Wall clock time and date at job start Wed Apr 1 2020 00:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00044 * 2 1 4 4 N 1.46505 * 109.46934 * 124.99968 * 3 2 1 5 5 C 1.34776 * 119.99811 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00138 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99804 * 179.97438 * 5 4 3 8 8 H 1.08992 * 109.47284 * 300.00452 * 7 5 4 9 9 C 1.53002 * 109.46958 * 60.00369 * 7 5 4 10 10 N 1.46906 * 109.46922 * 180.02562 * 7 5 4 11 11 C 1.46904 * 110.99841 * 299.30291 * 10 7 5 12 12 C 1.53240 * 109.33739 * 172.74962 * 11 10 7 13 13 N 1.47085 * 108.52154 * 53.82625 * 12 11 10 14 14 C 1.34773 * 120.87493 * 128.79510 * 13 12 11 15 15 O 1.21280 * 119.99552 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00579 * 0.02562 * 14 13 12 17 17 S 1.81000 * 109.47400 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00188 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99918 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00368 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99616 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47128 * 90.00042 * 22 20 18 24 24 H 1.48499 * 109.47303 * 209.99935 * 22 20 18 25 25 H 1.48496 * 109.47264 * 330.00058 * 22 20 18 26 26 C 1.47075 * 118.23896 * 308.81668 * 13 12 11 27 27 C 1.46896 * 110.99895 * 175.00371 * 10 7 5 28 28 H 1.07994 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99621 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99964 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46978 * 5.00174 * 3 2 1 32 32 H 1.09001 * 109.47324 * 244.99727 * 3 2 1 33 33 H 0.96993 * 120.00140 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.47142 * 59.99773 * 9 7 5 35 35 H 1.09004 * 109.47006 * 179.97438 * 9 7 5 36 36 H 1.09002 * 109.47097 * 299.99808 * 9 7 5 37 37 H 1.09000 * 109.49336 * 292.70649 * 11 10 7 38 38 H 1.08991 * 109.49364 * 52.78839 * 11 10 7 39 39 H 1.09007 * 109.62526 * 294.11763 * 12 11 10 40 40 H 1.08997 * 109.79066 * 173.63286 * 12 11 10 41 41 H 1.09001 * 109.46965 * 300.00247 * 16 14 13 42 42 H 1.09005 * 109.47217 * 59.99696 * 16 14 13 43 43 H 0.97001 * 120.00144 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.62535 * 291.47568 * 26 13 12 45 45 H 1.08998 * 109.62753 * 170.89763 * 26 13 12 46 46 H 1.08999 * 109.49203 * 307.21161 * 27 10 7 47 47 H 1.08998 * 109.49713 * 67.26346 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7783 2.4089 1.3335 6 8 3.7145 3.3558 0.5784 7 6 4.7348 2.4367 2.4977 8 1 4.1768 2.3389 3.4289 9 6 5.7247 1.2768 2.3722 10 7 5.4685 3.7094 2.4984 11 6 6.2471 3.8688 1.2629 12 6 6.8492 5.2773 1.2207 13 7 7.6027 5.5008 2.4639 14 6 8.8756 5.9423 2.4313 15 8 9.4823 6.1207 3.4662 16 6 9.5453 6.2144 1.1089 17 16 11.2364 6.7917 1.3964 18 6 11.7671 7.0252 -0.2674 19 1 11.0918 6.8160 -1.0840 20 6 13.0529 7.4779 -0.5288 21 7 13.8760 7.7323 0.4664 22 14 13.6152 7.7261 -2.2927 23 1 13.3068 9.1145 -2.7199 24 1 15.0792 7.4942 -2.3829 25 1 12.9068 6.7669 -3.1777 26 6 6.9304 5.2291 3.7435 27 6 6.3252 3.8225 3.6863 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6214 1.4026 -0.9314 33 1 3.0451 0.5744 1.7352 34 1 6.2827 1.3745 1.4410 35 1 6.4168 1.2971 3.2141 36 1 5.1799 0.3326 2.3720 37 1 7.0482 3.1300 1.2399 38 1 5.5952 3.7259 0.4012 39 1 6.0505 6.0146 1.1390 40 1 7.5190 5.3669 0.3654 41 1 9.5690 5.2985 0.5185 42 1 8.9871 6.9799 0.5697 43 1 14.7745 8.0490 0.2838 44 1 6.1395 5.9618 3.9043 45 1 7.6546 5.2835 4.5563 46 1 5.7298 3.6461 4.5822 47 1 7.1249 3.0840 3.6299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:07 Heat of formation + Delta-G solvation = -55.727791 kcal Electronic energy + Delta-G solvation = -27347.480952 eV Core-core repulsion = 23463.596020 eV Total energy + Delta-G solvation = -3883.884931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64669 -40.74969 -38.89664 -36.76635 -36.06508 -34.59807 -33.87710 -32.76311 -31.68285 -30.48197 -27.80266 -27.47686 -27.34836 -24.79868 -24.68730 -22.33756 -21.53606 -20.71773 -20.15805 -19.38935 -18.32084 -18.01398 -17.44223 -16.96897 -16.88226 -16.79763 -16.56614 -16.26090 -15.90174 -15.80834 -15.48912 -15.20960 -14.97471 -14.55890 -14.49071 -14.45684 -14.11091 -13.63258 -13.44971 -13.36721 -13.20544 -13.17898 -13.16301 -12.90300 -12.83780 -12.62084 -12.31466 -12.15706 -12.01473 -11.96302 -11.72438 -11.15459 -10.92844 -10.81863 -10.46489 -10.29197 -10.03312 -9.80601 -9.27201 -8.68699 -8.35685 -6.14175 1.17792 1.23484 1.41473 1.43898 1.53349 1.55265 1.62775 2.04194 2.24658 2.26181 2.88797 2.98230 3.22979 3.61660 3.71652 3.82884 3.88341 3.98936 4.00513 4.15946 4.17467 4.19402 4.19893 4.28609 4.36584 4.42529 4.54960 4.58000 4.61880 4.71630 4.77132 4.79100 4.87755 4.88602 4.99442 5.01349 5.18646 5.39639 5.40572 5.48365 5.65930 5.79046 5.86041 5.95312 6.18664 6.26605 6.58341 7.05315 7.09651 7.27778 8.73612 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.002143 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.645267 B =13062.814099 C =14246.443531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.147 3.853 4 N -0.714 5.714 5 C 0.516 3.484 6 O -0.562 6.562 7 C 0.068 3.932 8 H 0.138 0.862 9 C -0.181 4.181 10 N -0.524 5.524 11 C 0.039 3.961 12 C 0.113 3.887 13 N -0.609 5.609 14 C 0.534 3.466 15 O -0.564 6.564 16 C -0.125 4.125 17 S -0.146 6.146 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.259 1.259 26 C 0.113 3.887 27 C 0.051 3.949 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.034 0.966 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.272 0.728 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.215 -20.214 2.018 35.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.023 3.977 4 N -0.368 5.368 5 C 0.303 3.697 6 O -0.440 6.440 7 C -0.043 4.043 8 H 0.155 0.845 9 C -0.239 4.239 10 N -0.249 5.249 11 C -0.089 4.089 12 C -0.010 4.010 13 N -0.343 5.343 14 C 0.322 3.678 15 O -0.442 6.442 16 C -0.276 4.276 17 S 0.081 5.919 18 C -0.696 4.696 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.183 1.183 26 C -0.009 4.009 27 C -0.077 4.077 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.052 0.948 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.137 0.863 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -28.570 -18.840 3.077 34.360 hybrid contribution 0.601 -0.668 -1.859 2.065 sum -27.968 -19.508 1.217 34.121 Atomic orbital electron populations 1.24170 0.95777 1.03153 0.96874 1.22949 0.96303 0.97470 1.03142 1.20374 0.91543 0.96469 0.89272 1.45879 1.40237 1.19710 1.30927 1.20801 0.80949 0.81925 0.86063 1.90654 1.68443 1.36581 1.48344 1.21747 0.94804 0.89232 0.98536 0.84486 1.22407 1.00042 0.98653 1.02839 1.61838 1.28367 1.32461 1.02223 1.22641 0.96308 0.95275 0.94707 1.21948 0.95625 0.97681 0.85724 1.48189 1.11356 1.65754 1.09016 1.20079 0.81582 0.76045 0.90065 1.90662 1.64593 1.53115 1.35872 1.23369 1.00596 1.05293 0.98363 1.85513 1.07388 1.86138 1.12822 1.23193 1.02104 1.52174 0.92083 0.90085 1.26122 0.95436 0.93979 1.03506 1.70178 1.07417 1.43251 1.33785 0.84956 0.77494 0.79093 0.76452 1.19294 1.20097 1.18269 1.21803 0.96444 0.97320 0.85317 1.22503 0.95722 0.95318 0.94169 0.88383 0.86347 0.85229 0.92169 0.91876 0.74711 0.93275 0.90728 0.88764 0.94769 0.87634 0.90096 0.89138 0.87780 0.87802 0.91935 0.89985 0.89911 0.86349 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 14.32 67.78 0.97 0.12 16 2 C -0.18 -1.09 9.63 25.64 0.25 -0.84 16 3 C 0.15 1.60 6.11 85.63 0.52 2.12 16 4 N -0.71 -6.99 5.44 -466.78 -2.54 -9.53 16 5 C 0.52 8.35 6.82 87.66 0.60 8.94 16 6 O -0.56 -14.18 13.91 -3.02 -0.04 -14.22 16 7 C 0.07 0.85 2.77 44.17 0.12 0.97 16 8 H 0.14 0.99 8.06 -2.39 -0.02 0.97 16 9 C -0.18 -1.77 8.41 71.98 0.61 -1.17 16 10 N -0.52 -9.77 4.41 -874.42 -3.85 -13.62 16 11 C 0.04 0.87 4.58 86.38 0.40 1.27 16 12 C 0.11 2.88 6.50 86.35 0.56 3.44 16 13 N -0.61 -18.49 3.01 -817.94 -2.46 -20.95 16 14 C 0.53 21.58 7.73 87.66 0.68 22.25 16 15 O -0.56 -27.32 15.31 -3.03 -0.05 -27.37 16 16 C -0.13 -5.35 4.52 71.24 0.32 -5.03 16 17 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 18 C -0.55 -32.07 9.50 67.95 0.65 -31.43 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.84 5.49 84.86 0.47 1.30 16 21 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 22 Si 1.00 44.40 29.55 68.60 2.03 46.43 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 26 C 0.11 2.80 6.60 86.35 0.57 3.37 16 27 C 0.05 0.90 5.14 86.38 0.44 1.34 16 28 H 0.10 0.56 7.84 -2.91 -0.02 0.54 16 29 H 0.12 0.29 8.06 -2.91 -0.02 0.26 16 30 H 0.13 0.42 8.06 -2.91 -0.02 0.40 16 31 H 0.06 0.81 7.79 -2.39 -0.02 0.79 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.42 1.44 7.88 -92.71 -0.73 0.71 16 34 H 0.05 0.69 6.56 -2.39 -0.02 0.67 16 35 H 0.07 0.76 6.69 -2.38 -0.02 0.74 16 36 H 0.09 0.39 7.56 -2.39 -0.02 0.38 16 37 H 0.03 0.78 6.71 -2.39 -0.02 0.77 16 38 H 0.11 2.57 5.30 -2.39 -0.01 2.55 16 39 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.09 2.30 6.02 -2.39 -0.01 2.29 16 41 H 0.10 4.08 7.66 -2.39 -0.02 4.06 16 42 H 0.10 4.12 8.00 -2.39 -0.02 4.10 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.32 7.06 -2.39 -0.02 2.30 16 46 H 0.12 1.36 8.05 -2.39 -0.02 1.35 16 47 H 0.04 0.76 6.81 -2.39 -0.02 0.75 16 Total: -1.00 -82.46 389.53 -0.40 -82.85 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.25 Total: 15.59 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 7.15 Total: 6.68 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -8.57 Total: -100.44 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -0.09 Total: -41.59 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -82.46 -0.40 -82.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.127 kcal (2) G-P(sol) polarization free energy of solvation -82.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds