167 8.7555 -4.9530 44 1 -0.9768 4.9097 1.2894 45 1 -1.3698 5.0118 -0.4472 46 1 0.9131 4.3487 -1.0514 47 1 0.2629 3.1565 0.0996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112630149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:51 Heat of formation + Delta-G solvation = -43.647464 kcal Electronic energy + Delta-G solvation = -28362.448205 eV Core-core repulsion = 24479.087115 eV Total energy + Delta-G solvation = -3883.361089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49350 -39.79262 -37.91119 -36.62401 -35.07041 -32.96957 -32.46380 -31.61555 -29.94067 -29.20094 -28.17159 -25.79873 -25.55801 -24.39498 -23.50389 -22.52627 -21.14271 -19.61011 -19.00143 -17.83897 -17.52264 -17.06949 -16.57348 -16.20078 -15.68022 -15.52172 -15.16509 -15.04793 -14.97282 -14.73383 -14.09356 -13.96991 -13.84842 -13.81234 -13.42562 -13.30856 -13.18070 -12.98850 -12.81556 -12.60595 -12.28911 -12.15573 -12.02355 -11.90984 -11.55611 -11.48594 -11.45279 -11.27568 -11.22219 -11.03159 -10.61769 -10.14470 -9.88144 -9.51507 -9.18440 -9.03086 -8.90404 -8.52266 -8.49424 -6.94986 -6.31503 -4.03496 2.12589 2.55153 2.66668 2.88916 3.14462 3.30818 3.48410 3.49365 3.56859 3.87595 3.98955 4.30547 4.34412 4.39881 4.49374 4.61641 4.64452 4.75363 4.76060 4.87792 4.95133 4.98342 5.00325 5.05349 5.07663 5.10877 5.15446 5.30081 5.31790 5.33798 5.36755 5.43996 5.49031 5.60175 5.67626 5.71142 5.82058 5.85270 5.94714 6.13515 6.40688 6.48344 6.56946 6.72244 7.42680 7.84179 7.91478 8.38412 8.39242 9.14727 10.77705 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.002679 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.811434 B =10447.458368 C =11482.306809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.098 3.902 5 C -0.169 4.169 6 C 0.055 3.945 7 H 0.117 0.883 8 N -0.513 5.513 9 C 0.043 3.957 10 C 0.119 3.881 11 N -0.620 5.620 12 C 0.534 3.466 13 O -0.519 6.519 14 C -0.122 4.122 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.235 1.235 23 H -0.274 1.274 24 C 0.113 3.887 25 C 0.033 3.967 26 C 0.530 3.470 27 O -0.515 6.515 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.050 0.950 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.322 -15.901 7.881 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.356 5.356 4 C -0.025 4.025 5 C -0.209 4.209 6 C -0.057 4.057 7 H 0.135 0.865 8 N -0.238 5.238 9 C -0.085 4.085 10 C -0.004 4.004 11 N -0.357 5.357 12 C 0.322 3.678 13 O -0.393 6.393 14 C -0.272 4.272 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.159 1.159 23 H -0.199 1.199 24 C -0.011 4.011 25 C -0.096 4.096 26 C 0.316 3.684 27 O -0.389 6.389 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.068 0.932 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.487 -14.512 8.840 25.855 hybrid contribution -0.303 -0.749 -1.243 1.482 sum 19.185 -15.261 7.598 25.664 Atomic orbital electron populations 1.22178 0.95433 1.02621 1.02776 1.21365 0.94661 0.80759 1.03090 1.48365 1.66049 1.13996 1.07205 1.22270 0.99820 0.92861 0.87553 1.23335 1.01109 0.99279 0.97159 1.22503 0.95739 0.91345 0.96139 0.86511 1.61976 1.07477 1.01724 1.52662 1.22561 0.97941 0.87219 1.00777 1.21615 0.84152 0.98924 0.95742 1.48134 1.29276 1.09734 1.48542 1.20302 0.84324 0.84593 0.78568 1.90689 1.65715 1.19816 1.63095 1.23305 0.97418 1.04845 1.01643 1.84804 1.35559 1.11905 1.59286 1.22301 1.11989 0.99896 1.32689 0.89416 1.24709 0.93729 0.98978 0.93855 1.69935 1.15759 1.36731 1.29255 0.86739 0.79010 0.84780 0.81357 1.19223 1.15887 1.19926 1.21919 0.95695 0.80144 1.03298 1.22849 0.91863 1.00194 0.94686 1.20564 0.76687 0.86806 0.84358 1.90723 1.52101 1.75000 1.21068 0.92197 0.91272 0.91998 0.90354 0.90008 0.90183 0.90582 0.88807 0.89209 0.93621 0.89166 0.88327 0.90796 0.88476 0.88695 0.91920 0.90430 0.88675 0.93171 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.12 0.80 6.65 -4.05 -0.03 0.77 16 3 N -0.62 -4.73 2.53 -172.19 -0.44 -5.16 16 4 C 0.10 0.54 6.36 -2.94 -0.02 0.52 16 5 C -0.17 -0.93 6.07 -24.92 -0.15 -1.08 16 6 C 0.05 0.44 3.12 -67.72 -0.21 0.22 16 7 H 0.12 0.85 8.01 -51.93 -0.42 0.43 16 8 N -0.51 -4.69 4.61 -226.06 -1.04 -5.73 16 9 C 0.04 0.37 5.35 -3.70 -0.02 0.35 16 10 C 0.12 1.33 6.60 -3.61 -0.02 1.31 16 11 N -0.62 -8.24 3.00 -172.18 -0.52 -8.75 16 12 C 0.53 9.44 7.73 -10.98 -0.08 9.35 16 13 O -0.52 -10.98 15.31 5.56 0.09 -10.90 16 14 C -0.12 -2.31 4.52 36.01 0.16 -2.15 16 15 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 16 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 17 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 20 Si 0.86 21.57 27.74 -169.99 -4.72 16.85 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.23 -5.92 6.74 56.52 0.38 -5.53 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.11 1.22 6.53 -3.36 -0.02 1.20 16 25 C 0.03 0.30 3.86 -3.46 -0.01 0.28 16 26 C 0.53 5.44 6.56 -10.86 -0.07 5.37 16 27 O -0.52 -7.43 17.60 5.55 0.10 -7.33 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.43 6.26 -51.93 -0.32 0.11 16 35 H 0.09 0.54 5.90 -51.93 -0.31 0.24 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.40 6.93 -51.93 -0.36 0.04 16 38 H 0.09 0.62 8.02 -51.93 -0.42 0.20 16 39 H 0.10 1.22 7.06 -51.93 -0.37 0.85 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.75 7.99 -51.92 -0.41 1.33 16 42 H 0.09 1.66 7.67 -51.91 -0.40 1.26 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.10 1.01 6.02 -51.93 -0.31 0.70 16 46 H 0.05 0.44 5.89 -51.93 -0.31 0.13 16 47 H 0.09 0.79 6.16 -51.93 -0.32 0.47 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -35.71 378.71 -9.24 -44.94 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.31 Total: -2.16 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 0.11 Total: 3.59 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -1.22 Total: -45.16 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.85 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.71 -9.24 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.295 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds