Wall clock time and date at job start Wed Apr 1 2020 00:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46983 * 2 1 4 4 C 1.50696 * 109.47143 * 240.00044 * 2 1 3 5 5 O 1.21285 * 119.99977 * 257.15354 * 4 2 1 6 6 N 1.34777 * 120.00105 * 77.15133 * 4 2 1 7 7 C 1.46497 * 119.99905 * 175.22232 * 6 4 2 8 8 C 1.46499 * 119.99760 * 355.22215 * 6 4 2 9 9 N 1.46897 * 109.47139 * 120.00047 * 2 1 3 10 10 C 1.48565 * 110.99874 * 302.40789 * 9 2 1 11 11 C 1.54380 * 104.59303 * 200.95857 * 10 9 2 12 12 H 1.08996 * 117.60512 * 244.71299 * 11 10 9 13 13 C 1.54263 * 105.06238 * 23.85720 * 11 10 9 14 14 H 1.08999 * 121.78344 * 223.00742 * 13 11 10 15 15 C 1.48558 * 111.00055 * 186.99285 * 9 2 1 16 16 C 1.53001 * 61.45935 * 114.16493 * 13 11 10 17 17 H 1.09008 * 117.44167 * 251.46293 * 16 13 11 18 18 N 1.46497 * 117.44371 * 106.75786 * 16 13 11 19 19 C 1.34779 * 119.99817 * 154.99380 * 18 16 13 20 20 O 1.21280 * 120.00387 * 0.02562 * 19 18 16 21 21 C 1.50708 * 119.99528 * 180.02562 * 19 18 16 22 22 S 1.80998 * 109.46841 * 180.02562 * 21 19 18 23 23 C 1.76200 * 100.00284 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99220 * 0.02562 * 23 22 21 25 25 C 1.38797 * 120.00230 * 179.97438 * 23 22 21 26 26 N 1.31625 * 119.99941 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 120.00006 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47102 * 89.99678 * 27 25 23 29 29 H 1.48496 * 109.46961 * 209.99838 * 27 25 23 30 30 H 1.48506 * 109.46807 * 329.99412 * 27 25 23 31 31 H 1.08997 * 109.47132 * 66.55336 * 1 2 3 32 32 H 1.09004 * 109.46981 * 186.55152 * 1 2 3 33 33 H 1.09002 * 109.47049 * 306.54482 * 1 2 3 34 34 H 1.09000 * 109.47712 * 0.02562 * 7 6 4 35 35 H 1.08996 * 109.47183 * 120.00088 * 7 6 4 36 36 H 1.09005 * 109.47183 * 240.00041 * 7 6 4 37 37 H 1.08996 * 109.46821 * 91.52181 * 8 6 4 38 38 H 1.09005 * 109.47019 * 211.51685 * 8 6 4 39 39 H 1.08996 * 109.47400 * 331.51924 * 8 6 4 40 40 H 1.09005 * 110.41033 * 82.18578 * 10 9 2 41 41 H 1.08992 * 110.51412 * 319.79151 * 10 9 2 42 42 H 1.09003 * 110.41123 * 40.25794 * 15 9 2 43 43 H 1.09001 * 110.40901 * 277.81497 * 15 9 2 44 44 H 0.96997 * 119.99768 * 334.99922 * 18 16 13 45 45 H 1.08996 * 109.46991 * 300.00287 * 21 19 18 46 46 H 1.08998 * 109.47036 * 60.00569 * 21 19 18 47 47 H 0.96997 * 120.00269 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4547 -1.8442 -1.1461 6 7 2.0123 -0.0858 -2.4246 7 6 2.5960 -0.7353 -3.6008 8 6 1.4067 1.2426 -2.5463 9 7 2.0197 -0.6925 1.1994 10 6 1.4963 -0.0533 2.4342 11 6 2.4715 -0.4976 3.5455 12 1 2.0771 -1.1312 4.3398 13 6 3.7864 -0.8360 2.8133 14 1 4.3708 -1.7217 3.0626 15 6 3.4950 -0.5678 1.3211 16 6 3.7710 0.3528 3.7763 17 1 3.8218 1.3515 3.3423 18 7 4.4529 0.1887 5.0625 19 6 4.9173 1.2688 5.7216 20 8 4.7704 2.3765 5.2501 21 6 5.6192 1.0998 7.0444 22 16 6.1197 2.7216 7.6732 23 6 6.8913 2.2400 9.1823 24 1 6.9377 1.1962 9.4558 25 6 7.4403 3.2018 10.0189 26 7 8.0171 2.8420 11.1460 27 14 7.3607 5.0071 9.5453 28 1 6.1139 5.6060 10.0855 29 1 8.5361 5.7188 10.1083 30 1 7.3689 5.1313 8.0655 31 1 -0.3633 0.4089 -0.9428 32 1 -0.3633 -1.0210 0.1173 33 1 -0.3633 0.6119 0.8256 34 1 2.9945 -1.7096 -3.3177 35 1 1.8277 -0.8650 -4.3630 36 1 3.3999 -0.1148 -3.9971 37 1 2.1699 2.0053 -2.3919 38 1 0.9760 1.3558 -3.5412 39 1 0.6237 1.3551 -1.7965 40 1 0.4884 -0.4088 2.6484 41 1 1.5026 1.0321 2.3345 42 1 3.8156 0.4370 1.0458 43 1 3.9920 -1.3107 0.6973 44 1 4.5701 -0.6972 5.4396 45 1 4.9431 0.6272 7.7568 46 1 6.5013 0.4738 6.9103 47 1 8.4012 3.5141 11.7305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113899819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:58 Heat of formation + Delta-G solvation = -13.087022 kcal Electronic energy + Delta-G solvation = -26844.901403 eV Core-core repulsion = 22962.865514 eV Total energy + Delta-G solvation = -3882.035889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98990 -39.86888 -38.78108 -35.97164 -35.70754 -33.36648 -32.45639 -30.86357 -29.10328 -28.97729 -28.18978 -26.84492 -25.64865 -24.79847 -22.61125 -21.18692 -20.56482 -20.30560 -19.51456 -17.93254 -17.69130 -16.99588 -16.80053 -16.42694 -16.09006 -15.57733 -15.06829 -14.99772 -14.85410 -14.49896 -14.16670 -13.84395 -13.64266 -13.53761 -13.36037 -13.13885 -13.07472 -12.95449 -12.81373 -12.70080 -12.45821 -12.35386 -12.25484 -11.98826 -11.75069 -11.64065 -11.28864 -11.03319 -10.95674 -10.66891 -10.28794 -10.04314 -9.88228 -9.63637 -9.16632 -9.02346 -8.83051 -8.74032 -8.53416 -6.94530 -6.30492 -4.02754 2.20562 2.43449 2.64143 2.73172 3.13704 3.31562 3.47263 3.48456 3.50146 3.61879 3.96810 4.31034 4.34285 4.38736 4.48330 4.50836 4.56973 4.62756 4.67933 4.76922 4.84820 4.88397 4.95833 4.98050 5.08517 5.08728 5.12783 5.16294 5.18800 5.23051 5.33960 5.38633 5.55761 5.64689 5.70780 5.71979 5.85675 5.87286 5.93731 5.97803 6.34904 6.42630 6.50952 6.87383 7.50247 7.78183 7.92470 8.38115 8.40233 9.15449 10.78705 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.001799 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.137497 B =15564.151002 C =15855.985835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 H 0.067 0.933 4 C 0.519 3.481 5 O -0.515 6.515 6 N -0.626 5.626 7 C 0.080 3.920 8 C 0.068 3.932 9 N -0.486 5.486 10 C 0.065 3.935 11 C -0.177 4.177 12 H 0.123 0.877 13 C -0.166 4.166 14 H 0.120 0.880 15 C 0.063 3.937 16 C 0.122 3.878 17 H 0.136 0.864 18 N -0.706 5.706 19 C 0.537 3.463 20 O -0.516 6.516 21 C -0.124 4.124 22 S -0.140 6.140 23 C -0.522 4.522 24 H 0.089 0.911 25 C 0.096 3.904 26 N -0.879 5.879 27 Si 0.857 3.143 28 H -0.267 1.267 29 H -0.274 1.274 30 H -0.235 1.235 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.095 0.905 44 H 0.403 0.597 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 -6.877 -28.402 33.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 H 0.085 0.915 4 C 0.306 3.694 5 O -0.389 6.389 6 N -0.362 5.362 7 C -0.062 4.062 8 C -0.075 4.075 9 N -0.211 5.211 10 C -0.063 4.063 11 C -0.198 4.198 12 H 0.141 0.859 13 C -0.186 4.186 14 H 0.138 0.862 15 C -0.064 4.064 16 C 0.014 3.986 17 H 0.153 0.847 18 N -0.357 5.357 19 C 0.323 3.677 20 O -0.390 6.390 21 C -0.275 4.275 22 S 0.086 5.914 23 C -0.670 4.670 24 H 0.107 0.893 25 C -0.113 4.113 26 N -0.516 5.516 27 Si 0.682 3.318 28 H -0.192 1.192 29 H -0.199 1.199 30 H -0.159 1.159 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.238 0.762 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.338 -6.141 -29.025 33.869 hybrid contribution 0.564 -0.141 0.756 0.954 sum -15.774 -6.282 -28.270 32.976 Atomic orbital electron populations 1.21936 0.91651 1.04137 1.02815 1.21775 0.97682 0.96145 0.90137 0.91540 1.20493 0.78239 0.86576 0.84061 1.90705 1.45400 1.17580 1.85232 1.47720 1.60081 1.19246 1.09145 1.21675 0.98150 0.99566 0.86833 1.22021 0.98567 0.83398 1.03545 1.65478 1.05880 1.49804 0.99952 1.22611 0.98631 0.97155 0.87859 1.24588 0.89143 1.05379 1.00663 0.85935 1.23862 1.01637 1.00829 0.92296 0.86242 1.22658 0.88346 1.00783 0.94654 1.22316 0.93944 0.96781 0.85526 0.84675 1.45307 1.59394 1.10128 1.20854 1.20330 0.77563 0.83954 0.85804 1.90693 1.55842 1.24671 1.67796 1.23280 1.03016 1.05475 0.95694 1.84785 1.74836 1.05609 1.26161 1.22312 1.42700 0.97927 1.04045 0.89336 1.24711 0.93396 0.99337 0.93853 1.69934 1.36199 1.34770 1.10685 0.86734 0.78663 0.84593 0.81855 1.19188 1.19918 1.15940 0.91188 0.90627 0.90913 0.89474 0.92268 0.92217 0.92359 0.90771 0.90158 0.89036 0.93080 0.93615 0.88656 0.76238 0.88272 0.88244 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.43 37.16 0.31 -0.53 16 2 C 0.05 0.43 1.44 -68.87 -0.10 0.33 16 3 H 0.07 0.45 7.36 -51.93 -0.38 0.07 16 4 C 0.52 5.00 6.45 -10.99 -0.07 4.92 16 5 O -0.52 -6.94 14.85 5.55 0.08 -6.86 16 6 N -0.63 -4.34 3.27 -189.52 -0.62 -4.96 16 7 C 0.08 0.47 10.69 59.85 0.64 1.11 16 8 C 0.07 0.25 9.89 59.85 0.59 0.84 16 9 N -0.49 -4.69 4.84 -223.41 -1.08 -5.77 16 10 C 0.06 0.56 5.10 -2.18 -0.01 0.54 16 11 C -0.18 -1.70 7.22 -87.06 -0.63 -2.33 16 12 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.17 -1.65 6.91 -89.23 -0.62 -2.27 16 14 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.06 0.64 5.58 -2.18 -0.01 0.63 16 16 C 0.12 1.41 6.19 -65.76 -0.41 1.01 16 17 H 0.14 1.78 7.40 -51.92 -0.38 1.40 16 18 N -0.71 -8.95 5.57 -51.70 -0.29 -9.24 16 19 C 0.54 9.33 7.85 -10.98 -0.09 9.25 16 20 O -0.52 -10.87 15.43 5.56 0.09 -10.79 16 21 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 22 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 23 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 24 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 25 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 26 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 27 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 28 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 30 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 31 H 0.07 0.28 5.80 -51.93 -0.30 -0.02 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.34 7.25 -51.93 -0.38 -0.03 16 34 H 0.09 0.68 6.91 -51.93 -0.36 0.32 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.15 8.08 -51.93 -0.42 -0.27 16 39 H 0.08 0.23 4.42 -51.93 -0.23 0.00 16 40 H 0.09 0.69 7.80 -51.93 -0.41 0.28 16 41 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 42 H 0.05 0.45 7.86 -51.93 -0.41 0.04 16 43 H 0.10 1.09 7.33 -51.93 -0.38 0.71 16 44 H 0.40 3.99 8.83 -40.82 -0.36 3.63 16 45 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 46 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -36.24 391.14 -9.19 -45.43 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.38 Total: 1.09 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 0.05 Total: -0.57 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -1.22 Total: -45.61 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.24 -9.19 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113899819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.347 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds