Wall clock time and date at job start Wed Apr 1 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 5 5 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 6 6 O 1.21278 * 120.00148 * 0.02562 * 5 3 2 7 7 C 1.50701 * 119.99973 * 180.02562 * 5 3 2 8 8 N 1.46899 * 109.47076 * 179.97438 * 7 5 3 9 9 C 1.48563 * 111.00106 * 285.41800 * 8 7 5 10 10 C 1.54377 * 104.59088 * 200.96204 * 9 8 7 11 11 H 1.09002 * 118.15274 * 244.14308 * 10 9 8 12 12 C 1.54261 * 105.06566 * 23.85375 * 10 9 8 13 13 H 1.08996 * 121.78571 * 223.00679 * 12 10 9 14 14 C 1.48563 * 110.99534 * 170.00021 * 8 7 5 15 15 C 1.52999 * 61.46120 * 114.16368 * 12 10 9 16 16 H 1.08998 * 117.44835 * 251.46231 * 15 12 10 17 17 N 1.46500 * 117.44208 * 106.71004 * 15 12 10 18 18 C 1.34776 * 120.00207 * 154.99759 * 17 15 12 19 19 O 1.21279 * 119.99852 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00367 * 180.02562 * 18 17 15 21 21 S 1.81000 * 109.47357 * 180.02562 * 20 18 17 22 22 C 1.76204 * 100.00118 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99629 * 359.97438 * 22 21 20 24 24 C 1.38797 * 120.00060 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99917 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99836 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46955 * 60.00571 * 26 24 22 28 28 H 1.48506 * 109.46946 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47419 * 299.99845 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.09004 * 109.46564 * 89.99966 * 4 3 2 36 36 H 1.08992 * 109.46978 * 209.99640 * 4 3 2 37 37 H 1.08993 * 109.47313 * 330.00169 * 4 3 2 38 38 H 1.09007 * 109.46890 * 300.00316 * 7 5 3 39 39 H 1.09004 * 109.46922 * 59.99684 * 7 5 3 40 40 H 1.08998 * 110.40746 * 319.73904 * 9 8 7 41 41 H 1.08990 * 110.41100 * 82.18063 * 9 8 7 42 42 H 1.09003 * 110.41061 * 277.81559 * 14 8 7 43 43 H 1.08993 * 110.41346 * 40.26381 * 14 8 7 44 44 H 0.97004 * 120.00112 * 335.00428 * 17 15 12 45 45 H 1.09004 * 109.47310 * 300.00294 * 20 18 17 46 46 H 1.08998 * 109.47074 * 60.00239 * 20 18 17 47 47 H 0.97004 * 119.99778 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2430 2.0165 1.1673 6 8 2.0413 1.4446 2.2175 7 6 2.7449 3.4375 1.1673 8 7 2.9077 3.8992 2.5523 9 6 1.5902 4.1840 3.1769 10 6 1.9136 5.1310 4.3524 11 1 1.7144 4.7804 5.3651 12 6 3.2507 5.7998 3.9723 13 1 4.0523 5.9343 4.6986 14 6 3.6227 5.2006 2.5990 15 6 1.9970 6.6720 4.0629 16 1 1.5782 7.0483 3.1296 17 7 1.8815 7.5707 5.2141 18 6 1.1237 8.6820 5.1281 19 8 0.5371 8.9377 4.0979 20 6 1.0053 9.6068 6.3120 21 16 -0.0732 10.9967 5.8865 22 6 -0.0339 11.8904 7.4046 23 1 0.5475 11.5184 8.2353 24 6 -0.7500 13.0724 7.5328 25 7 -1.4588 13.5255 6.5205 26 14 -0.7088 14.0195 9.1424 27 1 0.6899 14.4123 9.4499 28 1 -1.5493 15.2378 9.0214 29 1 -1.2339 13.1618 10.2350 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.3542 2.5857 -1.5833 36 1 3.0645 2.7984 -1.1383 37 1 2.5506 1.3452 -2.0284 38 1 3.7050 3.4837 0.6532 39 1 2.0266 4.0765 0.6536 40 1 0.9296 4.6761 2.4631 41 1 1.1366 3.2635 3.5440 42 1 4.6995 5.0454 2.5311 43 1 3.2801 5.8517 1.7948 44 1 2.3505 7.3661 6.0382 45 1 0.5812 9.0635 7.1565 46 1 1.9930 9.9817 6.5804 47 1 -1.9596 14.3515 6.6102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113891365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:05 Heat of formation + Delta-G solvation = -47.724239 kcal Electronic energy + Delta-G solvation = -26381.291635 eV Core-core repulsion = 22497.753763 eV Total energy + Delta-G solvation = -3883.537871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51699 -40.76503 -39.86049 -36.87517 -36.15373 -34.58584 -33.92764 -32.31191 -30.73278 -29.46771 -28.56236 -27.66077 -27.44313 -24.75347 -23.25728 -22.01042 -21.80178 -21.29826 -20.07147 -19.80438 -18.21192 -17.95719 -17.79132 -17.31984 -16.87672 -16.78597 -16.42119 -16.30309 -15.84705 -15.57394 -15.11921 -14.88555 -14.58272 -14.50107 -14.31110 -14.14013 -13.90542 -13.75634 -13.53676 -13.39158 -13.21169 -13.17219 -13.02616 -12.86796 -12.85152 -12.62791 -12.54605 -12.46436 -11.94545 -11.90531 -11.76255 -11.18660 -11.12738 -11.02363 -10.76949 -10.29172 -9.76924 -9.69162 -9.49572 -8.67025 -8.34515 -6.12861 1.23728 1.44207 1.44921 1.46405 1.55206 1.62708 1.92229 2.09752 2.27510 2.60822 2.93679 2.99717 3.28911 3.49437 3.53466 3.69824 3.77639 3.87295 4.02202 4.14337 4.21908 4.24261 4.25507 4.29084 4.30612 4.37068 4.43313 4.49460 4.54359 4.55618 4.71325 4.78011 4.79670 4.89116 4.94990 4.98278 5.06624 5.10969 5.24954 5.41898 5.43565 5.57419 5.65275 5.83092 6.19730 6.39078 6.42059 7.06753 7.16455 7.21644 8.74417 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029266 B = 0.001612 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.497712 B =17360.586772 C =17611.950248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.621 5.621 4 C 0.069 3.931 5 C 0.507 3.493 6 O -0.567 6.567 7 C 0.027 3.973 8 N -0.506 5.506 9 C 0.071 3.929 10 C -0.174 4.174 11 H 0.125 0.875 12 C -0.145 4.145 13 H 0.138 0.862 14 C 0.064 3.936 15 C 0.099 3.901 16 H 0.116 0.884 17 N -0.683 5.683 18 C 0.541 3.459 19 O -0.562 6.562 20 C -0.129 4.129 21 S -0.149 6.149 22 C -0.549 4.549 23 H 0.084 0.916 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.262 1.262 28 H -0.279 1.279 29 H -0.263 1.263 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.419 0.581 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.220 -26.690 -14.724 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.355 5.355 4 C -0.073 4.073 5 C 0.296 3.704 6 O -0.445 6.445 7 C -0.104 4.104 8 N -0.230 5.230 9 C -0.057 4.057 10 C -0.195 4.195 11 H 0.143 0.857 12 C -0.165 4.165 13 H 0.155 0.845 14 C -0.063 4.063 15 C -0.008 4.008 16 H 0.133 0.867 17 N -0.334 5.334 18 C 0.327 3.673 19 O -0.439 6.439 20 C -0.281 4.281 21 S 0.078 5.922 22 C -0.696 4.696 23 H 0.102 0.898 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.186 1.186 28 H -0.204 1.204 29 H -0.187 1.187 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.077 0.923 44 H 0.257 0.743 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.336 -26.877 -15.693 33.478 hybrid contribution -0.071 0.850 1.907 2.089 sum 12.265 -26.027 -13.786 31.904 Atomic orbital electron populations 1.22075 0.95867 1.02823 1.01306 1.21514 0.94461 0.81967 1.03427 1.48072 1.65796 1.14798 1.06837 1.22101 1.02312 0.98699 0.84153 1.20952 0.77097 0.89078 0.83317 1.90681 1.52745 1.68471 1.32634 1.22279 1.04228 0.92568 0.91339 1.65319 1.15077 1.27005 1.15594 1.22515 0.90849 0.97687 0.94673 1.24572 1.02755 0.91731 1.00406 0.85737 1.23958 0.91956 1.00452 1.00089 0.84463 1.22735 1.00881 0.88211 0.94505 1.22311 1.01848 0.85834 0.90814 0.86661 1.45010 1.49721 1.22297 1.16389 1.20077 0.77649 0.81163 0.88394 1.90685 1.46621 1.74189 1.32444 1.23366 1.05563 0.99421 0.99704 1.85568 1.61796 1.22629 1.22158 1.23186 1.35751 1.11202 0.99498 0.89833 1.26119 0.93776 0.97498 1.01673 1.70174 1.29461 1.22059 1.33020 0.85006 0.78856 0.77181 0.76964 1.18608 1.20397 1.18742 0.91596 0.95152 0.90336 0.92115 0.87609 0.91907 0.89444 0.88828 0.84907 0.90065 0.93897 0.90475 0.87037 0.92319 0.74348 0.87081 0.86817 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 10.24 71.98 0.74 -1.20 16 2 C 0.11 1.26 6.17 86.38 0.53 1.79 16 3 N -0.62 -7.66 2.87 -846.78 -2.43 -10.09 16 4 C 0.07 0.28 10.29 127.77 1.31 1.59 16 5 C 0.51 9.46 7.52 87.66 0.66 10.12 16 6 O -0.57 -15.90 14.80 -3.02 -0.04 -15.94 16 7 C 0.03 0.36 3.87 85.56 0.33 0.69 16 8 N -0.51 -9.27 4.98 -886.03 -4.41 -13.68 16 9 C 0.07 1.52 5.75 86.45 0.50 2.02 16 10 C -0.17 -3.60 7.22 -8.49 -0.06 -3.66 16 11 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 12 C -0.14 -2.48 6.91 -9.90 -0.07 -2.55 16 13 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 14 C 0.06 0.93 6.25 86.45 0.54 1.47 16 15 C 0.10 2.33 6.19 46.40 0.29 2.62 16 16 H 0.12 3.25 7.40 -2.39 -0.02 3.23 16 17 N -0.68 -17.47 5.57 -435.89 -2.43 -19.89 16 18 C 0.54 19.85 7.85 87.66 0.69 20.54 16 19 O -0.56 -25.91 15.43 -3.03 -0.05 -25.95 16 20 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 21 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 22 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 23 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 24 C 0.01 0.81 5.49 84.86 0.47 1.27 16 25 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 26 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 1.00 7.42 -2.39 -0.02 0.98 16 34 H 0.11 0.57 7.89 -2.39 -0.02 0.55 16 35 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 36 H 0.09 0.11 6.44 -2.39 -0.02 0.09 16 37 H 0.09 0.03 7.89 -2.39 -0.02 0.02 16 38 H 0.13 1.01 7.34 -2.38 -0.02 0.99 16 39 H 0.08 0.91 7.73 -2.39 -0.02 0.89 16 40 H 0.04 0.93 7.75 -2.39 -0.02 0.91 16 41 H 0.08 1.98 7.24 -2.39 -0.02 1.97 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 0.80 7.99 -2.39 -0.02 0.78 16 44 H 0.42 7.77 8.83 -92.71 -0.82 6.96 16 45 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 46 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -83.98 401.04 -1.05 -85.02 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.15 Total: 20.51 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 7.01 Total: -0.50 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -8.98 Total: -99.23 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.09 Total: -41.89 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -83.98 -1.05 -85.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113891365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.300 kcal (2) G-P(sol) polarization free energy of solvation -83.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds