Wall clock time and date at job start Wed Apr 1 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81395 * 109.47101 * 2 1 4 4 C 1.81410 * 102.99869 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46916 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46624 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73045 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 H 1.08993 * 115.51974 * 9.41529 * 9 8 6 11 11 C 1.53008 * 117.44056 * 223.99576 * 9 8 6 12 12 H 1.09000 * 119.52103 * 4.08996 * 11 9 8 13 13 C 1.54372 * 118.12868 * 160.68659 * 11 9 8 14 14 N 1.48557 * 104.59581 * 87.22658 * 13 11 9 15 15 C 1.46903 * 111.00361 * 200.95960 * 14 13 11 16 16 C 1.50695 * 109.47526 * 190.00490 * 15 14 13 17 17 O 1.21290 * 119.99766 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00305 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00146 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99777 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00042 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99947 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00090 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47003 * 90.00079 * 23 21 19 25 25 H 1.48501 * 109.46856 * 209.99927 * 23 21 19 26 26 H 1.48499 * 109.46943 * 329.99962 * 23 21 19 27 27 C 1.52015 * 104.44324 * 320.30172 * 14 13 11 28 28 C 1.52999 * 117.44254 * 154.84002 * 9 8 6 29 29 H 1.09003 * 119.52630 * 355.90251 * 28 9 8 30 30 H 1.08999 * 109.46468 * 299.99360 * 1 2 3 31 31 H 1.08993 * 109.47042 * 59.99477 * 1 2 3 32 32 H 1.09003 * 109.46797 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46819 * 240.00359 * 2 1 3 34 34 H 1.08998 * 109.47394 * 120.00806 * 2 1 3 35 35 H 1.09001 * 109.46661 * 60.00734 * 4 3 2 36 36 H 1.08993 * 109.47380 * 300.00472 * 4 3 2 37 37 H 1.09001 * 109.46782 * 60.00898 * 5 4 3 38 38 H 1.08993 * 109.47555 * 300.00455 * 5 4 3 39 39 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 40 40 H 1.08998 * 110.41539 * 206.00882 * 13 11 9 41 41 H 1.09003 * 110.40896 * 328.45271 * 13 11 9 42 42 H 1.09004 * 109.46710 * 310.00546 * 15 14 13 43 43 H 1.09009 * 109.46903 * 70.00076 * 15 14 13 44 44 H 0.96999 * 119.99267 * 359.97438 * 18 16 15 45 45 H 0.96998 * 120.00469 * 179.97438 * 22 21 19 46 46 H 1.09001 * 111.92198 * 281.02182 * 27 14 13 47 47 H 1.08997 * 110.49448 * 157.46418 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 6 4.6066 2.8816 0.0002 6 6 6.1039 2.7116 0.0002 7 8 6.5881 1.5997 0.0056 8 7 6.9051 3.7955 0.0003 9 6 8.3608 3.6303 0.0063 10 1 8.7185 2.6128 -0.1504 11 6 9.1679 4.5241 0.9502 12 1 8.6457 5.1984 1.6289 13 6 10.6018 4.0864 1.3182 14 7 11.4540 4.6519 0.2406 15 6 12.7357 3.9393 0.1544 16 6 13.6640 4.6851 -0.7692 17 8 13.2941 5.7092 -1.3035 18 7 14.9049 4.2136 -1.0024 19 6 15.7492 4.8917 -1.8430 20 1 15.4201 5.8041 -2.3182 21 6 17.0287 4.4059 -2.0830 22 7 17.4293 3.2961 -1.5045 23 14 18.1788 5.3296 -3.2290 24 1 18.9684 6.3158 -2.4485 25 1 19.0994 4.3679 -3.8870 26 1 17.3829 6.0393 -4.2625 27 6 10.6418 4.4528 -1.0289 28 6 9.2022 4.7704 -0.5709 29 1 8.7055 5.6281 -1.0246 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.2406 0.9542 -0.8891 36 1 4.2400 0.9543 0.8909 37 1 4.3032 3.4335 0.8899 38 1 4.3038 3.4326 -0.8901 39 1 6.5179 4.6849 -0.0037 40 1 10.8887 4.4987 2.2855 41 1 10.6761 2.9990 1.3302 42 1 13.1836 3.8760 1.1462 43 1 12.5674 2.9345 -0.2331 44 1 15.2005 3.3943 -0.5753 45 1 18.3223 2.9567 -1.6722 46 1 10.7065 3.4288 -1.3969 47 1 10.9595 5.1554 -1.7992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113942326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:52 Heat of formation + Delta-G solvation = -39.139596 kcal Electronic energy + Delta-G solvation = -25909.958339 eV Core-core repulsion = 22026.792726 eV Total energy + Delta-G solvation = -3883.165613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51835 -39.34518 -37.91628 -35.15006 -33.87025 -33.49066 -33.28060 -32.41394 -31.16772 -28.35140 -27.65714 -25.75334 -24.59308 -23.69999 -22.27090 -21.12640 -20.56925 -20.22850 -19.09065 -17.83346 -17.68050 -17.12421 -16.45533 -16.31277 -15.89062 -15.29119 -15.23955 -15.09258 -14.69458 -14.50833 -14.17556 -14.12842 -13.69900 -13.57523 -13.40637 -13.23141 -12.86305 -12.64051 -12.53290 -12.13207 -12.07260 -11.91683 -11.83250 -11.79566 -11.51306 -11.44388 -11.27470 -11.05228 -10.79028 -10.45432 -10.38059 -10.27861 -10.20455 -10.09971 -9.47326 -9.02367 -8.50370 -8.16755 -8.02425 -7.92814 -6.39294 -3.80018 1.08681 2.06698 2.17626 2.68343 3.19400 3.27784 3.33526 3.55269 3.92117 3.99821 4.16145 4.24004 4.39806 4.40839 4.41705 4.45094 4.51319 4.58253 4.77595 4.86637 4.96260 4.98906 5.16459 5.19803 5.20024 5.24954 5.26334 5.27383 5.37110 5.50612 5.55321 5.58309 5.68580 5.78950 5.84158 5.96787 6.00589 6.20729 6.29457 6.35924 6.94070 7.07464 7.17056 7.57339 7.80816 8.08685 8.64724 9.20804 9.57374 10.09525 10.78602 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031902 B = 0.001426 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.489380 B =19624.067814 C =19863.357702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 S -0.268 6.268 4 C -0.069 4.069 5 C -0.124 4.124 6 C 0.523 3.477 7 O -0.536 6.536 8 N -0.698 5.698 9 C 0.101 3.899 10 H 0.134 0.866 11 C -0.166 4.166 12 H 0.118 0.882 13 C 0.060 3.940 14 N -0.480 5.480 15 C 0.031 3.969 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.066 3.934 28 C -0.161 4.161 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.404 0.596 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.049 0.951 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.159 -5.206 5.957 31.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.235 4.235 3 S -0.042 6.042 4 C -0.218 4.218 5 C -0.165 4.165 6 C 0.308 3.692 7 O -0.412 6.412 8 N -0.347 5.347 9 C -0.005 4.005 10 H 0.151 0.849 11 C -0.187 4.187 12 H 0.136 0.864 13 C -0.068 4.068 14 N -0.205 5.205 15 C -0.101 4.101 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.061 4.061 28 C -0.182 4.182 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.239 0.761 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -30.339 -3.946 5.673 31.116 hybrid contribution 1.304 -1.557 -0.333 2.058 sum -29.035 -5.503 5.340 30.030 Atomic orbital electron populations 1.21522 0.92077 1.02685 1.03261 1.23306 1.00226 0.94784 1.05201 1.86808 1.05514 1.13641 1.98208 1.23059 0.92269 0.99743 1.06687 1.21349 0.91212 0.97985 1.05939 1.20488 0.88771 0.84447 0.75504 1.90735 1.76812 1.24701 1.48985 1.45285 1.05333 1.09291 1.74791 1.21853 0.78491 0.97670 1.02479 0.84862 1.23892 0.97195 1.03799 0.93767 0.86363 1.22632 0.89783 0.97591 0.96820 1.66339 1.01409 1.50537 1.02189 1.22067 0.91417 0.95616 1.00973 1.19677 0.83347 0.87615 0.86229 1.90507 1.75940 1.25762 1.53827 1.41858 1.11360 1.24868 1.42210 1.19693 0.93506 1.07789 1.21779 0.87946 1.25244 0.97788 0.96453 0.98443 1.69611 1.20020 1.20879 1.43913 0.85869 0.79658 0.78828 0.79995 1.20420 1.20970 1.19447 1.23287 0.88304 1.00713 0.93764 1.23898 0.97283 1.00227 0.96747 0.86383 0.91628 0.91608 0.90966 0.89916 0.89932 0.89122 0.89130 0.87694 0.87684 0.76133 0.89343 0.93644 0.89228 0.93037 0.77531 0.91919 0.93270 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.92 37.16 0.37 -0.22 16 2 C -0.09 -0.47 6.66 37.16 0.25 -0.22 16 3 S -0.27 -1.91 21.74 -107.50 -2.34 -4.25 16 4 C -0.07 -0.50 5.23 37.16 0.19 -0.30 16 5 C -0.12 -0.76 5.71 -27.88 -0.16 -0.92 16 6 C 0.52 4.87 7.83 -10.98 -0.09 4.78 16 7 O -0.54 -7.21 15.55 5.56 0.09 -7.12 16 8 N -0.70 -5.72 5.56 -53.80 -0.30 -6.02 16 9 C 0.10 1.08 5.97 -67.93 -0.41 0.68 16 10 H 0.13 1.69 7.40 -51.93 -0.38 1.31 16 11 C -0.17 -1.81 7.05 -89.31 -0.63 -2.44 16 12 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 13 C 0.06 0.77 6.27 -2.19 -0.01 0.75 16 14 N -0.48 -7.99 5.02 -228.26 -1.15 -9.14 16 15 C 0.03 0.56 5.33 -4.98 -0.03 0.54 16 16 C 0.45 10.60 7.63 -10.99 -0.08 10.51 16 17 O -0.58 -15.63 14.85 5.55 0.08 -15.55 16 18 N -0.57 -14.43 5.29 -10.97 -0.06 -14.49 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 23 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 27 C 0.07 1.03 5.91 -0.19 0.00 1.02 16 28 C -0.16 -1.90 6.95 -89.31 -0.62 -2.52 16 29 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.09 0.72 8.10 -51.92 -0.42 0.30 16 36 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 2.15 8.83 -40.82 -0.36 1.79 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.56 8.00 -51.93 -0.42 0.14 16 42 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 43 H 0.05 0.85 7.85 -51.92 -0.41 0.44 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 47 H 0.10 1.88 7.32 -51.93 -0.38 1.50 16 LS Contribution 403.90 15.07 6.09 6.09 Total: -1.00 -33.66 403.90 -11.02 -44.67 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.68 Total: 9.99 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.46 Total: 3.66 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.78 Total: -53.62 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -2.34 Total: -4.25 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.66 -11.02 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113942326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.535 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds