Wall clock time and date at job start Wed Apr 1 2020 01:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 5 5 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 6 6 O 1.21278 * 120.00148 * 0.02562 * 5 3 2 7 7 C 1.50701 * 119.99973 * 180.02562 * 5 3 2 8 8 N 1.46899 * 109.47076 * 179.97438 * 7 5 3 9 9 C 1.48563 * 111.00106 * 285.41800 * 8 7 5 10 10 C 1.54377 * 104.59088 * 200.96204 * 9 8 7 11 11 H 1.09002 * 118.15274 * 244.14308 * 10 9 8 12 12 C 1.54261 * 105.06566 * 23.85375 * 10 9 8 13 13 H 1.08996 * 121.78571 * 223.00679 * 12 10 9 14 14 C 1.48563 * 110.99534 * 170.00021 * 8 7 5 15 15 C 1.52999 * 61.46120 * 114.16368 * 12 10 9 16 16 H 1.08998 * 117.44835 * 251.46231 * 15 12 10 17 17 N 1.46500 * 117.44208 * 106.71004 * 15 12 10 18 18 C 1.34776 * 120.00207 * 154.99759 * 17 15 12 19 19 O 1.21279 * 119.99852 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00367 * 180.02562 * 18 17 15 21 21 S 1.81000 * 109.47357 * 180.02562 * 20 18 17 22 22 C 1.76204 * 100.00118 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99629 * 359.97438 * 22 21 20 24 24 C 1.38797 * 120.00060 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99917 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99836 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46955 * 60.00571 * 26 24 22 28 28 H 1.48506 * 109.46946 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47419 * 299.99845 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.09004 * 109.46564 * 89.99966 * 4 3 2 36 36 H 1.08992 * 109.46978 * 209.99640 * 4 3 2 37 37 H 1.08993 * 109.47313 * 330.00169 * 4 3 2 38 38 H 1.09007 * 109.46890 * 300.00316 * 7 5 3 39 39 H 1.09004 * 109.46922 * 59.99684 * 7 5 3 40 40 H 1.08998 * 110.40746 * 319.73904 * 9 8 7 41 41 H 1.08990 * 110.41100 * 82.18063 * 9 8 7 42 42 H 1.09003 * 110.41061 * 277.81559 * 14 8 7 43 43 H 1.08993 * 110.41346 * 40.26381 * 14 8 7 44 44 H 0.97004 * 120.00112 * 335.00428 * 17 15 12 45 45 H 1.09004 * 109.47310 * 300.00294 * 20 18 17 46 46 H 1.08998 * 109.47074 * 60.00239 * 20 18 17 47 47 H 0.97004 * 119.99778 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2430 2.0165 1.1673 6 8 2.0413 1.4446 2.2175 7 6 2.7449 3.4375 1.1673 8 7 2.9077 3.8992 2.5523 9 6 1.5902 4.1840 3.1769 10 6 1.9136 5.1310 4.3524 11 1 1.7144 4.7804 5.3651 12 6 3.2507 5.7998 3.9723 13 1 4.0523 5.9343 4.6986 14 6 3.6227 5.2006 2.5990 15 6 1.9970 6.6720 4.0629 16 1 1.5782 7.0483 3.1296 17 7 1.8815 7.5707 5.2141 18 6 1.1237 8.6820 5.1281 19 8 0.5371 8.9377 4.0979 20 6 1.0053 9.6068 6.3120 21 16 -0.0732 10.9967 5.8865 22 6 -0.0339 11.8904 7.4046 23 1 0.5475 11.5184 8.2353 24 6 -0.7500 13.0724 7.5328 25 7 -1.4588 13.5255 6.5205 26 14 -0.7088 14.0195 9.1424 27 1 0.6899 14.4123 9.4499 28 1 -1.5493 15.2378 9.0214 29 1 -1.2339 13.1618 10.2350 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.3542 2.5857 -1.5833 36 1 3.0645 2.7984 -1.1383 37 1 2.5506 1.3452 -2.0284 38 1 3.7050 3.4837 0.6532 39 1 2.0266 4.0765 0.6536 40 1 0.9296 4.6761 2.4631 41 1 1.1366 3.2635 3.5440 42 1 4.6995 5.0454 2.5311 43 1 3.2801 5.8517 1.7948 44 1 2.3505 7.3661 6.0382 45 1 0.5812 9.0635 7.1565 46 1 1.9930 9.9817 6.5804 47 1 -1.9596 14.3515 6.6102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113891365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:06 Heat of formation + Delta-G solvation = -20.446407 kcal Electronic energy + Delta-G solvation = -26380.108779 eV Core-core repulsion = 22497.753763 eV Total energy + Delta-G solvation = -3882.355016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71701 -39.81919 -38.67855 -36.22847 -35.15745 -32.85317 -32.43880 -31.70668 -29.31814 -28.68842 -27.78047 -27.03499 -25.50192 -24.03549 -22.49493 -21.10067 -20.55966 -20.39092 -19.45429 -17.87027 -17.49303 -16.88815 -16.80295 -16.32128 -16.10631 -15.40355 -14.97347 -14.84724 -14.81024 -14.48223 -14.14447 -13.94130 -13.69691 -13.48958 -13.27128 -13.21508 -12.95358 -12.86300 -12.68600 -12.57986 -12.38429 -12.30797 -12.16738 -11.82612 -11.60089 -11.43285 -11.05942 -11.04586 -10.87960 -10.78484 -10.30978 -10.02778 -9.83626 -9.50711 -9.14188 -9.06975 -8.79255 -8.64047 -8.26643 -6.51881 -6.22631 -3.93652 2.30108 2.45952 2.84384 2.87386 3.23303 3.25104 3.28739 3.52254 3.55651 3.70143 4.11423 4.19421 4.39353 4.46494 4.55517 4.61089 4.65856 4.72395 4.73548 4.82261 4.92628 4.98435 4.99525 5.01801 5.11111 5.12613 5.14980 5.22162 5.26195 5.32837 5.50153 5.51588 5.65038 5.76599 5.81583 5.85178 5.89266 5.98301 6.06973 6.10945 6.39501 6.47645 6.58785 6.94505 7.58193 7.61704 7.86112 8.33988 8.51979 9.22619 10.84736 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029266 B = 0.001612 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.497712 B =17360.586772 C =17611.950248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.624 5.624 4 C 0.077 3.923 5 C 0.516 3.484 6 O -0.515 6.515 7 C 0.025 3.975 8 N -0.492 5.492 9 C 0.066 3.934 10 C -0.175 4.175 11 H 0.121 0.879 12 C -0.169 4.169 13 H 0.119 0.881 14 C 0.063 3.937 15 C 0.122 3.878 16 H 0.136 0.864 17 N -0.708 5.708 18 C 0.538 3.462 19 O -0.514 6.514 20 C -0.153 4.153 21 S -0.058 6.058 22 C -0.537 4.537 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.401 0.599 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.982 -25.836 -14.812 31.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.360 5.360 4 C -0.067 4.067 5 C 0.303 3.697 6 O -0.389 6.389 7 C -0.106 4.106 8 N -0.217 5.217 9 C -0.061 4.061 10 C -0.196 4.196 11 H 0.139 0.861 12 C -0.190 4.190 13 H 0.137 0.863 14 C -0.064 4.064 15 C 0.014 3.986 16 H 0.153 0.847 17 N -0.359 5.359 18 C 0.325 3.675 19 O -0.388 6.388 20 C -0.304 4.304 21 S 0.168 5.832 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.236 0.764 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.053 -25.973 -15.754 31.998 hybrid contribution 0.579 0.762 2.048 2.261 sum 10.631 -25.211 -13.706 30.602 Atomic orbital electron populations 1.22128 0.95822 1.02303 1.02392 1.21426 0.94512 0.81980 1.03094 1.47934 1.67149 1.14625 1.06287 1.21833 1.01433 0.97930 0.85468 1.20521 0.77514 0.88381 0.83271 1.90706 1.50242 1.67258 1.30727 1.22189 1.02479 0.93755 0.92200 1.65361 1.15874 1.26391 1.14027 1.22650 0.90069 0.98795 0.94597 1.24603 1.01628 0.93167 1.00189 0.86102 1.23847 0.92559 1.03604 0.98959 0.86299 1.22631 0.99861 0.88798 0.95136 1.22317 0.98838 0.85432 0.92047 0.84678 1.45357 1.51454 1.23926 1.15169 1.20358 0.77344 0.80226 0.89613 1.90696 1.44258 1.72801 1.31003 1.23536 1.06377 1.01924 0.98562 1.85395 1.58771 1.18493 1.20516 1.22830 1.35547 1.10781 0.99367 0.90922 1.24988 0.94488 0.96434 0.97618 1.70006 1.28402 1.21448 1.30425 0.86217 0.78290 0.78853 0.82100 1.19930 1.20797 1.19921 0.92626 0.92147 0.91559 0.89831 0.90656 0.92427 0.90935 0.90850 0.87734 0.91337 0.93522 0.88487 0.89137 0.93034 0.76428 0.89007 0.89014 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.11 0.69 6.17 -4.04 -0.02 0.67 16 3 N -0.62 -4.22 2.87 -181.58 -0.52 -4.74 16 4 C 0.08 0.25 10.29 59.85 0.62 0.87 16 5 C 0.52 4.92 7.52 -10.98 -0.08 4.83 16 6 O -0.52 -6.96 14.80 5.56 0.08 -6.88 16 7 C 0.03 0.19 3.87 -4.98 -0.02 0.17 16 8 N -0.49 -4.87 4.98 -231.40 -1.15 -6.02 16 9 C 0.07 0.72 5.75 -2.18 -0.01 0.71 16 10 C -0.18 -1.90 7.22 -87.06 -0.63 -2.53 16 11 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 12 C -0.17 -1.65 6.91 -89.24 -0.62 -2.27 16 13 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 14 C 0.06 0.54 6.25 -2.18 -0.01 0.53 16 15 C 0.12 1.49 6.19 -65.76 -0.41 1.08 16 16 H 0.14 1.88 7.40 -51.93 -0.38 1.50 16 17 N -0.71 -9.55 5.57 -51.71 -0.29 -9.84 16 18 C 0.54 9.95 7.85 -10.99 -0.09 9.86 16 19 O -0.51 -11.53 15.43 5.56 0.09 -11.45 16 20 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 21 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 22 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 23 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 26 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.66 7.42 -51.93 -0.39 0.27 16 34 H 0.08 0.29 7.89 -51.93 -0.41 -0.12 16 35 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.07 0.16 6.44 -51.93 -0.33 -0.17 16 37 H 0.07 0.14 7.89 -51.93 -0.41 -0.27 16 38 H 0.10 0.57 7.34 -51.93 -0.38 0.18 16 39 H 0.07 0.45 7.73 -51.93 -0.40 0.04 16 40 H 0.05 0.50 7.75 -51.93 -0.40 0.09 16 41 H 0.10 1.19 7.24 -51.93 -0.38 0.81 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.41 7.99 -51.93 -0.41 0.00 16 44 H 0.40 4.24 8.83 -40.82 -0.36 3.88 16 45 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -36.70 401.04 -10.34 -47.03 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.61 Total: 1.14 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.48 Total: -2.49 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -1.23 Total: -45.94 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.17 Total: -18.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.70 -10.34 -47.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113891365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.587 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds