Wall clock time and date at job start Wed Apr 1 2020 00:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46869 * 2 1 4 4 C 1.46763 * 124.34873 * 269.99547 * 3 2 1 5 5 C 1.54689 * 105.53664 * 196.90427 * 4 3 2 6 6 C 1.54632 * 101.66750 * 334.74587 * 5 4 3 7 7 H 1.09001 * 110.48469 * 265.90222 * 6 5 4 8 8 N 1.46897 * 110.48661 * 143.39461 * 6 5 4 9 9 C 1.46901 * 110.99785 * 300.50017 * 8 6 5 10 10 C 1.53235 * 109.33860 * 187.25568 * 9 8 6 11 11 N 1.47078 * 108.52195 * 306.17178 * 10 9 8 12 12 C 1.34781 * 120.88047 * 231.18787 * 11 10 9 13 13 O 1.21282 * 119.99899 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99913 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47112 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99795 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00535 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99588 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99580 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00172 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47032 * 90.00232 * 20 18 16 22 22 H 1.48505 * 109.46990 * 210.00195 * 20 18 16 23 23 H 1.48501 * 109.46880 * 330.00088 * 20 18 16 24 24 C 1.47076 * 118.23956 * 51.45643 * 11 10 9 25 25 C 1.46894 * 111.00269 * 64.80402 * 8 6 5 26 26 C 1.34415 * 124.34987 * 89.98190 * 3 2 1 27 27 O 1.21280 * 124.94467 * 359.63693 * 26 3 2 28 28 H 1.09001 * 109.47027 * 300.00349 * 1 2 3 29 29 H 1.09002 * 109.46767 * 59.99924 * 1 2 3 30 30 H 1.08992 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46753 * 240.00190 * 2 1 3 32 32 H 1.08991 * 109.47132 * 119.99768 * 2 1 3 33 33 H 1.09005 * 110.24677 * 316.00152 * 4 3 2 34 34 H 1.09007 * 110.24386 * 77.99786 * 4 3 2 35 35 H 1.08994 * 111.08558 * 216.62367 * 5 4 3 36 36 H 1.09001 * 110.93916 * 92.79855 * 5 4 3 37 37 H 1.08999 * 109.49388 * 67.29471 * 9 8 6 38 38 H 1.08996 * 109.51627 * 307.22983 * 9 8 6 39 39 H 1.09010 * 109.62930 * 186.46434 * 10 9 8 40 40 H 1.09002 * 109.79194 * 65.97628 * 10 9 8 41 41 H 1.08997 * 109.46892 * 60.00089 * 14 12 11 42 42 H 1.08998 * 109.46626 * 299.99823 * 14 12 11 43 43 H 0.97001 * 119.99647 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.62549 * 68.25517 * 24 11 10 45 45 H 1.08994 * 109.63123 * 188.82902 * 24 11 10 46 46 H 1.09000 * 109.49097 * 292.70606 * 25 8 6 47 47 H 1.08999 * 109.49501 * 52.78647 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1733 3.3480 -0.7492 6 6 2.7687 3.4757 0.7378 7 1 1.9742 4.2127 0.8550 8 7 3.9318 3.8409 1.5575 9 6 4.9922 2.8304 1.4463 10 6 6.1061 3.1514 2.4485 11 7 6.5438 4.5387 2.2320 12 6 7.8490 4.8355 2.0734 13 8 8.6802 3.9531 2.1089 14 6 8.2755 6.2641 1.8533 15 16 10.0755 6.3362 1.6781 16 6 10.2906 8.0687 1.4398 17 1 9.4321 8.7239 1.4360 18 6 11.5633 8.5912 1.2559 19 7 11.7239 9.8853 1.0774 20 14 13.0481 7.4577 1.2618 21 1 13.3135 6.9825 -0.1199 22 1 14.2329 8.1966 1.7673 23 1 12.7782 6.2930 2.1426 24 6 5.5202 5.5943 2.1990 25 6 4.4288 5.1764 1.2009 26 6 2.2708 2.0965 1.1097 27 8 2.1216 1.6944 2.2442 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.8328 1.5532 -1.9382 34 1 1.3637 2.5305 -1.6432 35 1 2.9278 4.2561 -1.2997 36 1 4.2324 3.1091 -0.8462 37 1 5.3989 2.8397 0.4351 38 1 4.5803 1.8449 1.6636 39 1 6.9457 2.4739 2.2922 40 1 5.7306 3.0405 3.4657 41 1 7.9692 6.8701 2.7060 42 1 7.8062 6.6478 0.9475 43 1 12.6134 10.2505 0.9493 44 1 5.0862 5.7145 3.1917 45 1 5.9721 6.5327 1.8779 46 1 4.8434 5.1530 0.1931 47 1 3.6080 5.8925 1.2404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:53 Heat of formation + Delta-G solvation = -70.962672 kcal Electronic energy + Delta-G solvation = -27906.071526 eV Core-core repulsion = 24021.525960 eV Total energy + Delta-G solvation = -3884.545565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03286 -40.96642 -38.87419 -37.47017 -36.03159 -34.66127 -33.70912 -32.68568 -30.88752 -30.01836 -28.84476 -27.84119 -26.52037 -24.86306 -24.36837 -23.43011 -21.93212 -20.36884 -20.17427 -19.45198 -18.36837 -17.89348 -17.58574 -17.16343 -16.91086 -16.78352 -16.71500 -16.01069 -15.86527 -15.60154 -15.15503 -15.11869 -14.92445 -14.66159 -14.60612 -14.46224 -14.40846 -13.90234 -13.52303 -13.41752 -13.31220 -13.24532 -13.02088 -12.96092 -12.79467 -12.70149 -12.51294 -12.37299 -12.19390 -12.03398 -11.90435 -11.85522 -11.16351 -10.97750 -10.80418 -10.50844 -9.90508 -9.74840 -9.31023 -8.99559 -8.50628 -6.21366 0.96992 1.31273 1.43392 1.47812 1.50086 1.54296 1.96319 2.01933 2.25465 2.66622 2.74518 2.87644 3.27653 3.47852 3.60906 3.76708 3.88457 3.92524 3.98679 4.06530 4.14103 4.17447 4.22302 4.28153 4.33302 4.39777 4.47134 4.47847 4.56796 4.63223 4.67013 4.75686 4.79385 4.82062 4.90354 4.92783 4.99486 5.08542 5.25099 5.39615 5.56755 5.72004 5.78095 5.88476 6.10179 6.12771 6.24617 6.94804 7.04194 7.15445 8.61452 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.002172 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.211397 B =12888.738162 C =13036.104512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.620 5.620 4 C 0.105 3.895 5 C -0.163 4.163 6 C 0.057 3.943 7 H 0.137 0.863 8 N -0.526 5.526 9 C 0.054 3.946 10 C 0.121 3.879 11 N -0.607 5.607 12 C 0.535 3.465 13 O -0.565 6.565 14 C -0.104 4.104 15 S -0.179 6.179 16 C -0.526 4.526 17 H 0.065 0.935 18 C 0.047 3.953 19 N -0.915 5.915 20 Si 0.912 3.088 21 H -0.262 1.262 22 H -0.260 1.260 23 H -0.239 1.239 24 C 0.103 3.897 25 C 0.047 3.953 26 C 0.513 3.487 27 O -0.564 6.564 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.277 0.723 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.662 -16.035 -7.394 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.005 4.005 3 N -0.354 5.354 4 C -0.018 4.018 5 C -0.202 4.202 6 C -0.055 4.055 7 H 0.154 0.846 8 N -0.251 5.251 9 C -0.074 4.074 10 C -0.002 4.002 11 N -0.341 5.341 12 C 0.323 3.677 13 O -0.443 6.443 14 C -0.255 4.255 15 S 0.047 5.953 16 C -0.673 4.673 17 H 0.084 0.916 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.163 1.163 24 C -0.019 4.019 25 C -0.081 4.081 26 C 0.300 3.700 27 O -0.442 6.442 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.597 -17.454 -6.289 31.613 hybrid contribution 0.124 0.933 -0.618 1.126 sum -25.473 -16.521 -6.907 31.137 Atomic orbital electron populations 1.22094 0.94977 1.03172 1.01798 1.21491 0.95016 0.80476 1.03517 1.48503 1.65121 1.14191 1.07616 1.22290 1.00599 0.92362 0.86504 1.23374 1.00851 1.00718 0.95294 1.22555 0.95278 0.95476 0.92160 0.84556 1.61860 1.06169 1.02712 1.54340 1.22337 0.91508 0.95650 0.97952 1.21609 0.96557 0.82383 0.99603 1.48136 1.05245 1.09249 1.71502 1.20084 0.82347 0.89816 0.75472 1.90674 1.52091 1.49774 1.51779 1.23258 0.98554 0.96712 1.06926 1.84782 1.05072 1.10090 1.95317 1.22433 0.97071 0.91341 1.56484 0.91640 1.25526 1.01157 0.96195 0.93025 1.70009 1.24751 1.12617 1.47906 0.85899 0.79684 0.80451 0.80535 1.18652 1.18420 1.16313 1.22262 0.87860 0.90231 1.01558 1.22642 0.98308 0.90002 0.97137 1.21042 0.76662 0.88032 0.84256 1.90704 1.54575 1.75880 1.23008 0.94587 0.91171 0.90033 0.87697 0.92014 0.88713 0.88689 0.86199 0.90532 0.93451 0.90727 0.90231 0.90700 0.86970 0.86587 0.91396 0.89401 0.87861 0.93022 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.24 71.98 0.74 -0.76 16 2 C 0.12 1.26 6.65 86.38 0.57 1.83 16 3 N -0.62 -7.94 2.93 -817.55 -2.40 -10.34 16 4 C 0.10 0.62 7.35 86.91 0.64 1.26 16 5 C -0.16 -1.23 5.62 31.73 0.18 -1.05 16 6 C 0.06 0.76 3.07 44.91 0.14 0.89 16 7 H 0.14 1.38 8.13 -2.39 -0.02 1.37 16 8 N -0.53 -9.09 4.67 -869.15 -4.06 -13.15 16 9 C 0.05 1.11 4.95 86.38 0.43 1.54 16 10 C 0.12 3.05 6.60 86.35 0.57 3.62 16 11 N -0.61 -16.11 3.00 -817.05 -2.45 -18.56 16 12 C 0.54 19.05 7.73 87.66 0.68 19.73 16 13 O -0.56 -24.81 15.31 -3.04 -0.05 -24.86 16 14 C -0.10 -3.88 4.52 71.24 0.32 -3.56 16 15 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 16 C -0.53 -30.18 10.04 67.96 0.68 -29.49 16 17 H 0.07 3.93 8.03 -2.91 -0.02 3.91 16 18 C 0.05 2.71 5.50 84.86 0.47 3.17 16 19 N -0.91 -55.07 13.97 21.65 0.30 -54.77 16 20 Si 0.91 44.83 27.74 68.60 1.90 46.74 16 21 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 24 C 0.10 1.93 6.53 86.50 0.57 2.49 16 25 C 0.05 0.65 5.29 86.54 0.46 1.11 16 26 C 0.51 9.88 5.98 87.90 0.53 10.41 16 27 O -0.56 -16.38 17.36 -3.03 -0.05 -16.43 16 28 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.93 7.93 -2.39 -0.02 0.91 16 33 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 35 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 0.81 5.85 -2.39 -0.01 0.79 16 37 H 0.05 0.94 6.28 -2.39 -0.01 0.92 16 38 H 0.07 1.69 6.59 -2.39 -0.02 1.67 16 39 H 0.08 2.28 7.06 -2.38 -0.02 2.27 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 3.88 7.99 -2.40 -0.02 3.86 16 42 H 0.12 3.87 7.67 -2.40 -0.02 3.85 16 43 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.10 1.81 6.02 -2.39 -0.01 1.80 16 46 H 0.05 0.70 7.53 -2.39 -0.02 0.68 16 47 H 0.12 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -80.57 383.33 0.04 -80.53 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.93 Total: 9.72 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.96 Total: 11.19 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -8.60 Total: -96.81 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.10 Total: -41.29 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -80.57 0.04 -80.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.570 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds