Wall clock time and date at job start Wed Apr 1 2020 00:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46695 * 2 1 4 4 C 1.50696 * 109.47335 * 120.00113 * 2 1 3 5 5 O 1.21286 * 119.99514 * 91.08715 * 4 2 1 6 6 N 1.34768 * 120.00298 * 271.08900 * 4 2 1 7 7 C 1.46501 * 120.00016 * 184.86411 * 6 4 2 8 8 C 1.46499 * 120.00127 * 4.86475 * 6 4 2 9 9 N 1.46905 * 109.47143 * 240.00773 * 2 1 3 10 10 C 1.52147 * 110.66420 * 185.48869 * 9 2 1 11 11 C 1.54379 * 102.88590 * 200.86214 * 10 9 2 12 12 H 1.09007 * 117.59797 * 243.55392 * 11 10 9 13 13 C 1.54256 * 106.29291 * 24.09427 * 11 10 9 14 14 H 1.09003 * 121.78954 * 221.49977 * 13 11 10 15 15 C 1.48555 * 111.00266 * 69.99531 * 9 2 1 16 16 C 1.52995 * 118.13187 * 88.03860 * 11 10 9 17 17 H 1.08994 * 117.44503 * 14.37438 * 16 11 10 18 18 N 1.46505 * 117.44767 * 159.13250 * 16 11 10 19 19 C 1.34770 * 120.00062 * 204.99950 * 18 16 11 20 20 O 1.21288 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00172 * 179.97438 * 19 18 16 22 22 S 1.81004 * 109.47371 * 180.02562 * 21 19 18 23 23 C 1.76196 * 99.99927 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00286 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99757 * 179.97438 * 23 22 21 26 26 N 1.31625 * 119.99886 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99751 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47218 * 90.00476 * 27 25 23 29 29 H 1.48503 * 109.46889 * 210.00254 * 27 25 23 30 30 H 1.48499 * 109.47323 * 330.00275 * 27 25 23 31 31 H 1.09006 * 109.46666 * 180.48412 * 1 2 3 32 32 H 1.08997 * 109.47276 * 300.47741 * 1 2 3 33 33 H 1.08998 * 109.47277 * 60.48254 * 1 2 3 34 34 H 1.08995 * 109.47378 * 89.99865 * 7 6 4 35 35 H 1.09003 * 109.46886 * 210.00131 * 7 6 4 36 36 H 1.09004 * 109.47429 * 329.99318 * 7 6 4 37 37 H 1.08998 * 109.46976 * 63.33782 * 8 6 4 38 38 H 1.09003 * 109.47277 * 183.34090 * 8 6 4 39 39 H 1.09003 * 109.46915 * 303.34217 * 8 6 4 40 40 H 1.08996 * 110.53307 * 82.97391 * 10 9 2 41 41 H 1.08998 * 111.91724 * 319.39096 * 10 9 2 42 42 H 1.09008 * 110.41212 * 40.26366 * 15 9 2 43 43 H 1.09000 * 110.41501 * 277.82246 * 15 9 2 44 44 H 0.96995 * 119.99739 * 24.99144 * 18 16 11 45 45 H 1.09001 * 109.47003 * 299.99308 * 21 19 18 46 46 H 1.08997 * 109.47521 * 59.99515 * 21 19 18 47 47 H 0.96997 * 119.99783 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2533 -1.9024 1.1946 6 7 2.2361 -0.0213 2.3705 7 6 2.8246 -0.6884 3.5345 8 6 1.8692 1.3950 2.4459 9 7 2.0197 -0.6924 -1.1996 10 6 3.5347 -0.8272 -1.1608 11 6 3.8987 -1.0485 -2.6447 12 1 4.3552 -2.0004 -2.9161 13 6 2.7481 -0.4347 -3.4687 14 1 2.3480 -0.9297 -4.3536 15 6 1.7499 0.1063 -2.4227 16 6 4.1470 0.1830 -3.5179 17 1 4.2923 1.1371 -3.0113 18 7 4.9253 -0.0049 -4.7448 19 6 5.6002 1.0315 -5.2801 20 8 5.5629 2.1200 -4.7464 21 6 6.4012 0.8381 -6.5418 22 16 7.1857 2.4024 -7.0044 23 6 8.0313 1.9001 -8.4663 24 1 7.9583 0.8782 -8.8083 25 6 8.7912 2.8177 -9.1784 26 7 8.8805 4.0629 -8.7614 27 14 9.6882 2.2850 -10.7279 28 1 8.8029 2.4798 -11.9042 29 1 10.9178 3.1011 -10.8933 30 1 10.0571 0.8508 -10.6181 31 1 -0.3633 -1.0277 0.0087 32 1 -0.3634 0.5212 0.8856 33 1 -0.3634 0.5063 -0.8943 34 1 3.9097 -0.5932 3.4978 35 1 2.4498 -0.2247 4.4470 36 1 2.5518 -1.7437 3.5249 37 1 0.7916 1.4984 2.3186 38 1 2.1604 1.7946 3.4173 39 1 2.3826 1.9458 1.6577 40 1 3.8264 -1.6919 -0.5648 41 1 4.0140 0.0757 -0.7825 42 1 1.9331 1.1642 -2.2341 43 1 0.7249 -0.0487 -2.7596 44 1 4.9549 -0.8753 -5.1718 45 1 7.1691 0.0832 -6.3726 46 1 5.7409 0.5109 -7.3449 47 1 9.4118 4.7041 -9.2588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113899821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:00 Heat of formation + Delta-G solvation = -45.144498 kcal Electronic energy + Delta-G solvation = -26869.944497 eV Core-core repulsion = 22986.518492 eV Total energy + Delta-G solvation = -3883.426005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70552 -40.84921 -39.80093 -36.64542 -36.48299 -34.59186 -34.36369 -31.65123 -30.23684 -29.67029 -28.82438 -27.67409 -27.31784 -25.51736 -23.32996 -22.08822 -21.82792 -21.11375 -20.03375 -19.81302 -18.34487 -18.02993 -17.78102 -17.41067 -16.88013 -16.65311 -16.41379 -16.38237 -15.86667 -15.41923 -15.10259 -14.90667 -14.57593 -14.40904 -14.26400 -14.03843 -13.81848 -13.71571 -13.63261 -13.49117 -13.38137 -13.16954 -13.04450 -12.89357 -12.86369 -12.63851 -12.54970 -12.53030 -12.36340 -11.96505 -11.74863 -11.14688 -11.14266 -11.00045 -10.73936 -10.28918 -9.84726 -9.70850 -9.55945 -8.67054 -8.34989 -6.12956 1.23649 1.42599 1.44729 1.47086 1.50150 1.56211 1.91706 2.08374 2.27031 2.62144 2.81075 2.99311 3.28275 3.40360 3.48951 3.68063 3.74837 3.86748 3.97232 4.00621 4.15671 4.22135 4.26739 4.29042 4.37698 4.39385 4.44104 4.48819 4.49811 4.62940 4.75118 4.77461 4.80743 4.86121 4.88339 4.90436 5.00990 5.08876 5.22507 5.42030 5.42450 5.45689 5.52208 5.79727 6.19788 6.29335 6.41619 7.06506 7.11296 7.16233 8.74185 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.001761 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.120262 B =15898.289484 C =16143.908724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.051 3.949 3 H 0.080 0.920 4 C 0.512 3.488 5 O -0.565 6.565 6 N -0.624 5.624 7 C 0.081 3.919 8 C 0.068 3.932 9 N -0.496 5.496 10 C 0.063 3.937 11 C -0.160 4.160 12 H 0.130 0.870 13 C -0.156 4.156 14 H 0.136 0.864 15 C 0.065 3.935 16 C 0.101 3.899 17 H 0.112 0.888 18 N -0.684 5.684 19 C 0.541 3.459 20 O -0.561 6.561 21 C -0.129 4.129 22 S -0.148 6.148 23 C -0.547 4.547 24 H 0.083 0.917 25 C 0.013 3.987 26 N -0.911 5.911 27 Si 0.999 3.001 28 H -0.268 1.268 29 H -0.278 1.278 30 H -0.259 1.259 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.419 0.581 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.639 -10.029 22.192 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 H 0.098 0.902 4 C 0.299 3.701 5 O -0.443 6.443 6 N -0.358 5.358 7 C -0.061 4.061 8 C -0.074 4.074 9 N -0.221 5.221 10 C -0.064 4.064 11 C -0.181 4.181 12 H 0.148 0.852 13 C -0.177 4.177 14 H 0.154 0.846 15 C -0.062 4.062 16 C -0.006 4.006 17 H 0.129 0.871 18 N -0.335 5.335 19 C 0.327 3.673 20 O -0.439 6.439 21 C -0.280 4.280 22 S 0.079 5.921 23 C -0.695 4.695 24 H 0.101 0.899 25 C -0.192 4.192 26 N -0.547 5.547 27 Si 0.820 3.180 28 H -0.193 1.193 29 H -0.203 1.203 30 H -0.183 1.183 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.128 0.872 44 H 0.256 0.744 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.798 -9.206 23.068 31.149 hybrid contribution 1.275 -0.880 -1.484 2.146 sum -17.522 -10.086 21.584 29.574 Atomic orbital electron populations 1.21714 0.89987 1.03086 1.04181 1.21965 0.99142 0.96454 0.88558 0.90223 1.20824 0.77064 0.87052 0.85119 1.90680 1.52464 1.16576 1.84599 1.47951 1.62441 1.12771 1.12674 1.21772 0.98158 0.98482 0.87719 1.22142 1.01760 0.78677 1.04771 1.66605 1.10413 1.44170 1.00958 1.23199 0.87696 1.01056 0.94441 1.23805 1.03440 0.98290 0.92520 0.85204 1.24043 0.89029 1.03753 1.00827 0.84640 1.22694 1.00006 0.95305 0.88219 1.21641 0.93544 0.97728 0.87690 0.87063 1.45025 1.49294 1.13020 1.26171 1.20072 0.78459 0.83869 0.84856 1.90686 1.63364 1.26870 1.62947 1.23364 1.02530 1.04091 0.98059 1.85561 1.61623 1.11855 1.33066 1.23211 1.35223 0.99647 1.11391 0.89857 1.26126 0.96769 0.94406 1.01864 1.70176 1.39650 1.04194 1.40683 0.84953 0.77401 0.78722 0.76900 1.19276 1.20326 1.18255 0.92627 0.89870 0.89780 0.92671 0.88178 0.92385 0.90387 0.88048 0.91563 0.89975 0.93350 0.92835 0.87246 0.74354 0.87075 0.86875 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.24 71.98 0.67 -0.83 16 2 C 0.05 0.79 1.70 44.17 0.08 0.86 16 3 H 0.08 1.00 6.24 -2.39 -0.01 0.98 16 4 C 0.51 10.00 5.97 87.66 0.52 10.53 16 5 O -0.57 -15.91 14.95 -3.05 -0.05 -15.96 16 6 N -0.62 -8.40 3.27 -871.89 -2.85 -11.25 16 7 C 0.08 0.93 10.43 127.77 1.33 2.26 16 8 C 0.07 0.39 9.71 127.77 1.24 1.63 16 9 N -0.50 -9.42 5.01 -850.42 -4.26 -13.68 16 10 C 0.06 1.32 5.44 85.73 0.47 1.79 16 11 C -0.16 -3.15 6.96 -9.90 -0.07 -3.22 16 12 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 13 C -0.16 -2.85 7.05 -9.90 -0.07 -2.92 16 14 H 0.14 2.14 8.14 -2.39 -0.02 2.13 16 15 C 0.07 1.06 5.56 86.45 0.48 1.54 16 16 C 0.10 2.38 5.97 44.99 0.27 2.64 16 17 H 0.11 3.16 7.40 -2.39 -0.02 3.14 16 18 N -0.68 -17.38 5.56 -442.54 -2.46 -19.84 16 19 C 0.54 19.70 7.85 87.66 0.69 20.39 16 20 O -0.56 -25.62 15.43 -3.05 -0.05 -25.67 16 21 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 22 S -0.15 -8.15 20.57 -56.49 -1.16 -9.32 16 23 C -0.55 -31.02 9.50 67.96 0.65 -30.37 16 24 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 25 C 0.01 0.75 5.49 84.86 0.47 1.21 16 26 N -0.91 -55.66 13.22 21.65 0.29 -55.37 16 27 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 30 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.08 0.60 6.95 -2.39 -0.02 0.58 16 33 H 0.08 0.74 7.24 -2.39 -0.02 0.72 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.52 7.95 -2.39 -0.02 0.50 16 36 H 0.06 0.91 7.36 -2.38 -0.02 0.90 16 37 H 0.08 0.24 6.95 -2.39 -0.02 0.22 16 38 H 0.10 0.18 7.82 -2.39 -0.02 0.16 16 39 H 0.07 0.39 7.05 -2.39 -0.02 0.37 16 40 H 0.08 2.01 7.08 -2.39 -0.02 2.00 16 41 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 42 H 0.05 0.86 7.82 -2.38 -0.02 0.84 16 43 H 0.11 1.43 7.75 -2.39 -0.02 1.41 16 44 H 0.42 7.76 8.83 -92.71 -0.82 6.94 16 45 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 46 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -82.61 395.41 -1.20 -83.81 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.16 Total: 20.94 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 7.15 Total: 0.93 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -9.29 Total: -100.14 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.09 Total: -41.63 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.32 kcal Total: -82.61 -1.20 -83.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113899821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.664 kcal (2) G-P(sol) polarization free energy of solvation -82.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds