Wall clock time and date at job start Wed Apr 1 2020 00:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.81395 * 102.99874 * 2 1 4 4 H 1.09001 * 109.47450 * 304.99912 * 3 2 1 5 5 C 1.53003 * 109.46875 * 65.00197 * 3 2 1 6 6 C 1.53000 * 109.47264 * 184.99878 * 3 2 1 7 7 C 1.50706 * 109.46913 * 65.00051 * 6 3 2 8 8 O 1.21282 * 119.99675 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99981 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00006 * 180.02562 * 9 7 6 11 11 H 1.09007 * 115.51445 * 9.58258 * 10 9 7 12 12 C 1.57168 * 116.91632 * 223.11513 * 10 9 7 13 13 H 1.08992 * 120.63500 * 3.42226 * 12 10 9 14 14 C 1.54378 * 118.11802 * 161.40905 * 12 10 9 15 15 N 1.48560 * 104.69549 * 86.11811 * 14 12 10 16 16 C 1.46905 * 110.99577 * 200.89794 * 15 14 12 17 17 C 1.50698 * 109.47165 * 169.99909 * 16 15 14 18 18 O 1.21299 * 119.99948 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00283 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00035 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00263 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47227 * 89.99768 * 24 22 20 26 26 H 1.48497 * 109.47059 * 209.99979 * 24 22 20 27 27 H 1.48504 * 109.46819 * 329.99747 * 24 22 20 28 28 C 1.48555 * 104.22165 * 320.45136 * 15 14 12 29 29 C 1.53001 * 117.44490 * 154.99839 * 10 9 7 30 30 H 1.09000 * 119.52419 * 354.35474 * 29 10 9 31 31 H 1.09003 * 109.46950 * 60.00098 * 1 2 3 32 32 H 1.09003 * 109.46680 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47043 * 299.99785 * 1 2 3 34 34 H 1.09003 * 109.46934 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47266 * 299.99750 * 5 3 2 36 36 H 1.08994 * 109.47240 * 60.00525 * 5 3 2 37 37 H 1.09000 * 109.47235 * 305.00586 * 6 3 2 38 38 H 1.08997 * 109.47590 * 185.00163 * 6 3 2 39 39 H 0.97000 * 120.00006 * 0.02562 * 9 7 6 40 40 H 1.09002 * 110.41432 * 327.27728 * 14 12 10 41 41 H 1.09002 * 110.41130 * 204.95513 * 14 12 10 42 42 H 1.09000 * 109.47225 * 289.99666 * 16 15 14 43 43 H 1.08997 * 109.47331 * 50.00020 * 16 15 14 44 44 H 0.96997 * 119.99533 * 359.97438 * 19 17 16 45 45 H 0.96992 * 120.00274 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.41154 * 158.26271 * 28 15 14 47 47 H 1.08995 * 110.41948 * 280.70356 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7370 1.9412 -0.1257 7 6 4.1920 1.4270 -1.4673 8 8 3.3840 0.9674 -2.2462 9 7 5.4967 1.4780 -1.8013 10 6 5.9389 0.9787 -3.1057 11 1 5.1430 0.7342 -3.8093 12 6 7.2496 0.1116 -3.1285 13 1 7.7617 -0.1455 -2.2013 14 6 7.5101 -0.7809 -4.3609 15 7 8.1927 0.1101 -5.3340 16 6 8.0700 -0.4120 -6.7017 17 6 8.5523 0.6268 -7.6811 18 8 8.9589 1.6966 -7.2793 19 7 8.5321 0.3671 -9.0035 20 6 8.9714 1.3119 -9.8944 21 1 9.3342 2.2642 -9.5366 22 6 8.9510 1.0440 -11.2577 23 7 9.3717 1.9498 -12.1118 24 14 8.3243 -0.6033 -11.8765 25 1 6.8628 -0.5156 -12.1241 26 1 9.0202 -0.9546 -13.1404 27 1 8.5917 -1.6494 -10.8569 28 6 7.4876 1.4103 -5.1953 29 6 7.2346 1.5558 -3.6794 30 1 7.7348 2.3731 -3.1599 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9876 3.4637 1.3072 35 1 0.6636 2.2777 1.3970 36 1 2.2355 1.9149 2.1492 37 1 4.2340 1.3804 0.6659 38 1 3.9903 2.9976 -0.0366 39 1 6.1429 1.8453 -1.1781 40 1 6.5687 -1.1440 -4.7732 41 1 8.1554 -1.6180 -4.0944 42 1 8.6738 -1.3139 -6.8018 43 1 7.0262 -0.6488 -6.9079 44 1 8.2073 -0.4886 -9.3247 45 1 9.3571 1.7629 -13.0634 46 1 8.1167 2.2243 -5.5555 47 1 6.5427 1.3903 -5.7382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114156655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:44 Heat of formation + Delta-G solvation = -20.994151 kcal Electronic energy + Delta-G solvation = -26719.056449 eV Core-core repulsion = 22836.677681 eV Total energy + Delta-G solvation = -3882.378768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38836 -39.42559 -38.06159 -35.29062 -34.83639 -33.94847 -32.56727 -31.66515 -29.63162 -28.43854 -28.21861 -27.42654 -24.62997 -23.14460 -22.02547 -20.99640 -20.52962 -20.21488 -19.35951 -18.19753 -17.42371 -17.07253 -16.87344 -15.94330 -15.66646 -15.19415 -15.14581 -14.77932 -14.64324 -14.57034 -14.08654 -13.80284 -13.69019 -13.54263 -13.22097 -13.14193 -12.92948 -12.78240 -12.57021 -12.42368 -12.23895 -12.00105 -11.86698 -11.85613 -11.68947 -11.37723 -11.30265 -11.05328 -10.84363 -10.58705 -10.18907 -10.09435 -10.00117 -9.97677 -9.55873 -8.85363 -8.50513 -8.20530 -8.06241 -7.77651 -6.31605 -3.83062 1.37518 2.26089 2.34727 2.70591 3.03448 3.07559 3.15729 3.56828 3.71859 4.02263 4.10351 4.10718 4.23725 4.48844 4.66258 4.69105 4.71489 4.77785 4.79384 4.84347 4.89337 4.94879 5.03365 5.12987 5.16038 5.21295 5.32016 5.32825 5.43445 5.55263 5.60708 5.63086 5.70923 5.75362 5.80308 5.91504 6.07296 6.09456 6.33576 6.57614 7.06511 7.15262 7.21514 7.57554 7.98244 8.13791 8.58962 8.94292 9.41536 9.81512 10.81332 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.001844 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.246998 B =15179.681155 C =15655.925606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.239 6.239 3 C -0.046 4.046 4 H 0.095 0.905 5 C -0.148 4.148 6 C -0.123 4.123 7 C 0.511 3.489 8 O -0.512 6.512 9 N -0.701 5.701 10 C 0.107 3.893 11 H 0.135 0.865 12 C -0.174 4.174 13 H 0.118 0.882 14 C 0.059 3.941 15 N -0.487 5.487 16 C 0.031 3.969 17 C 0.451 3.549 18 O -0.563 6.563 19 N -0.588 5.588 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.063 3.937 29 C -0.160 4.160 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.401 0.599 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.371 0.629 45 H 0.273 0.727 46 H 0.123 0.877 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 -3.579 27.925 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.013 6.013 3 C -0.175 4.175 4 H 0.113 0.887 5 C -0.207 4.207 6 C -0.164 4.164 7 C 0.297 3.703 8 O -0.386 6.386 9 N -0.351 5.351 10 C 0.000 4.000 11 H 0.153 0.847 12 C -0.194 4.194 13 H 0.136 0.864 14 C -0.069 4.069 15 N -0.211 5.211 16 C -0.101 4.101 17 C 0.237 3.763 18 O -0.445 6.445 19 N -0.227 5.227 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.194 1.194 28 C -0.064 4.064 29 C -0.180 4.180 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.235 0.765 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.204 0.796 45 H 0.084 0.916 46 H 0.140 0.860 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.716 -3.953 27.471 30.958 hybrid contribution -1.688 -0.220 -0.615 1.810 sum -15.405 -4.173 26.857 31.241 Atomic orbital electron populations 1.23386 0.94827 1.06336 1.04659 1.86960 1.06765 1.09865 1.97729 1.22876 0.97571 0.95451 1.01624 0.88697 1.22110 1.01674 1.00953 0.95978 1.21521 0.94875 1.03822 0.96163 1.20499 0.82013 0.78813 0.89022 1.90779 1.52499 1.43770 1.51582 1.45276 1.08512 1.63625 1.17670 1.22487 0.91047 0.99985 0.86485 0.84722 1.24602 1.01361 0.93773 0.99697 0.86388 1.22671 0.97360 0.95675 0.91160 1.65417 1.50345 1.02086 1.03269 1.22136 1.00220 0.98568 0.89185 1.19597 0.85018 0.89008 0.82670 1.90487 1.50564 1.25935 1.77560 1.42193 1.58491 1.16392 1.05645 1.19428 1.39424 0.98145 0.86333 0.86226 1.25041 0.97558 0.97859 0.95683 1.69620 1.45917 1.33813 1.02682 0.86676 0.79725 0.83572 0.79475 1.19632 1.20139 1.19434 1.22886 0.97686 0.94868 0.90937 1.24101 0.99413 0.97175 0.97317 0.86627 0.90491 0.88260 0.90787 0.91478 0.92142 0.91166 0.87916 0.87352 0.76491 0.93631 0.89557 0.88844 0.93046 0.79644 0.91599 0.85952 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.45 101.05 1.06 0.22 16 2 S -0.24 -2.27 20.24 -107.50 -2.18 -4.45 16 3 C -0.05 -0.33 2.44 -26.73 -0.07 -0.40 16 4 H 0.09 0.80 7.95 -51.92 -0.41 0.39 16 5 C -0.15 -0.69 9.10 37.16 0.34 -0.35 16 6 C -0.12 -0.76 5.17 -27.88 -0.14 -0.91 16 7 C 0.51 5.14 7.54 -10.98 -0.08 5.06 16 8 O -0.51 -7.28 14.36 5.56 0.08 -7.20 16 9 N -0.70 -6.26 5.57 -51.62 -0.29 -6.55 16 10 C 0.11 1.23 6.18 -65.67 -0.41 0.82 16 11 H 0.14 1.85 7.40 -51.93 -0.38 1.46 16 12 C -0.17 -1.97 7.25 -86.81 -0.63 -2.60 16 13 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.06 0.76 6.31 -2.18 -0.01 0.74 16 15 N -0.49 -7.97 5.34 -231.41 -1.23 -9.20 16 16 C 0.03 0.53 5.55 -4.97 -0.03 0.50 16 17 C 0.45 10.24 7.50 -10.98 -0.08 10.16 16 18 O -0.56 -14.71 13.24 5.54 0.07 -14.64 16 19 N -0.59 -14.06 5.09 -10.96 -0.06 -14.11 16 20 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 24 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 C 0.06 1.04 5.11 -2.19 -0.01 1.03 16 29 C -0.16 -1.99 6.91 -89.07 -0.62 -2.61 16 30 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.38 7.14 -51.93 -0.37 0.01 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.27 6.92 -51.93 -0.36 -0.09 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 2.38 8.83 -40.82 -0.36 2.02 16 40 H 0.05 0.57 7.82 -51.93 -0.41 0.17 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 44 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.12 2.41 6.05 -51.93 -0.31 2.10 16 47 H 0.04 0.68 7.99 -51.93 -0.41 0.27 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -34.75 392.31 -10.01 -44.76 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.45 Total: 11.72 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.93 Total: 3.96 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.80 Total: -54.83 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.15 Total: -21.84 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.18 Total: -4.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.75 -10.01 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114156655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.765 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds