Wall clock time and date at job start Wed Apr 1 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 103.00143 * 2 1 4 4 C 1.53000 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 55.00001 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99789 * 4 3 2 7 7 C 1.50700 * 109.46738 * 175.00215 * 4 3 2 8 8 O 1.21278 * 120.00548 * 359.97438 * 7 4 3 9 9 N 1.34782 * 119.99764 * 179.97438 * 7 4 3 10 10 C 1.46505 * 120.00001 * 179.97438 * 9 7 4 11 11 H 1.08997 * 115.51470 * 350.42378 * 10 9 7 12 12 C 1.52998 * 117.44318 * 205.00048 * 10 9 7 13 13 H 1.09002 * 119.52500 * 4.09124 * 12 10 9 14 14 C 1.54378 * 118.12807 * 159.13352 * 12 10 9 15 15 N 1.48561 * 104.59480 * 87.22837 * 14 12 10 16 16 C 1.46903 * 110.99773 * 200.96174 * 15 14 12 17 17 C 1.50697 * 109.47034 * 189.99859 * 16 15 14 18 18 O 1.21299 * 120.00184 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00079 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00133 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99365 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00065 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99923 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00181 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47249 * 89.99790 * 24 22 20 26 26 H 1.48501 * 109.47052 * 210.00062 * 24 22 20 27 27 H 1.48497 * 109.46815 * 329.99653 * 24 22 20 28 28 C 1.48558 * 104.22187 * 320.51733 * 15 14 12 29 29 C 1.53001 * 117.44146 * 135.77001 * 10 9 7 30 30 H 1.09000 * 119.52555 * 355.91339 * 29 10 9 31 31 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46846 * 299.99983 * 1 2 3 33 33 H 1.09007 * 109.47453 * 59.99610 * 1 2 3 34 34 H 1.09002 * 109.47124 * 60.00087 * 3 2 1 35 35 H 1.09001 * 109.46975 * 300.00209 * 3 2 1 36 36 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 37 37 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 38 38 H 1.09004 * 109.46908 * 180.02562 * 6 4 3 39 39 H 0.97002 * 119.99790 * 359.97438 * 9 7 4 40 40 H 1.08992 * 110.41450 * 206.00713 * 14 12 10 41 41 H 1.09010 * 110.40886 * 328.45187 * 14 12 10 42 42 H 1.09000 * 109.47464 * 309.99978 * 16 15 14 43 43 H 1.09005 * 109.47261 * 70.00343 * 16 15 14 44 44 H 0.96996 * 120.00185 * 0.02562 * 19 17 16 45 45 H 0.97002 * 119.99600 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.41454 * 158.26386 * 28 15 14 47 47 H 1.09006 * 110.41050 * 280.58381 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1694 1.3953 -0.8426 6 6 4.3183 1.3915 1.3065 7 6 4.0819 3.4029 -0.1244 8 8 3.1953 4.2266 -0.2047 9 7 5.3709 3.7961 -0.1459 10 6 5.7011 5.2183 -0.2668 11 1 4.8635 5.8768 -0.4969 12 6 7.0646 5.5776 -0.8606 13 1 7.7136 4.7854 -1.2337 14 6 7.2521 6.9926 -1.4488 15 7 7.6654 7.8273 -0.2914 16 6 7.4094 9.2504 -0.5507 17 6 8.0580 10.0818 0.5259 18 8 8.6727 9.5419 1.4215 19 7 7.9551 11.4252 0.4938 20 6 8.5457 12.1816 1.4730 21 1 9.0937 11.7008 2.2699 22 6 8.4391 13.5666 1.4402 23 7 9.0048 14.2915 2.3791 24 14 7.4907 14.3980 0.0623 25 1 6.0677 14.5463 0.4601 26 1 8.0733 15.7383 -0.2010 27 1 7.5772 13.5704 -1.1676 28 6 6.8298 7.3322 0.8326 29 6 6.7984 5.7676 0.6470 30 1 7.2494 5.1167 1.3961 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8900 34 1 1.8032 2.2372 0.8900 35 1 1.8031 2.2371 -0.8900 36 1 3.8912 1.9361 2.1485 37 1 4.0727 0.3333 1.3960 38 1 5.4014 1.5147 1.3062 39 1 6.0800 3.1373 -0.0813 40 1 8.0312 6.9873 -2.2110 41 1 6.3137 7.3585 -1.8656 42 1 7.8250 9.5236 -1.5206 43 1 6.3345 9.4319 -0.5518 44 1 7.4632 11.8570 -0.2221 45 1 8.9300 15.2584 2.3563 46 1 7.2908 7.5825 1.7881 47 1 5.8259 7.7529 0.7740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114041223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:23 Heat of formation + Delta-G solvation = -27.905778 kcal Electronic energy + Delta-G solvation = -26562.195830 eV Core-core repulsion = 22679.517351 eV Total energy + Delta-G solvation = -3882.678478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67407 -39.57294 -38.11249 -35.32779 -35.05467 -33.90984 -32.59655 -31.62468 -29.54743 -28.31462 -27.90257 -27.53575 -25.00661 -24.03542 -22.11585 -21.15129 -20.46170 -20.20333 -19.30936 -18.24956 -17.76762 -17.22010 -16.36099 -15.98898 -15.90486 -15.34846 -15.18964 -14.82555 -14.70158 -14.54779 -14.22961 -13.88244 -13.75054 -13.56305 -13.39537 -13.26332 -12.93766 -12.78613 -12.62628 -12.59941 -12.37544 -12.17079 -11.91637 -11.81365 -11.77363 -11.45749 -11.41802 -11.15967 -10.91601 -10.58665 -10.51116 -10.22634 -10.10589 -9.96261 -9.54366 -9.05203 -8.63046 -8.17465 -8.15884 -8.10661 -6.29562 -3.80902 1.11605 2.05775 2.15888 2.63968 3.03631 3.07763 3.15994 3.50750 3.75460 3.92997 4.02525 4.11601 4.26605 4.30470 4.41968 4.55031 4.65418 4.65889 4.66743 4.73155 4.83152 5.01005 5.03550 5.09940 5.12521 5.21648 5.22575 5.28464 5.39915 5.44070 5.53103 5.58467 5.63570 5.68810 5.69885 5.87866 5.93780 5.96724 6.17448 6.30048 6.94655 7.04428 7.06271 7.59892 7.78479 8.15873 8.62043 8.96995 9.44156 9.85438 10.83625 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.001667 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.339836 B =16797.281088 C =17153.801408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.261 6.261 3 C -0.067 4.067 4 C -0.093 4.093 5 H 0.108 0.892 6 C -0.148 4.148 7 C 0.527 3.473 8 O -0.535 6.535 9 N -0.696 5.696 10 C 0.101 3.899 11 H 0.133 0.867 12 C -0.168 4.168 13 H 0.118 0.882 14 C 0.061 3.939 15 N -0.483 5.483 16 C 0.031 3.969 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.593 5.593 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.068 3.932 29 C -0.159 4.159 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.403 0.597 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.103 0.897 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 -28.009 -9.254 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.035 6.035 3 C -0.216 4.216 4 C -0.115 4.115 5 H 0.126 0.874 6 C -0.205 4.205 7 C 0.312 3.688 8 O -0.411 6.411 9 N -0.345 5.345 10 C -0.006 4.006 11 H 0.151 0.849 12 C -0.188 4.188 13 H 0.136 0.864 14 C -0.067 4.067 15 N -0.207 5.207 16 C -0.101 4.101 17 C 0.240 3.760 18 O -0.439 6.439 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.060 4.060 29 C -0.180 4.180 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.238 0.762 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.952 -28.477 -8.493 32.416 hybrid contribution -1.960 1.717 -1.267 2.897 sum -14.912 -26.760 -9.760 32.152 Atomic orbital electron populations 1.23397 0.93806 1.06569 1.05218 1.86717 1.07852 1.10839 1.98099 1.23220 0.97601 0.94085 1.06655 1.21030 0.95213 0.93208 1.02067 0.87417 1.21877 1.00915 1.02683 0.95069 1.20461 0.82323 0.90603 0.75443 1.90728 1.46886 1.54568 1.48902 1.45267 1.07648 1.07379 1.74240 1.21870 0.93268 0.82799 1.02646 0.84897 1.23799 0.98659 0.98968 0.97386 0.86376 1.22660 0.99668 0.90102 0.94250 1.65254 1.51153 1.01361 1.02897 1.22099 0.99124 0.89044 0.99819 1.19579 0.85800 0.82402 0.88244 1.90555 1.44561 1.71278 1.37516 1.42205 1.49758 1.05538 1.25741 1.19425 1.30433 0.88584 1.04800 0.86282 1.25026 0.97683 0.96030 0.97407 1.69626 1.43458 1.06260 1.32888 0.86679 0.80670 0.80135 0.81949 1.19680 1.20186 1.19502 1.23252 0.95500 0.89664 0.97557 1.24687 1.02368 0.97248 0.93681 0.85870 0.87970 0.90299 0.90362 0.89165 0.89054 0.91592 0.90132 0.91701 0.76177 0.89283 0.93604 0.88989 0.92891 0.79758 0.91652 0.87889 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.76 101.05 1.09 0.51 16 2 S -0.26 -1.78 21.19 -107.50 -2.28 -4.05 16 3 C -0.07 -0.49 4.73 37.16 0.18 -0.31 16 4 C -0.09 -0.60 2.72 -91.77 -0.25 -0.85 16 5 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 6 C -0.15 -0.80 8.92 37.16 0.33 -0.46 16 7 C 0.53 4.93 7.15 -10.98 -0.08 4.85 16 8 O -0.53 -7.18 15.49 5.56 0.09 -7.09 16 9 N -0.70 -5.58 5.46 -53.80 -0.29 -5.88 16 10 C 0.10 1.03 5.92 -67.93 -0.40 0.63 16 11 H 0.13 1.62 7.40 -51.93 -0.38 1.24 16 12 C -0.17 -1.70 6.97 -89.24 -0.62 -2.32 16 13 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.06 0.72 6.26 -2.18 -0.01 0.71 16 15 N -0.48 -7.63 4.98 -229.23 -1.14 -8.77 16 16 C 0.03 0.52 5.32 -4.98 -0.03 0.49 16 17 C 0.45 10.35 7.63 -10.99 -0.08 10.27 16 18 O -0.56 -14.95 14.80 5.54 0.08 -14.87 16 19 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 20 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 24 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 28 C 0.07 1.03 5.78 -0.40 0.00 1.03 16 29 C -0.16 -1.83 7.33 -87.45 -0.64 -2.48 16 30 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.09 0.73 7.95 -51.92 -0.41 0.32 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.43 7.13 -51.93 -0.37 0.06 16 38 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 39 H 0.40 2.12 8.24 -40.82 -0.34 1.78 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.50 8.00 -51.92 -0.42 0.09 16 42 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 43 H 0.05 0.79 7.77 -51.93 -0.40 0.38 16 44 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.10 1.86 7.24 -51.93 -0.38 1.48 16 47 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -34.76 396.43 -9.85 -44.61 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.51 Total: 10.35 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.77 Total: 4.32 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.72 Total: -53.98 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.17 Total: -21.96 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.28 Total: -4.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.76 -9.85 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114041223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.701 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds