Wall clock time and date at job start Wed Apr 1 2020 00:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46869 * 2 1 4 4 C 1.46763 * 124.34873 * 269.99547 * 3 2 1 5 5 C 1.54689 * 105.53664 * 196.90427 * 4 3 2 6 6 C 1.54632 * 101.66750 * 334.74587 * 5 4 3 7 7 H 1.09001 * 110.48469 * 265.90222 * 6 5 4 8 8 N 1.46897 * 110.48661 * 143.39461 * 6 5 4 9 9 C 1.46901 * 110.99785 * 300.50017 * 8 6 5 10 10 C 1.53235 * 109.33860 * 187.25568 * 9 8 6 11 11 N 1.47078 * 108.52195 * 306.17178 * 10 9 8 12 12 C 1.34781 * 120.88047 * 231.18787 * 11 10 9 13 13 O 1.21282 * 119.99899 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99913 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47112 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99795 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00535 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99588 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99580 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00172 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47032 * 90.00232 * 20 18 16 22 22 H 1.48505 * 109.46990 * 210.00195 * 20 18 16 23 23 H 1.48501 * 109.46880 * 330.00088 * 20 18 16 24 24 C 1.47076 * 118.23956 * 51.45643 * 11 10 9 25 25 C 1.46894 * 111.00269 * 64.80402 * 8 6 5 26 26 C 1.34415 * 124.34987 * 89.98190 * 3 2 1 27 27 O 1.21280 * 124.94467 * 359.63693 * 26 3 2 28 28 H 1.09001 * 109.47027 * 300.00349 * 1 2 3 29 29 H 1.09002 * 109.46767 * 59.99924 * 1 2 3 30 30 H 1.08992 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46753 * 240.00190 * 2 1 3 32 32 H 1.08991 * 109.47132 * 119.99768 * 2 1 3 33 33 H 1.09005 * 110.24677 * 316.00152 * 4 3 2 34 34 H 1.09007 * 110.24386 * 77.99786 * 4 3 2 35 35 H 1.08994 * 111.08558 * 216.62367 * 5 4 3 36 36 H 1.09001 * 110.93916 * 92.79855 * 5 4 3 37 37 H 1.08999 * 109.49388 * 67.29471 * 9 8 6 38 38 H 1.08996 * 109.51627 * 307.22983 * 9 8 6 39 39 H 1.09010 * 109.62930 * 186.46434 * 10 9 8 40 40 H 1.09002 * 109.79194 * 65.97628 * 10 9 8 41 41 H 1.08997 * 109.46892 * 60.00089 * 14 12 11 42 42 H 1.08998 * 109.46626 * 299.99823 * 14 12 11 43 43 H 0.97001 * 119.99647 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.62549 * 68.25517 * 24 11 10 45 45 H 1.08994 * 109.63123 * 188.82902 * 24 11 10 46 46 H 1.09000 * 109.49097 * 292.70606 * 25 8 6 47 47 H 1.08999 * 109.49501 * 52.78647 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1733 3.3480 -0.7492 6 6 2.7687 3.4757 0.7378 7 1 1.9742 4.2127 0.8550 8 7 3.9318 3.8409 1.5575 9 6 4.9922 2.8304 1.4463 10 6 6.1061 3.1514 2.4485 11 7 6.5438 4.5387 2.2320 12 6 7.8490 4.8355 2.0734 13 8 8.6802 3.9531 2.1089 14 6 8.2755 6.2641 1.8533 15 16 10.0755 6.3362 1.6781 16 6 10.2906 8.0687 1.4398 17 1 9.4321 8.7239 1.4360 18 6 11.5633 8.5912 1.2559 19 7 11.7239 9.8853 1.0774 20 14 13.0481 7.4577 1.2618 21 1 13.3135 6.9825 -0.1199 22 1 14.2329 8.1966 1.7673 23 1 12.7782 6.2930 2.1426 24 6 5.5202 5.5943 2.1990 25 6 4.4288 5.1764 1.2009 26 6 2.2708 2.0965 1.1097 27 8 2.1216 1.6944 2.2442 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.8328 1.5532 -1.9382 34 1 1.3637 2.5305 -1.6432 35 1 2.9278 4.2561 -1.2997 36 1 4.2324 3.1091 -0.8462 37 1 5.3989 2.8397 0.4351 38 1 4.5803 1.8449 1.6636 39 1 6.9457 2.4739 2.2922 40 1 5.7306 3.0405 3.4657 41 1 7.9692 6.8701 2.7060 42 1 7.8062 6.6478 0.9475 43 1 12.6134 10.2505 0.9493 44 1 5.0862 5.7145 3.1917 45 1 5.9721 6.5327 1.8779 46 1 4.8434 5.1530 0.1931 47 1 3.6080 5.8925 1.2404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112630150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:54 Heat of formation + Delta-G solvation = -44.812391 kcal Electronic energy + Delta-G solvation = -27904.937565 eV Core-core repulsion = 24021.525960 eV Total energy + Delta-G solvation = -3883.411604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33549 -39.79162 -37.84669 -36.73161 -35.08006 -33.02436 -32.44713 -31.70294 -29.83272 -29.20576 -28.04781 -25.77170 -25.56102 -24.05122 -23.79855 -22.69422 -21.01156 -19.62497 -18.93573 -17.76970 -17.29663 -17.17842 -16.72921 -16.02106 -15.68941 -15.47487 -15.29608 -15.00149 -14.92342 -14.58283 -14.38295 -14.00237 -13.89354 -13.82031 -13.56877 -13.31043 -13.19652 -12.81199 -12.69358 -12.58599 -12.35080 -12.32757 -12.00134 -11.85720 -11.60000 -11.52069 -11.39242 -11.26621 -11.18869 -11.01659 -10.59368 -10.06874 -9.86470 -9.47616 -9.18280 -9.01377 -8.87729 -8.49943 -8.45346 -6.92938 -6.29881 -4.01569 2.17911 2.49565 2.69322 2.92460 3.16102 3.32216 3.41735 3.50296 3.58692 3.85320 4.10542 4.29389 4.32324 4.42108 4.52924 4.55595 4.66890 4.71258 4.78856 4.85984 4.88826 4.98210 5.01001 5.04768 5.09283 5.10622 5.16936 5.22530 5.29200 5.37763 5.39945 5.43798 5.51193 5.64336 5.68404 5.71898 5.74702 5.90839 5.97488 6.09280 6.45547 6.51026 6.62834 6.70230 7.47481 7.83840 7.93141 8.40319 8.42922 9.16418 10.79252 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.002172 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.211397 B =12888.738162 C =13036.104512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.623 5.623 4 C 0.107 3.893 5 C -0.173 4.173 6 C 0.056 3.944 7 H 0.121 0.879 8 N -0.513 5.513 9 C 0.039 3.961 10 C 0.121 3.879 11 N -0.621 5.621 12 C 0.534 3.466 13 O -0.520 6.520 14 C -0.121 4.121 15 S -0.143 6.143 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.112 3.888 25 C 0.041 3.959 26 C 0.524 3.476 27 O -0.509 6.509 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.047 0.953 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.973 -15.760 -5.704 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.359 5.359 4 C -0.017 4.017 5 C -0.212 4.212 6 C -0.056 4.056 7 H 0.138 0.862 8 N -0.237 5.237 9 C -0.089 4.089 10 C -0.002 4.002 11 N -0.357 5.357 12 C 0.322 3.678 13 O -0.394 6.394 14 C -0.271 4.271 15 S 0.083 5.917 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.011 4.011 25 C -0.087 4.087 26 C 0.310 3.690 27 O -0.383 6.383 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.848 -17.191 -4.554 29.749 hybrid contribution -0.185 0.880 -1.148 1.458 sum -24.032 -16.311 -5.703 29.600 Atomic orbital electron populations 1.22161 0.95694 1.02459 1.02470 1.21353 0.94433 0.80867 1.03260 1.48327 1.66478 1.13842 1.07297 1.22053 0.99448 0.92703 0.87478 1.23397 1.01485 0.99284 0.97067 1.22494 0.95761 0.96428 0.90959 0.86175 1.61921 1.06158 1.02600 1.53038 1.22584 0.91968 0.95616 0.98726 1.21569 0.96409 0.83416 0.98777 1.48144 1.06090 1.07865 1.73606 1.20314 0.81242 0.90931 0.75357 1.90688 1.50513 1.48998 1.49226 1.23301 1.03336 0.95246 1.05257 1.84813 0.99017 1.12657 1.95166 1.22305 0.97626 0.89833 1.57070 0.89381 1.24712 0.98502 0.94885 0.93217 1.69937 1.23707 1.11172 1.46829 0.86737 0.82458 0.82288 0.80386 1.19245 1.19935 1.15913 1.21935 0.88100 0.91010 1.00080 1.22625 0.98161 0.90070 0.97870 1.20576 0.77033 0.86951 0.84461 1.90739 1.52036 1.74620 1.20875 0.92159 0.92446 0.91337 0.90305 0.89927 0.90258 0.90916 0.88690 0.89343 0.93764 0.89819 0.88561 0.90752 0.88431 0.88637 0.91947 0.90303 0.88558 0.93513 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.12 0.74 6.65 -4.04 -0.03 0.71 16 3 N -0.62 -4.52 2.93 -172.28 -0.51 -5.03 16 4 C 0.11 0.50 7.35 -3.01 -0.02 0.48 16 5 C -0.17 -0.95 5.62 -24.98 -0.14 -1.09 16 6 C 0.06 0.44 3.07 -67.72 -0.21 0.23 16 7 H 0.12 0.81 8.13 -51.93 -0.42 0.38 16 8 N -0.51 -4.96 4.67 -226.07 -1.06 -6.01 16 9 C 0.04 0.42 4.95 -3.70 -0.02 0.40 16 10 C 0.12 1.55 6.60 -3.61 -0.02 1.52 16 11 N -0.62 -8.62 3.00 -172.18 -0.52 -9.14 16 12 C 0.53 9.70 7.73 -10.98 -0.08 9.62 16 13 O -0.52 -11.35 15.31 5.56 0.09 -11.27 16 14 C -0.12 -2.33 4.52 36.01 0.16 -2.17 16 15 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 16 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 17 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 20 Si 0.86 21.73 27.74 -169.99 -4.71 17.02 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 24 C 0.11 1.19 6.53 -3.37 -0.02 1.17 16 25 C 0.04 0.35 5.29 -3.47 -0.02 0.33 16 26 C 0.52 5.27 5.98 -10.86 -0.06 5.20 16 27 O -0.51 -7.22 17.36 5.56 0.10 -7.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.60 5.85 -51.93 -0.30 0.29 16 37 H 0.04 0.47 6.28 -51.93 -0.33 0.14 16 38 H 0.08 0.94 6.59 -51.93 -0.34 0.60 16 39 H 0.10 1.35 7.06 -51.92 -0.37 0.98 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.76 7.99 -51.92 -0.41 1.35 16 42 H 0.10 1.69 7.67 -51.92 -0.40 1.29 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.10 0.98 6.02 -51.93 -0.31 0.67 16 46 H 0.05 0.40 7.53 -51.93 -0.39 0.01 16 47 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -36.13 383.33 -9.42 -45.54 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.49 Total: -2.59 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 0.13 Total: 4.02 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -1.30 Total: -45.76 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.13 -9.42 -45.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.732 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds