Wall clock time and date at job start Wed Apr 1 2020 00:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46695 * 2 1 4 4 C 1.50696 * 109.47335 * 120.00113 * 2 1 3 5 5 O 1.21286 * 119.99514 * 91.08715 * 4 2 1 6 6 N 1.34768 * 120.00298 * 271.08900 * 4 2 1 7 7 C 1.46501 * 120.00016 * 184.86411 * 6 4 2 8 8 C 1.46499 * 120.00127 * 4.86475 * 6 4 2 9 9 N 1.46905 * 109.47143 * 240.00773 * 2 1 3 10 10 C 1.52147 * 110.66420 * 185.48869 * 9 2 1 11 11 C 1.54379 * 102.88590 * 200.86214 * 10 9 2 12 12 H 1.09007 * 117.59797 * 243.55392 * 11 10 9 13 13 C 1.54256 * 106.29291 * 24.09427 * 11 10 9 14 14 H 1.09003 * 121.78954 * 221.49977 * 13 11 10 15 15 C 1.48555 * 111.00266 * 69.99531 * 9 2 1 16 16 C 1.52995 * 118.13187 * 88.03860 * 11 10 9 17 17 H 1.08994 * 117.44503 * 14.37438 * 16 11 10 18 18 N 1.46505 * 117.44767 * 159.13250 * 16 11 10 19 19 C 1.34770 * 120.00062 * 204.99950 * 18 16 11 20 20 O 1.21288 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00172 * 179.97438 * 19 18 16 22 22 S 1.81004 * 109.47371 * 180.02562 * 21 19 18 23 23 C 1.76196 * 99.99927 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00286 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99757 * 179.97438 * 23 22 21 26 26 N 1.31625 * 119.99886 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99751 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47218 * 90.00476 * 27 25 23 29 29 H 1.48503 * 109.46889 * 210.00254 * 27 25 23 30 30 H 1.48499 * 109.47323 * 330.00275 * 27 25 23 31 31 H 1.09006 * 109.46666 * 180.48412 * 1 2 3 32 32 H 1.08997 * 109.47276 * 300.47741 * 1 2 3 33 33 H 1.08998 * 109.47277 * 60.48254 * 1 2 3 34 34 H 1.08995 * 109.47378 * 89.99865 * 7 6 4 35 35 H 1.09003 * 109.46886 * 210.00131 * 7 6 4 36 36 H 1.09004 * 109.47429 * 329.99318 * 7 6 4 37 37 H 1.08998 * 109.46976 * 63.33782 * 8 6 4 38 38 H 1.09003 * 109.47277 * 183.34090 * 8 6 4 39 39 H 1.09003 * 109.46915 * 303.34217 * 8 6 4 40 40 H 1.08996 * 110.53307 * 82.97391 * 10 9 2 41 41 H 1.08998 * 111.91724 * 319.39096 * 10 9 2 42 42 H 1.09008 * 110.41212 * 40.26366 * 15 9 2 43 43 H 1.09000 * 110.41501 * 277.82246 * 15 9 2 44 44 H 0.96995 * 119.99739 * 24.99144 * 18 16 11 45 45 H 1.09001 * 109.47003 * 299.99308 * 21 19 18 46 46 H 1.08997 * 109.47521 * 59.99515 * 21 19 18 47 47 H 0.96997 * 119.99783 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2533 -1.9024 1.1946 6 7 2.2361 -0.0213 2.3705 7 6 2.8246 -0.6884 3.5345 8 6 1.8692 1.3950 2.4459 9 7 2.0197 -0.6924 -1.1996 10 6 3.5347 -0.8272 -1.1608 11 6 3.8987 -1.0485 -2.6447 12 1 4.3552 -2.0004 -2.9161 13 6 2.7481 -0.4347 -3.4687 14 1 2.3480 -0.9297 -4.3536 15 6 1.7499 0.1063 -2.4227 16 6 4.1470 0.1830 -3.5179 17 1 4.2923 1.1371 -3.0113 18 7 4.9253 -0.0049 -4.7448 19 6 5.6002 1.0315 -5.2801 20 8 5.5629 2.1200 -4.7464 21 6 6.4012 0.8381 -6.5418 22 16 7.1857 2.4024 -7.0044 23 6 8.0313 1.9001 -8.4663 24 1 7.9583 0.8782 -8.8083 25 6 8.7912 2.8177 -9.1784 26 7 8.8805 4.0629 -8.7614 27 14 9.6882 2.2850 -10.7279 28 1 8.8029 2.4798 -11.9042 29 1 10.9178 3.1011 -10.8933 30 1 10.0571 0.8508 -10.6181 31 1 -0.3633 -1.0277 0.0087 32 1 -0.3634 0.5212 0.8856 33 1 -0.3634 0.5063 -0.8943 34 1 3.9097 -0.5932 3.4978 35 1 2.4498 -0.2247 4.4470 36 1 2.5518 -1.7437 3.5249 37 1 0.7916 1.4984 2.3186 38 1 2.1604 1.7946 3.4173 39 1 2.3826 1.9458 1.6577 40 1 3.8264 -1.6919 -0.5648 41 1 4.0140 0.0757 -0.7825 42 1 1.9331 1.1642 -2.2341 43 1 0.7249 -0.0487 -2.7596 44 1 4.9549 -0.8753 -5.1718 45 1 7.1691 0.0832 -6.3726 46 1 5.7409 0.5109 -7.3449 47 1 9.4118 4.7041 -9.2588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113899821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:01 Heat of formation + Delta-G solvation = -17.499627 kcal Electronic energy + Delta-G solvation = -26868.745725 eV Core-core repulsion = 22986.518492 eV Total energy + Delta-G solvation = -3882.227234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90600 -39.84563 -38.61342 -35.96999 -35.58987 -33.24576 -32.44617 -30.68180 -28.93672 -28.90695 -28.31129 -26.77762 -25.52839 -24.73221 -22.54413 -21.15513 -20.47376 -20.30428 -19.37672 -17.87851 -17.61713 -16.99819 -16.70459 -16.31638 -16.05548 -15.48980 -14.93412 -14.81922 -14.68008 -14.40178 -14.20849 -13.80239 -13.55408 -13.33221 -13.28352 -13.13270 -13.05988 -12.96428 -12.79673 -12.56297 -12.43564 -12.40800 -12.13459 -11.93344 -11.67071 -11.64615 -11.07935 -11.04318 -10.93266 -10.78512 -10.24544 -9.99025 -9.83315 -9.50829 -9.13332 -9.08390 -8.81370 -8.71495 -8.26935 -6.52574 -6.23537 -3.94343 2.21396 2.47766 2.85946 2.87606 3.21477 3.24707 3.29333 3.46840 3.56688 3.63879 4.00843 4.18616 4.37188 4.49739 4.55685 4.58187 4.63411 4.67352 4.80601 4.86054 4.90134 4.97328 5.06773 5.09095 5.11830 5.16430 5.19271 5.21174 5.28778 5.36713 5.39409 5.51846 5.61650 5.71779 5.79141 5.84683 5.89043 5.94418 5.96890 6.10425 6.27774 6.46946 6.57697 6.89045 7.57874 7.61258 7.79602 8.33521 8.51557 9.21912 10.83903 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.001761 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.120262 B =15898.289484 C =16143.908724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.052 3.948 3 H 0.065 0.935 4 C 0.519 3.481 5 O -0.517 6.517 6 N -0.626 5.626 7 C 0.084 3.916 8 C 0.076 3.924 9 N -0.485 5.485 10 C 0.060 3.940 11 C -0.171 4.171 12 H 0.120 0.880 13 C -0.172 4.172 14 H 0.121 0.879 15 C 0.065 3.935 16 C 0.122 3.878 17 H 0.132 0.868 18 N -0.708 5.708 19 C 0.538 3.462 20 O -0.514 6.514 21 C -0.153 4.153 22 S -0.059 6.059 23 C -0.536 4.536 24 H 0.073 0.927 25 C 0.073 3.927 26 N -0.867 5.867 27 Si 0.919 3.081 28 H -0.277 1.277 29 H -0.282 1.282 30 H -0.272 1.272 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.401 0.599 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.476 -8.944 22.386 29.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 H 0.083 0.917 4 C 0.306 3.694 5 O -0.391 6.391 6 N -0.362 5.362 7 C -0.058 4.058 8 C -0.067 4.067 9 N -0.210 5.210 10 C -0.067 4.067 11 C -0.192 4.192 12 H 0.138 0.862 13 C -0.193 4.193 14 H 0.139 0.861 15 C -0.063 4.063 16 C 0.014 3.986 17 H 0.150 0.850 18 N -0.360 5.360 19 C 0.325 3.675 20 O -0.388 6.388 21 C -0.304 4.304 22 S 0.168 5.832 23 C -0.684 4.684 24 H 0.091 0.909 25 C -0.136 4.136 26 N -0.503 5.503 27 Si 0.746 3.254 28 H -0.203 1.203 29 H -0.207 1.207 30 H -0.197 1.197 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.236 0.764 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.598 -8.097 23.227 30.245 hybrid contribution 1.001 -1.180 -1.715 2.310 sum -16.597 -9.277 21.512 28.710 Atomic orbital electron populations 1.21720 0.91498 1.03732 1.02551 1.21863 0.98031 0.96283 0.89876 0.91692 1.20475 0.77451 0.87451 0.84053 1.90708 1.50065 1.14587 1.83720 1.47785 1.63642 1.11532 1.13217 1.21680 0.98039 0.99259 0.86855 1.21884 1.00711 0.80721 1.03389 1.66617 1.11230 1.43245 0.99954 1.23308 0.86803 1.01881 0.94666 1.23819 1.03601 0.99058 0.92689 0.86239 1.23946 0.89723 1.05296 1.00335 0.86065 1.22617 0.99463 0.95325 0.88911 1.21653 0.91510 0.97578 0.87847 0.84996 1.45368 1.50803 1.13541 1.26268 1.20359 0.78260 0.83588 0.85341 1.90697 1.61477 1.24839 1.61778 1.23534 1.01988 1.08252 0.96605 1.85394 1.60141 1.05488 1.32200 1.22869 1.35137 0.99104 1.11312 0.90873 1.24998 0.95967 0.94512 0.98120 1.70013 1.38598 1.02754 1.38907 0.86157 0.78891 0.78640 0.81750 1.20253 1.20740 1.19683 0.90904 0.91830 0.91056 0.92646 0.91197 0.90390 0.91892 0.90142 0.91747 0.88387 0.93060 0.93096 0.88990 0.76420 0.89023 0.89015 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.24 37.16 0.34 -0.56 16 2 C 0.05 0.43 1.70 -68.86 -0.12 0.32 16 3 H 0.07 0.46 6.24 -51.93 -0.32 0.14 16 4 C 0.52 5.16 5.97 -10.99 -0.07 5.09 16 5 O -0.52 -7.07 14.95 5.55 0.08 -6.98 16 6 N -0.63 -4.54 3.27 -189.52 -0.62 -5.16 16 7 C 0.08 0.51 10.43 59.85 0.62 1.14 16 8 C 0.08 0.30 9.71 59.85 0.58 0.89 16 9 N -0.48 -4.88 5.01 -220.15 -1.10 -5.98 16 10 C 0.06 0.64 5.44 -0.11 0.00 0.64 16 11 C -0.17 -1.79 6.96 -89.24 -0.62 -2.42 16 12 H 0.12 1.17 8.14 -51.92 -0.42 0.75 16 13 C -0.17 -1.75 7.05 -89.24 -0.63 -2.38 16 14 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.06 0.59 5.56 -2.19 -0.01 0.58 16 16 C 0.12 1.49 5.97 -67.93 -0.41 1.09 16 17 H 0.13 1.85 7.40 -51.93 -0.38 1.47 16 18 N -0.71 -9.54 5.56 -53.81 -0.30 -9.84 16 19 C 0.54 9.92 7.85 -10.99 -0.09 9.83 16 20 O -0.51 -11.49 15.43 5.55 0.09 -11.40 16 21 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 22 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 23 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 24 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 25 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 26 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 27 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.31 6.95 -51.93 -0.36 -0.05 16 33 H 0.07 0.41 7.24 -51.93 -0.38 0.03 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.25 7.95 -51.93 -0.41 -0.16 16 36 H 0.08 0.59 7.36 -51.93 -0.38 0.21 16 37 H 0.06 0.19 6.95 -51.93 -0.36 -0.17 16 38 H 0.08 0.19 7.82 -51.93 -0.41 -0.22 16 39 H 0.06 0.25 7.05 -51.93 -0.37 -0.11 16 40 H 0.10 1.17 7.08 -51.93 -0.37 0.81 16 41 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 42 H 0.05 0.45 7.82 -51.92 -0.41 0.05 16 43 H 0.09 0.73 7.75 -51.93 -0.40 0.33 16 44 H 0.40 4.24 8.83 -40.82 -0.36 3.88 16 45 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -36.53 395.41 -9.77 -46.31 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.41 Total: 1.41 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -1.29 Total: -46.28 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.53 -9.77 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113899821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.809 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds