Wall clock time and date at job start Wed Apr 1 2020 00:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 103.00011 * 2 1 4 4 C 1.52990 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47337 * 304.99933 * 4 3 2 6 6 C 1.53007 * 109.47358 * 64.99606 * 4 3 2 7 7 C 1.50703 * 109.47398 * 184.99848 * 4 3 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 4 3 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 4 11 11 H 1.09004 * 115.51982 * 350.14327 * 10 9 7 12 12 C 1.53005 * 117.44191 * 204.71985 * 10 9 7 13 13 H 1.09001 * 119.52274 * 5.65060 * 12 10 9 14 14 C 1.54377 * 118.12385 * 160.68214 * 12 10 9 15 15 N 1.48556 * 104.59439 * 87.23559 * 14 12 10 16 16 C 1.46895 * 111.00170 * 200.95515 * 15 14 12 17 17 C 1.50704 * 109.47284 * 169.99858 * 16 15 14 18 18 O 1.21293 * 120.00054 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00216 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00480 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99666 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00341 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99997 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99782 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47166 * 89.99997 * 24 22 20 26 26 H 1.48500 * 109.47188 * 209.99567 * 24 22 20 27 27 H 1.48493 * 109.47272 * 330.00036 * 24 22 20 28 28 C 1.48562 * 104.22048 * 320.51284 * 15 14 12 29 29 C 1.52999 * 117.44391 * 135.49708 * 10 9 7 30 30 H 1.09000 * 119.52999 * 355.89725 * 29 10 9 31 31 H 1.09003 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47286 * 299.99791 * 1 2 3 33 33 H 1.09002 * 109.47366 * 60.00333 * 1 2 3 34 34 H 1.08997 * 109.47121 * 59.99144 * 3 2 1 35 35 H 1.09002 * 109.46685 * 300.00244 * 3 2 1 36 36 H 1.09003 * 109.46582 * 60.00448 * 6 4 3 37 37 H 1.09001 * 109.46852 * 180.02562 * 6 4 3 38 38 H 1.08993 * 109.46731 * 300.00313 * 6 4 3 39 39 H 0.97001 * 119.99727 * 359.97438 * 9 7 4 40 40 H 1.09000 * 110.41086 * 206.00755 * 14 12 10 41 41 H 1.08996 * 110.41604 * 328.45332 * 14 12 10 42 42 H 1.08999 * 109.47485 * 290.00067 * 16 15 14 43 43 H 1.09003 * 109.47054 * 49.99942 * 16 15 14 44 44 H 0.97007 * 120.00077 * 359.97438 * 19 17 16 45 45 H 0.96989 * 120.00158 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.41117 * 158.26414 * 28 15 14 47 47 H 1.08996 * 110.40936 * 280.58341 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.1701 1.3952 0.8409 6 6 4.3172 1.3918 -1.3083 7 6 4.0819 3.4030 0.1231 8 8 3.1952 4.2267 0.2035 9 7 5.3708 3.7962 0.1436 10 6 5.7010 5.2179 0.2700 11 1 4.8607 5.9055 0.1742 12 6 7.0547 5.6786 -0.2744 13 1 7.6848 4.9722 -0.8150 14 6 7.2461 7.1812 -0.5723 15 7 7.6969 7.7640 0.7177 16 6 7.4528 9.2121 0.7550 17 6 7.6898 9.7257 2.1518 18 8 8.0282 8.9606 3.0300 19 7 7.5247 11.0350 2.4255 20 6 7.7397 11.5022 3.6964 21 1 8.0419 10.8210 4.4781 22 6 7.5700 12.8521 3.9784 23 7 7.7767 13.3000 5.1964 24 14 7.0481 14.0303 2.6261 25 1 5.5657 14.1079 2.5820 26 1 7.6062 15.3786 2.9015 27 1 7.5572 13.5412 1.3197 28 6 6.8816 7.0602 1.7409 29 6 6.8149 5.5989 1.2473 30 1 7.2777 4.8268 1.8619 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8030 2.2372 0.8899 35 1 1.8030 2.2371 -0.8900 36 1 3.8894 1.9367 -2.1499 37 1 5.4003 1.5143 -1.3085 38 1 4.0715 0.3337 -1.3978 39 1 6.0799 3.1375 0.0789 40 1 8.0070 7.3227 -1.3398 41 1 6.3029 7.6303 -0.8834 42 1 8.1308 9.7128 0.0639 43 1 6.4222 9.4145 0.4634 44 1 7.2536 11.6469 1.7233 45 1 7.6578 14.2422 5.3934 46 1 7.3681 7.1105 2.7151 47 1 5.8821 7.4917 1.7933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114041221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:20 Heat of formation + Delta-G solvation = -27.052315 kcal Electronic energy + Delta-G solvation = -26699.301929 eV Core-core repulsion = 22816.660459 eV Total energy + Delta-G solvation = -3882.641470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67761 -39.63540 -38.15888 -35.27282 -35.02459 -33.96403 -32.55012 -31.67855 -29.52091 -28.31240 -27.91709 -27.52487 -25.01121 -24.01814 -22.11103 -21.07976 -20.35887 -20.20815 -19.38232 -18.22714 -17.73281 -17.18883 -16.33461 -15.92978 -15.89218 -15.37625 -15.19829 -14.81435 -14.67986 -14.53222 -14.20410 -13.84605 -13.76392 -13.58672 -13.39881 -13.24946 -12.96672 -12.78053 -12.60054 -12.49819 -12.37817 -12.06350 -11.91088 -11.88153 -11.74352 -11.43193 -11.36889 -11.09201 -10.91256 -10.60224 -10.48197 -10.17573 -10.06137 -9.98901 -9.57263 -9.00363 -8.54275 -8.22227 -8.13002 -8.08908 -6.32727 -3.84237 1.14582 2.08750 2.20331 2.68308 3.01934 3.06124 3.14477 3.54923 3.70100 3.99574 4.05674 4.09282 4.29323 4.34001 4.47583 4.58493 4.68655 4.69485 4.72307 4.76375 4.86391 5.03331 5.06331 5.13767 5.19835 5.25218 5.27430 5.30394 5.44913 5.48752 5.59082 5.62877 5.66331 5.69032 5.77007 5.88124 5.99008 6.05089 6.25597 6.55657 7.02671 7.09387 7.11587 7.56103 7.83118 8.12642 8.57586 8.93122 9.40210 9.79998 10.80231 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.001757 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.956180 B =15936.810965 C =16526.176481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.261 6.261 3 C -0.067 4.067 4 C -0.093 4.093 5 H 0.109 0.891 6 C -0.147 4.147 7 C 0.527 3.473 8 O -0.534 6.534 9 N -0.696 5.696 10 C 0.102 3.898 11 H 0.133 0.867 12 C -0.169 4.169 13 H 0.119 0.881 14 C 0.060 3.940 15 N -0.486 5.486 16 C 0.031 3.969 17 C 0.451 3.549 18 O -0.563 6.563 19 N -0.588 5.588 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.064 3.936 29 C -0.161 4.161 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.403 0.597 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.123 0.877 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 -24.361 -16.848 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.035 6.035 3 C -0.215 4.215 4 C -0.116 4.116 5 H 0.127 0.873 6 C -0.204 4.204 7 C 0.311 3.689 8 O -0.410 6.410 9 N -0.345 5.345 10 C -0.005 4.005 11 H 0.150 0.850 12 C -0.189 4.189 13 H 0.137 0.863 14 C -0.068 4.068 15 N -0.211 5.211 16 C -0.101 4.101 17 C 0.237 3.763 18 O -0.445 6.445 19 N -0.227 5.227 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.194 1.194 28 C -0.063 4.063 29 C -0.181 4.181 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.238 0.762 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.883 -25.026 -15.947 30.976 hybrid contribution -1.671 2.028 -1.135 2.863 sum -10.555 -22.998 -17.082 30.530 Atomic orbital electron populations 1.23394 0.93812 1.06558 1.05222 1.86708 1.07850 1.10869 1.98100 1.23216 0.97603 0.94061 1.06670 1.21033 0.95226 0.93264 1.02050 0.87340 1.21867 1.00859 1.02659 0.95046 1.20453 0.82338 0.90590 0.75483 1.90733 1.46877 1.54555 1.48864 1.45245 1.07620 1.07421 1.74181 1.21833 0.93223 0.82957 1.02450 0.84977 1.23805 0.99081 0.97732 0.98297 0.86350 1.22690 0.99329 0.91227 0.93590 1.65414 1.51535 1.02247 1.01869 1.22138 1.00399 0.89726 0.97841 1.19581 0.84505 0.82927 0.89330 1.90490 1.50838 1.55231 1.47944 1.42189 1.62194 1.07165 1.11124 1.19432 1.43958 0.94126 0.85886 0.86217 1.25040 0.97640 0.96868 0.96548 1.69616 1.48049 1.15599 1.18711 0.86677 0.79512 0.81626 0.81629 1.19636 1.20126 1.19449 1.22876 0.96170 0.88398 0.98879 1.24122 1.02198 0.99616 0.92207 0.86362 0.87979 0.90309 0.90349 0.88962 0.89240 0.91711 0.91738 0.90158 0.76216 0.89416 0.93654 0.88826 0.93067 0.79657 0.91581 0.85888 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.76 101.05 1.09 0.47 16 2 S -0.26 -1.87 21.19 -107.50 -2.28 -4.15 16 3 C -0.07 -0.52 4.73 37.15 0.18 -0.34 16 4 C -0.09 -0.65 2.72 -91.77 -0.25 -0.90 16 5 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.15 -0.78 8.92 37.16 0.33 -0.45 16 7 C 0.53 5.24 7.15 -10.98 -0.08 5.16 16 8 O -0.53 -7.54 15.49 5.55 0.09 -7.45 16 9 N -0.70 -5.99 5.46 -53.80 -0.29 -6.28 16 10 C 0.10 1.12 5.97 -67.93 -0.41 0.71 16 11 H 0.13 1.74 7.40 -51.93 -0.38 1.35 16 12 C -0.17 -1.77 7.05 -89.24 -0.63 -2.40 16 13 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.06 0.72 6.30 -2.19 -0.01 0.70 16 15 N -0.49 -7.76 5.33 -231.41 -1.23 -9.00 16 16 C 0.03 0.52 5.55 -4.98 -0.03 0.49 16 17 C 0.45 10.15 7.50 -10.98 -0.08 10.07 16 18 O -0.56 -14.65 13.24 5.55 0.07 -14.57 16 19 N -0.59 -13.95 5.09 -10.96 -0.06 -14.00 16 20 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 24 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 28 C 0.06 1.05 5.12 -2.18 -0.01 1.03 16 29 C -0.16 -1.99 7.05 -89.24 -0.63 -2.62 16 30 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.10 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 34 H 0.09 0.81 7.96 -51.93 -0.41 0.39 16 35 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.25 7.56 -51.93 -0.39 -0.14 16 38 H 0.08 0.42 7.13 -51.93 -0.37 0.05 16 39 H 0.40 2.31 8.24 -40.82 -0.34 1.98 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.52 7.82 -51.93 -0.41 0.12 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 44 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.12 2.43 6.05 -51.93 -0.31 2.11 16 47 H 0.04 0.69 7.99 -51.93 -0.42 0.28 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -33.93 393.61 -9.95 -43.88 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -7.46 Total: 11.67 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.78 Total: 4.23 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.81 Total: -54.16 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.16 Total: -22.03 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.28 Total: -4.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.93 -9.95 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114041221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.830 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds