Wall clock time and date at job start Wed Apr 1 2020 00:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46983 * 2 1 4 4 C 1.50696 * 109.47143 * 240.00044 * 2 1 3 5 5 O 1.21285 * 119.99977 * 257.15354 * 4 2 1 6 6 N 1.34777 * 120.00105 * 77.15133 * 4 2 1 7 7 C 1.46497 * 119.99905 * 175.22232 * 6 4 2 8 8 C 1.46499 * 119.99760 * 355.22215 * 6 4 2 9 9 N 1.46897 * 109.47139 * 120.00047 * 2 1 3 10 10 C 1.48565 * 110.99874 * 302.40789 * 9 2 1 11 11 C 1.54380 * 104.59303 * 200.95857 * 10 9 2 12 12 H 1.08996 * 117.60512 * 244.71299 * 11 10 9 13 13 C 1.54263 * 105.06238 * 23.85720 * 11 10 9 14 14 H 1.08999 * 121.78344 * 223.00742 * 13 11 10 15 15 C 1.48558 * 111.00055 * 186.99285 * 9 2 1 16 16 C 1.53001 * 61.45935 * 114.16493 * 13 11 10 17 17 H 1.09008 * 117.44167 * 251.46293 * 16 13 11 18 18 N 1.46497 * 117.44371 * 106.75786 * 16 13 11 19 19 C 1.34779 * 119.99817 * 154.99380 * 18 16 13 20 20 O 1.21280 * 120.00387 * 0.02562 * 19 18 16 21 21 C 1.50708 * 119.99528 * 180.02562 * 19 18 16 22 22 S 1.80998 * 109.46841 * 180.02562 * 21 19 18 23 23 C 1.76200 * 100.00284 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99220 * 0.02562 * 23 22 21 25 25 C 1.38797 * 120.00230 * 179.97438 * 23 22 21 26 26 N 1.31625 * 119.99941 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 120.00006 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47102 * 89.99678 * 27 25 23 29 29 H 1.48496 * 109.46961 * 209.99838 * 27 25 23 30 30 H 1.48506 * 109.46807 * 329.99412 * 27 25 23 31 31 H 1.08997 * 109.47132 * 66.55336 * 1 2 3 32 32 H 1.09004 * 109.46981 * 186.55152 * 1 2 3 33 33 H 1.09002 * 109.47049 * 306.54482 * 1 2 3 34 34 H 1.09000 * 109.47712 * 0.02562 * 7 6 4 35 35 H 1.08996 * 109.47183 * 120.00088 * 7 6 4 36 36 H 1.09005 * 109.47183 * 240.00041 * 7 6 4 37 37 H 1.08996 * 109.46821 * 91.52181 * 8 6 4 38 38 H 1.09005 * 109.47019 * 211.51685 * 8 6 4 39 39 H 1.08996 * 109.47400 * 331.51924 * 8 6 4 40 40 H 1.09005 * 110.41033 * 82.18578 * 10 9 2 41 41 H 1.08992 * 110.51412 * 319.79151 * 10 9 2 42 42 H 1.09003 * 110.41123 * 40.25794 * 15 9 2 43 43 H 1.09001 * 110.40901 * 277.81497 * 15 9 2 44 44 H 0.96997 * 119.99768 * 334.99922 * 18 16 13 45 45 H 1.08996 * 109.46991 * 300.00287 * 21 19 18 46 46 H 1.08998 * 109.47036 * 60.00569 * 21 19 18 47 47 H 0.96997 * 120.00269 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4547 -1.8442 -1.1461 6 7 2.0123 -0.0858 -2.4246 7 6 2.5960 -0.7353 -3.6008 8 6 1.4067 1.2426 -2.5463 9 7 2.0197 -0.6925 1.1994 10 6 1.4963 -0.0533 2.4342 11 6 2.4715 -0.4976 3.5455 12 1 2.0771 -1.1312 4.3398 13 6 3.7864 -0.8360 2.8133 14 1 4.3708 -1.7217 3.0626 15 6 3.4950 -0.5678 1.3211 16 6 3.7710 0.3528 3.7763 17 1 3.8218 1.3515 3.3423 18 7 4.4529 0.1887 5.0625 19 6 4.9173 1.2688 5.7216 20 8 4.7704 2.3765 5.2501 21 6 5.6192 1.0998 7.0444 22 16 6.1197 2.7216 7.6732 23 6 6.8913 2.2400 9.1823 24 1 6.9377 1.1962 9.4558 25 6 7.4403 3.2018 10.0189 26 7 8.0171 2.8420 11.1460 27 14 7.3607 5.0071 9.5453 28 1 6.1139 5.6060 10.0855 29 1 8.5361 5.7188 10.1083 30 1 7.3689 5.1313 8.0655 31 1 -0.3633 0.4089 -0.9428 32 1 -0.3633 -1.0210 0.1173 33 1 -0.3633 0.6119 0.8256 34 1 2.9945 -1.7096 -3.3177 35 1 1.8277 -0.8650 -4.3630 36 1 3.3999 -0.1148 -3.9971 37 1 2.1699 2.0053 -2.3919 38 1 0.9760 1.3558 -3.5412 39 1 0.6237 1.3551 -1.7965 40 1 0.4884 -0.4088 2.6484 41 1 1.5026 1.0321 2.3345 42 1 3.8156 0.4370 1.0458 43 1 3.9920 -1.3107 0.6973 44 1 4.5701 -0.6972 5.4396 45 1 4.9431 0.6272 7.7568 46 1 6.5013 0.4738 6.9103 47 1 8.4012 3.5141 11.7305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113899819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:58 Heat of formation + Delta-G solvation = -40.536753 kcal Electronic energy + Delta-G solvation = -26846.091713 eV Core-core repulsion = 22962.865514 eV Total energy + Delta-G solvation = -3883.226199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72780 -40.84314 -39.86853 -36.61997 -36.55539 -34.67770 -34.39658 -31.76266 -30.35542 -29.67190 -28.66353 -27.86002 -27.35896 -25.52044 -23.36794 -22.04713 -21.84485 -21.05259 -20.12976 -19.86561 -18.40162 -18.03249 -17.79557 -17.44429 -17.09817 -16.63972 -16.47432 -16.39036 -15.79079 -15.49232 -15.21798 -14.99574 -14.83655 -14.46380 -14.29157 -14.05257 -13.99195 -13.75889 -13.63804 -13.37462 -13.34652 -13.29189 -13.03297 -12.99393 -12.92095 -12.65089 -12.52889 -12.46815 -12.31529 -11.91696 -11.87163 -11.17152 -11.16613 -11.04425 -10.75473 -10.54751 -9.80831 -9.69754 -9.51000 -8.99790 -8.51345 -6.22493 0.96126 1.31831 1.41098 1.45135 1.52574 1.53872 1.90330 2.05180 2.25180 2.58865 2.68371 2.86375 2.86927 3.39397 3.50780 3.64409 3.70708 3.77158 3.93767 4.03567 4.13580 4.21724 4.22127 4.23665 4.39507 4.41047 4.45632 4.48199 4.49692 4.61939 4.73380 4.75461 4.79205 4.86600 4.89351 4.91620 5.01844 5.11228 5.23545 5.40634 5.45639 5.64652 5.70756 5.82677 6.11732 6.31340 6.37606 6.93620 7.10613 7.13604 8.60987 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.001799 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.137497 B =15564.151002 C =15855.985835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 H 0.081 0.919 4 C 0.512 3.488 5 O -0.566 6.566 6 N -0.625 5.625 7 C 0.077 3.923 8 C 0.061 3.939 9 N -0.500 5.500 10 C 0.066 3.934 11 C -0.161 4.161 12 H 0.136 0.864 13 C -0.158 4.158 14 H 0.127 0.873 15 C 0.066 3.934 16 C 0.103 3.897 17 H 0.119 0.881 18 N -0.683 5.683 19 C 0.543 3.457 20 O -0.558 6.558 21 C -0.111 4.111 22 S -0.172 6.172 23 C -0.530 4.530 24 H 0.062 0.938 25 C 0.045 3.955 26 N -0.917 5.917 27 Si 0.915 3.085 28 H -0.261 1.261 29 H -0.260 1.260 30 H -0.236 1.236 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.419 0.581 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 -6.276 -30.014 35.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 H 0.098 0.902 4 C 0.300 3.700 5 O -0.444 6.444 6 N -0.359 5.359 7 C -0.065 4.065 8 C -0.080 4.080 9 N -0.225 5.225 10 C -0.061 4.061 11 C -0.181 4.181 12 H 0.153 0.847 13 C -0.178 4.178 14 H 0.145 0.855 15 C -0.061 4.061 16 C -0.004 4.004 17 H 0.136 0.864 18 N -0.334 5.334 19 C 0.329 3.671 20 O -0.435 6.435 21 C -0.262 4.262 22 S 0.054 5.946 23 C -0.678 4.678 24 H 0.081 0.919 25 C -0.160 4.160 26 N -0.554 5.554 27 Si 0.737 3.263 28 H -0.186 1.186 29 H -0.184 1.184 30 H -0.160 1.160 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.257 0.743 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.141 -5.561 -30.673 36.067 hybrid contribution 1.057 -0.468 1.113 1.605 sum -17.084 -6.029 -29.559 34.669 Atomic orbital electron populations 1.21940 0.89856 1.03673 1.04535 1.21869 0.99006 0.96178 0.88680 0.90187 1.20887 0.77740 0.86169 0.85252 1.90678 1.47897 1.19727 1.86067 1.47889 1.59218 1.20178 1.08594 1.21756 0.99239 0.98641 0.86895 1.22263 0.98975 0.81607 1.05203 1.65448 1.05290 1.50785 1.00984 1.22681 0.98938 0.97533 0.86959 1.24686 0.88867 1.03702 1.00855 0.84670 1.23836 1.02015 0.99929 0.92013 0.85478 1.22554 0.89062 1.00166 0.94356 1.22305 0.96171 0.96768 0.85144 0.86350 1.44997 1.57929 1.09667 1.20766 1.19950 0.77543 0.84325 0.85280 1.90683 1.57829 1.26379 1.68646 1.23260 1.04303 1.01700 0.96963 1.84688 1.74777 1.10621 1.24476 1.22466 1.42763 0.96873 1.05679 0.91931 1.25573 0.93123 1.03492 0.93846 1.70014 1.37249 1.36395 1.11785 0.85860 0.79276 0.79715 0.81484 1.18601 1.18407 1.16014 0.89274 0.92104 0.89465 0.91974 0.90308 0.90737 0.91701 0.88722 0.89137 0.87479 0.92495 0.93637 0.90401 0.74333 0.86526 0.86665 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.43 71.98 0.61 -0.70 16 2 C 0.05 0.78 1.44 44.17 0.06 0.84 16 3 H 0.08 0.92 7.36 -2.39 -0.02 0.90 16 4 C 0.51 9.57 6.45 87.66 0.57 10.13 16 5 O -0.57 -15.66 14.85 -3.04 -0.05 -15.70 16 6 N -0.62 -7.83 3.27 -871.90 -2.85 -10.69 16 7 C 0.08 0.84 10.69 127.77 1.37 2.20 16 8 C 0.06 0.28 9.89 127.77 1.26 1.55 16 9 N -0.50 -8.99 4.84 -860.72 -4.17 -13.16 16 10 C 0.07 0.98 5.10 86.45 0.44 1.42 16 11 C -0.16 -2.71 7.22 -8.49 -0.06 -2.77 16 12 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 13 C -0.16 -2.91 6.91 -9.90 -0.07 -2.98 16 14 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.07 1.31 5.58 86.45 0.48 1.79 16 16 C 0.10 2.23 6.19 46.40 0.29 2.52 16 17 H 0.12 3.04 7.40 -2.38 -0.02 3.03 16 18 N -0.68 -16.03 5.57 -435.87 -2.43 -18.46 16 19 C 0.54 18.18 7.85 87.66 0.69 18.87 16 20 O -0.56 -23.20 15.43 -3.03 -0.05 -23.25 16 21 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 22 S -0.17 -8.58 18.55 -56.49 -1.05 -9.62 16 23 C -0.53 -30.65 10.04 67.95 0.68 -29.97 16 24 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 25 C 0.05 2.63 5.50 84.86 0.47 3.10 16 26 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 27 Si 0.91 44.64 27.74 68.60 1.90 46.54 16 28 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 29 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 30 H -0.24 -11.48 6.74 99.48 0.67 -10.81 16 31 H 0.09 0.46 5.80 -2.39 -0.01 0.44 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.56 7.25 -2.39 -0.02 0.54 16 34 H 0.06 1.01 6.91 -2.39 -0.02 0.99 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 0.09 8.08 -2.38 -0.02 0.07 16 39 H 0.09 0.24 4.42 -2.39 -0.01 0.22 16 40 H 0.11 1.29 7.80 -2.38 -0.02 1.27 16 41 H 0.06 0.79 8.00 -2.39 -0.02 0.78 16 42 H 0.05 0.88 7.86 -2.39 -0.02 0.86 16 43 H 0.08 1.82 7.33 -2.39 -0.02 1.81 16 44 H 0.42 7.21 8.83 -92.71 -0.82 6.39 16 45 H 0.12 3.89 8.14 -2.40 -0.02 3.87 16 46 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 47 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -80.20 391.14 -1.03 -81.24 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.13 Total: 16.05 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 7.22 Total: 2.35 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -9.15 Total: -97.61 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.09 Total: -38.95 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.62 kcal Total: -80.20 -1.03 -81.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113899819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.703 kcal (2) G-P(sol) polarization free energy of solvation -80.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds