Wall clock time and date at job start Wed Apr 1 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 103.00143 * 2 1 4 4 C 1.53000 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 55.00001 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99789 * 4 3 2 7 7 C 1.50700 * 109.46738 * 175.00215 * 4 3 2 8 8 O 1.21278 * 120.00548 * 359.97438 * 7 4 3 9 9 N 1.34782 * 119.99764 * 179.97438 * 7 4 3 10 10 C 1.46505 * 120.00001 * 179.97438 * 9 7 4 11 11 H 1.08997 * 115.51470 * 350.42378 * 10 9 7 12 12 C 1.52998 * 117.44318 * 205.00048 * 10 9 7 13 13 H 1.09002 * 119.52500 * 4.09124 * 12 10 9 14 14 C 1.54378 * 118.12807 * 159.13352 * 12 10 9 15 15 N 1.48561 * 104.59480 * 87.22837 * 14 12 10 16 16 C 1.46903 * 110.99773 * 200.96174 * 15 14 12 17 17 C 1.50697 * 109.47034 * 189.99859 * 16 15 14 18 18 O 1.21299 * 120.00184 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00079 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00133 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99365 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00065 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99923 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00181 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47249 * 89.99790 * 24 22 20 26 26 H 1.48501 * 109.47052 * 210.00062 * 24 22 20 27 27 H 1.48497 * 109.46815 * 329.99653 * 24 22 20 28 28 C 1.48558 * 104.22187 * 320.51733 * 15 14 12 29 29 C 1.53001 * 117.44146 * 135.77001 * 10 9 7 30 30 H 1.09000 * 119.52555 * 355.91339 * 29 10 9 31 31 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46846 * 299.99983 * 1 2 3 33 33 H 1.09007 * 109.47453 * 59.99610 * 1 2 3 34 34 H 1.09002 * 109.47124 * 60.00087 * 3 2 1 35 35 H 1.09001 * 109.46975 * 300.00209 * 3 2 1 36 36 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 37 37 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 38 38 H 1.09004 * 109.46908 * 180.02562 * 6 4 3 39 39 H 0.97002 * 119.99790 * 359.97438 * 9 7 4 40 40 H 1.08992 * 110.41450 * 206.00713 * 14 12 10 41 41 H 1.09010 * 110.40886 * 328.45187 * 14 12 10 42 42 H 1.09000 * 109.47464 * 309.99978 * 16 15 14 43 43 H 1.09005 * 109.47261 * 70.00343 * 16 15 14 44 44 H 0.96996 * 120.00185 * 0.02562 * 19 17 16 45 45 H 0.97002 * 119.99600 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.41454 * 158.26386 * 28 15 14 47 47 H 1.09006 * 110.41050 * 280.58381 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1694 1.3953 -0.8426 6 6 4.3183 1.3915 1.3065 7 6 4.0819 3.4029 -0.1244 8 8 3.1953 4.2266 -0.2047 9 7 5.3709 3.7961 -0.1459 10 6 5.7011 5.2183 -0.2668 11 1 4.8635 5.8768 -0.4969 12 6 7.0646 5.5776 -0.8606 13 1 7.7136 4.7854 -1.2337 14 6 7.2521 6.9926 -1.4488 15 7 7.6654 7.8273 -0.2914 16 6 7.4094 9.2504 -0.5507 17 6 8.0580 10.0818 0.5259 18 8 8.6727 9.5419 1.4215 19 7 7.9551 11.4252 0.4938 20 6 8.5457 12.1816 1.4730 21 1 9.0937 11.7008 2.2699 22 6 8.4391 13.5666 1.4402 23 7 9.0048 14.2915 2.3791 24 14 7.4907 14.3980 0.0623 25 1 6.0677 14.5463 0.4601 26 1 8.0733 15.7383 -0.2010 27 1 7.5772 13.5704 -1.1676 28 6 6.8298 7.3322 0.8326 29 6 6.7984 5.7676 0.6470 30 1 7.2494 5.1167 1.3961 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8900 34 1 1.8032 2.2372 0.8900 35 1 1.8031 2.2371 -0.8900 36 1 3.8912 1.9361 2.1485 37 1 4.0727 0.3333 1.3960 38 1 5.4014 1.5147 1.3062 39 1 6.0800 3.1373 -0.0813 40 1 8.0312 6.9873 -2.2110 41 1 6.3137 7.3585 -1.8656 42 1 7.8250 9.5236 -1.5206 43 1 6.3345 9.4319 -0.5518 44 1 7.4632 11.8570 -0.2221 45 1 8.9300 15.2584 2.3563 46 1 7.2908 7.5825 1.7881 47 1 5.8259 7.7529 0.7740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114041223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:22 Heat of formation + Delta-G solvation = -54.692930 kcal Electronic energy + Delta-G solvation = -26563.357408 eV Core-core repulsion = 22679.517351 eV Total energy + Delta-G solvation = -3883.840057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54450 -40.65610 -39.74991 -36.44998 -35.83740 -35.67429 -33.80088 -33.47263 -29.94175 -29.38802 -29.18439 -28.11436 -26.54358 -25.09691 -23.20932 -22.04796 -21.42104 -21.19399 -20.94317 -20.15952 -18.43566 -18.07622 -17.62827 -16.98149 -16.81249 -16.54345 -16.41391 -16.25739 -15.80463 -15.24845 -15.20918 -14.89141 -14.83823 -14.65902 -14.40125 -14.29553 -14.06566 -13.95394 -13.84019 -13.42283 -13.30537 -13.18072 -13.02975 -12.94544 -12.49918 -12.46485 -12.41222 -12.36759 -12.25696 -11.98763 -11.92790 -11.50129 -11.12661 -11.05752 -10.85552 -10.41592 -10.24443 -9.85231 -9.38896 -8.67659 -8.41414 -6.02207 0.61458 1.29600 1.34939 1.41782 1.43832 1.58700 1.91501 1.95964 2.22598 2.58726 2.72557 3.14573 3.22270 3.46600 3.56069 3.62427 3.73634 3.77923 3.79582 4.02243 4.14586 4.20465 4.28186 4.30817 4.33057 4.34603 4.43336 4.47942 4.50369 4.60033 4.63460 4.79307 4.85268 4.88552 4.91734 4.94858 5.09653 5.12010 5.26655 5.40705 5.52353 5.80009 5.87809 5.99958 6.40692 6.59858 6.88424 7.10746 7.39821 7.97440 8.76295 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.001667 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.339836 B =16797.281088 C =17153.801408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.275 6.275 3 C -0.063 4.063 4 C -0.084 4.084 5 H 0.128 0.872 6 C -0.144 4.144 7 C 0.526 3.474 8 O -0.579 6.579 9 N -0.682 5.682 10 C 0.111 3.889 11 H 0.115 0.885 12 C -0.148 4.148 13 H 0.146 0.854 14 C 0.060 3.940 15 N -0.508 5.508 16 C 0.043 3.957 17 C 0.452 3.548 18 O -0.607 6.607 19 N -0.593 5.593 20 C -0.328 4.328 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.230 1.230 28 C 0.065 3.935 29 C -0.169 4.169 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.420 0.580 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.060 0.940 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 -29.695 -12.778 35.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.050 6.050 3 C -0.212 4.212 4 C -0.106 4.106 5 H 0.146 0.854 6 C -0.202 4.202 7 C 0.313 3.687 8 O -0.459 6.459 9 N -0.332 5.332 10 C 0.004 3.996 11 H 0.133 0.867 12 C -0.168 4.168 13 H 0.163 0.837 14 C -0.067 4.067 15 N -0.233 5.233 16 C -0.089 4.089 17 C 0.240 3.760 18 O -0.490 6.490 19 N -0.235 5.235 20 C -0.457 4.457 21 H 0.073 0.927 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.154 1.154 28 C -0.063 4.063 29 C -0.189 4.189 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.258 0.742 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.335 -30.217 -12.036 35.545 hybrid contribution -1.490 2.148 -0.047 2.615 sum -15.825 -28.070 -12.084 34.415 Atomic orbital electron populations 1.23480 0.92030 1.07566 1.05651 1.86710 1.09941 1.10217 1.98109 1.23139 0.98184 0.94309 1.05573 1.21026 0.94833 0.91251 1.03454 0.85447 1.21868 1.01899 1.02555 0.93837 1.20961 0.82044 0.91422 0.74291 1.90714 1.48194 1.55940 1.51005 1.45143 1.07897 1.06814 1.73383 1.21600 0.92634 0.83668 1.01726 0.86692 1.23888 0.98454 0.98935 0.95485 0.83681 1.22774 1.00879 0.90039 0.93020 1.65178 1.52160 1.01262 1.04671 1.22013 0.99985 0.88746 0.98145 1.20858 0.84232 0.82299 0.88651 1.90537 1.46401 1.72233 1.39864 1.42033 1.50124 1.05900 1.25459 1.18999 1.31759 0.89669 1.05277 0.92726 1.26098 0.98375 0.96081 1.00756 1.69810 1.45163 1.06966 1.35617 0.85375 0.78745 0.78756 0.78715 1.18331 1.19935 1.15375 1.23104 0.94718 0.92640 0.95846 1.24528 1.04291 0.94880 0.95243 0.85024 0.86666 0.89947 0.89907 0.90331 0.90084 0.92756 0.89739 0.89910 0.74189 0.87565 0.92248 0.85741 0.90278 0.77547 0.91173 0.92171 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.76 113.37 1.22 0.24 16 2 S -0.28 -3.39 21.19 -56.49 -1.20 -4.59 16 3 C -0.06 -0.87 4.73 71.98 0.34 -0.53 16 4 C -0.08 -0.94 2.72 -11.54 -0.03 -0.98 16 5 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 6 C -0.14 -1.28 8.92 71.98 0.64 -0.64 16 7 C 0.53 9.11 7.15 87.66 0.63 9.74 16 8 O -0.58 -15.35 15.49 -3.02 -0.05 -15.40 16 9 N -0.68 -9.35 5.46 -442.52 -2.41 -11.76 16 10 C 0.11 2.05 5.92 44.99 0.27 2.32 16 11 H 0.12 2.66 7.40 -2.39 -0.02 2.64 16 12 C -0.15 -2.53 6.97 -9.90 -0.07 -2.60 16 13 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 14 C 0.06 1.21 6.26 86.45 0.54 1.75 16 15 N -0.51 -15.36 4.98 -879.13 -4.38 -19.74 16 16 C 0.04 1.34 5.32 85.56 0.45 1.79 16 17 C 0.45 20.84 7.63 87.66 0.67 21.51 16 18 O -0.61 -34.26 14.80 -3.09 -0.05 -34.30 16 19 N -0.59 -28.44 5.09 -306.98 -1.56 -30.00 16 20 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 21 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 22 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16 23 N -0.93 -56.94 13.96 21.66 0.30 -56.64 16 24 Si 0.96 39.23 27.74 68.60 1.90 41.13 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 28 C 0.07 1.99 5.78 87.61 0.51 2.50 16 29 C -0.17 -3.69 7.33 -8.74 -0.06 -3.76 16 30 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.27 7.95 -2.39 -0.02 1.25 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.73 7.13 -2.39 -0.02 0.71 16 38 H 0.08 0.44 7.56 -2.38 -0.02 0.42 16 39 H 0.42 3.01 8.24 -92.71 -0.76 2.25 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.07 8.00 -2.38 -0.02 1.05 16 42 H 0.12 3.14 8.08 -2.39 -0.02 3.12 16 43 H 0.08 2.11 7.77 -2.38 -0.02 2.09 16 44 H 0.39 15.42 5.76 -92.71 -0.53 14.89 16 45 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 46 H 0.06 2.33 7.24 -2.38 -0.02 2.31 16 47 H 0.04 1.30 7.75 -2.38 -0.02 1.28 16 Total: -1.00 -83.09 396.43 -1.38 -84.47 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.37 Total: 34.48 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.42 Total: 12.36 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -8.05 Total: -118.14 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.20 Total: -4.59 kcal Total: -83.09 -1.38 -84.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114041223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.775 kcal (2) G-P(sol) polarization free energy of solvation -83.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds