Wall clock time and date at job start Wed Apr 1 2020 00:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 103.00011 * 2 1 4 4 C 1.52990 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47337 * 304.99933 * 4 3 2 6 6 C 1.53007 * 109.47358 * 64.99606 * 4 3 2 7 7 C 1.50703 * 109.47398 * 184.99848 * 4 3 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 4 3 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 4 11 11 H 1.09004 * 115.51982 * 350.14327 * 10 9 7 12 12 C 1.53005 * 117.44191 * 204.71985 * 10 9 7 13 13 H 1.09001 * 119.52274 * 5.65060 * 12 10 9 14 14 C 1.54377 * 118.12385 * 160.68214 * 12 10 9 15 15 N 1.48556 * 104.59439 * 87.23559 * 14 12 10 16 16 C 1.46895 * 111.00170 * 200.95515 * 15 14 12 17 17 C 1.50704 * 109.47284 * 169.99858 * 16 15 14 18 18 O 1.21293 * 120.00054 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00216 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00480 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99666 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00341 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99997 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99782 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47166 * 89.99997 * 24 22 20 26 26 H 1.48500 * 109.47188 * 209.99567 * 24 22 20 27 27 H 1.48493 * 109.47272 * 330.00036 * 24 22 20 28 28 C 1.48562 * 104.22048 * 320.51284 * 15 14 12 29 29 C 1.52999 * 117.44391 * 135.49708 * 10 9 7 30 30 H 1.09000 * 119.52999 * 355.89725 * 29 10 9 31 31 H 1.09003 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47286 * 299.99791 * 1 2 3 33 33 H 1.09002 * 109.47366 * 60.00333 * 1 2 3 34 34 H 1.08997 * 109.47121 * 59.99144 * 3 2 1 35 35 H 1.09002 * 109.46685 * 300.00244 * 3 2 1 36 36 H 1.09003 * 109.46582 * 60.00448 * 6 4 3 37 37 H 1.09001 * 109.46852 * 180.02562 * 6 4 3 38 38 H 1.08993 * 109.46731 * 300.00313 * 6 4 3 39 39 H 0.97001 * 119.99727 * 359.97438 * 9 7 4 40 40 H 1.09000 * 110.41086 * 206.00755 * 14 12 10 41 41 H 1.08996 * 110.41604 * 328.45332 * 14 12 10 42 42 H 1.08999 * 109.47485 * 290.00067 * 16 15 14 43 43 H 1.09003 * 109.47054 * 49.99942 * 16 15 14 44 44 H 0.97007 * 120.00077 * 359.97438 * 19 17 16 45 45 H 0.96989 * 120.00158 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.41117 * 158.26414 * 28 15 14 47 47 H 1.08996 * 110.40936 * 280.58341 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.1701 1.3952 0.8409 6 6 4.3172 1.3918 -1.3083 7 6 4.0819 3.4030 0.1231 8 8 3.1952 4.2267 0.2035 9 7 5.3708 3.7962 0.1436 10 6 5.7010 5.2179 0.2700 11 1 4.8607 5.9055 0.1742 12 6 7.0547 5.6786 -0.2744 13 1 7.6848 4.9722 -0.8150 14 6 7.2461 7.1812 -0.5723 15 7 7.6969 7.7640 0.7177 16 6 7.4528 9.2121 0.7550 17 6 7.6898 9.7257 2.1518 18 8 8.0282 8.9606 3.0300 19 7 7.5247 11.0350 2.4255 20 6 7.7397 11.5022 3.6964 21 1 8.0419 10.8210 4.4781 22 6 7.5700 12.8521 3.9784 23 7 7.7767 13.3000 5.1964 24 14 7.0481 14.0303 2.6261 25 1 5.5657 14.1079 2.5820 26 1 7.6062 15.3786 2.9015 27 1 7.5572 13.5412 1.3197 28 6 6.8816 7.0602 1.7409 29 6 6.8149 5.5989 1.2473 30 1 7.2777 4.8268 1.8619 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8030 2.2372 0.8899 35 1 1.8030 2.2371 -0.8900 36 1 3.8894 1.9367 -2.1499 37 1 5.4003 1.5143 -1.3085 38 1 4.0715 0.3337 -1.3978 39 1 6.0799 3.1375 0.0789 40 1 8.0070 7.3227 -1.3398 41 1 6.3029 7.6303 -0.8834 42 1 8.1308 9.7128 0.0639 43 1 6.4222 9.4145 0.4634 44 1 7.2536 11.6469 1.7233 45 1 7.6578 14.2422 5.3934 46 1 7.3681 7.1105 2.7151 47 1 5.8821 7.4917 1.7933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114041221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:19 Heat of formation + Delta-G solvation = -53.460089 kcal Electronic energy + Delta-G solvation = -26700.447056 eV Core-core repulsion = 22816.660459 eV Total energy + Delta-G solvation = -3883.786597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63615 -40.75614 -39.76140 -36.48133 -35.82713 -35.67352 -33.83422 -33.48372 -29.94844 -29.40967 -29.26686 -28.10876 -26.56655 -25.09501 -23.24310 -22.02938 -21.43906 -21.24285 -20.97415 -20.13368 -18.44228 -18.07147 -17.62758 -16.98041 -16.82134 -16.61175 -16.42339 -16.30846 -15.79461 -15.29377 -15.21872 -14.93182 -14.88701 -14.65900 -14.42973 -14.29672 -14.12216 -13.91014 -13.77133 -13.37753 -13.30412 -13.22390 -13.04649 -12.94824 -12.53691 -12.47039 -12.40206 -12.36321 -12.25349 -11.99845 -11.92526 -11.50878 -11.13978 -11.06872 -10.86570 -10.32451 -10.25118 -9.84517 -9.41498 -8.68330 -8.42991 -6.03885 0.60608 1.28894 1.33879 1.41179 1.43058 1.57835 1.90505 1.91853 2.21408 2.57350 2.74645 3.12936 3.17348 3.46041 3.57979 3.65432 3.72095 3.78635 3.82333 4.04286 4.18405 4.20139 4.28493 4.30176 4.33944 4.34301 4.47027 4.49399 4.54381 4.62188 4.64082 4.79873 4.86638 4.88136 4.95699 4.97152 5.11809 5.22116 5.27949 5.40144 5.51024 5.77798 5.87172 6.00860 6.40214 6.57156 6.86233 7.10413 7.36702 7.93554 8.74523 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.001757 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.956180 B =15936.810965 C =16526.176481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.274 6.274 3 C -0.064 4.064 4 C -0.085 4.085 5 H 0.123 0.877 6 C -0.141 4.141 7 C 0.525 3.475 8 O -0.581 6.581 9 N -0.681 5.681 10 C 0.109 3.891 11 H 0.110 0.890 12 C -0.141 4.141 13 H 0.152 0.848 14 C 0.057 3.943 15 N -0.504 5.504 16 C 0.041 3.959 17 C 0.448 3.552 18 O -0.605 6.605 19 N -0.590 5.590 20 C -0.328 4.328 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.230 1.230 28 C 0.065 3.935 29 C -0.175 4.175 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.421 0.579 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.126 0.874 43 H 0.077 0.923 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.078 0.922 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 -25.286 -21.168 34.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.049 6.049 3 C -0.212 4.212 4 C -0.107 4.107 5 H 0.140 0.860 6 C -0.199 4.199 7 C 0.312 3.688 8 O -0.460 6.460 9 N -0.331 5.331 10 C 0.001 3.999 11 H 0.128 0.872 12 C -0.161 4.161 13 H 0.169 0.831 14 C -0.070 4.070 15 N -0.228 5.228 16 C -0.090 4.090 17 C 0.236 3.764 18 O -0.490 6.490 19 N -0.231 5.231 20 C -0.458 4.458 21 H 0.074 0.926 22 C -0.213 4.213 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.153 1.153 28 C -0.063 4.063 29 C -0.196 4.196 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.259 0.741 40 H 0.132 0.868 41 H 0.072 0.928 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.083 -26.002 -20.299 34.215 hybrid contribution -1.607 2.185 0.326 2.732 sum -10.690 -23.817 -19.973 32.870 Atomic orbital electron populations 1.23480 0.92032 1.07587 1.05639 1.86694 1.09941 1.10130 1.98107 1.23136 0.98214 0.94364 1.05528 1.21038 0.94849 0.91110 1.03697 0.85965 1.21857 1.01979 1.02517 0.93523 1.20999 0.82051 0.91476 0.74288 1.90718 1.48252 1.56007 1.51054 1.45107 1.07891 1.06804 1.73276 1.21553 0.92625 0.83944 1.01729 0.87212 1.23928 0.98363 0.97664 0.96103 0.83086 1.22844 1.00559 0.91733 0.91870 1.65408 1.52031 1.01737 1.03669 1.22098 1.02719 0.90572 0.93621 1.20824 0.81994 0.82094 0.91499 1.90500 1.51915 1.56302 1.50245 1.42016 1.63076 1.08120 1.09909 1.19001 1.45852 0.94061 0.86848 0.92599 1.26107 0.96769 0.98573 0.99851 1.69798 1.49262 1.16517 1.21800 0.85380 0.79526 0.77846 0.78885 1.18358 1.19880 1.15340 1.22598 0.94638 0.91433 0.97646 1.23920 1.04393 0.97401 0.93860 0.85566 0.86612 0.90165 0.89720 0.90611 0.89915 0.92258 0.89705 0.89819 0.74115 0.86841 0.92780 0.85592 0.90489 0.77505 0.91125 0.90418 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.76 113.37 1.22 0.14 16 2 S -0.27 -3.63 21.19 -56.49 -1.20 -4.82 16 3 C -0.06 -0.95 4.73 71.98 0.34 -0.61 16 4 C -0.08 -1.05 2.72 -11.54 -0.03 -1.08 16 5 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 6 C -0.14 -1.15 8.92 71.98 0.64 -0.51 16 7 C 0.53 9.90 7.15 87.66 0.63 10.52 16 8 O -0.58 -16.52 15.49 -3.04 -0.05 -16.57 16 9 N -0.68 -10.28 5.46 -442.52 -2.41 -12.70 16 10 C 0.11 2.22 5.97 44.99 0.27 2.49 16 11 H 0.11 2.84 7.40 -2.38 -0.02 2.82 16 12 C -0.14 -2.49 7.05 -9.90 -0.07 -2.56 16 13 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 14 C 0.06 1.16 6.30 86.45 0.54 1.71 16 15 N -0.50 -15.32 5.33 -886.06 -4.73 -20.05 16 16 C 0.04 1.30 5.55 85.56 0.47 1.77 16 17 C 0.45 20.50 7.50 87.66 0.66 21.15 16 18 O -0.61 -33.42 13.24 -3.07 -0.04 -33.46 16 19 N -0.59 -28.15 5.09 -306.98 -1.56 -29.71 16 20 C -0.33 -19.42 10.16 84.04 0.85 -18.57 16 21 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.93 -56.69 13.96 21.66 0.30 -56.38 16 24 Si 0.96 39.13 27.74 68.60 1.90 41.03 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 28 C 0.06 2.17 5.12 86.45 0.44 2.61 16 29 C -0.18 -4.19 7.05 -9.90 -0.07 -4.26 16 30 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 1.36 7.96 -2.39 -0.02 1.34 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.35 7.56 -2.39 -0.02 0.33 16 38 H 0.08 0.68 7.13 -2.39 -0.02 0.66 16 39 H 0.42 3.43 8.24 -92.71 -0.76 2.66 16 40 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 1.05 7.82 -2.39 -0.02 1.03 16 42 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.08 2.07 7.88 -2.39 -0.02 2.06 16 44 H 0.39 15.40 5.76 -92.70 -0.53 14.87 16 45 H 0.28 15.49 8.31 -92.72 -0.77 14.72 16 46 H 0.08 3.31 6.05 -2.38 -0.01 3.30 16 47 H 0.02 0.86 7.99 -2.39 -0.02 0.85 16 Total: -1.00 -82.06 393.61 -1.78 -83.85 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.37 Total: 36.34 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.37 Total: 12.48 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -8.40 Total: -118.84 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.09 Total: -50.03 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.20 Total: -4.82 kcal Total: -82.06 -1.78 -83.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114041221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.386 kcal (2) G-P(sol) polarization free energy of solvation -82.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds