Wall clock time and date at job start Wed Apr 1 2020 00:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.81395 * 102.99874 * 2 1 4 4 H 1.09001 * 109.47450 * 304.99912 * 3 2 1 5 5 C 1.53003 * 109.46875 * 65.00197 * 3 2 1 6 6 C 1.53000 * 109.47264 * 184.99878 * 3 2 1 7 7 C 1.50706 * 109.46913 * 65.00051 * 6 3 2 8 8 O 1.21282 * 119.99675 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99981 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00006 * 180.02562 * 9 7 6 11 11 H 1.09007 * 115.51445 * 9.58258 * 10 9 7 12 12 C 1.57168 * 116.91632 * 223.11513 * 10 9 7 13 13 H 1.08992 * 120.63500 * 3.42226 * 12 10 9 14 14 C 1.54378 * 118.11802 * 161.40905 * 12 10 9 15 15 N 1.48560 * 104.69549 * 86.11811 * 14 12 10 16 16 C 1.46905 * 110.99577 * 200.89794 * 15 14 12 17 17 C 1.50698 * 109.47165 * 169.99909 * 16 15 14 18 18 O 1.21299 * 119.99948 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00283 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00035 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00263 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47227 * 89.99768 * 24 22 20 26 26 H 1.48497 * 109.47059 * 209.99979 * 24 22 20 27 27 H 1.48504 * 109.46819 * 329.99747 * 24 22 20 28 28 C 1.48555 * 104.22165 * 320.45136 * 15 14 12 29 29 C 1.53001 * 117.44490 * 154.99839 * 10 9 7 30 30 H 1.09000 * 119.52419 * 354.35474 * 29 10 9 31 31 H 1.09003 * 109.46950 * 60.00098 * 1 2 3 32 32 H 1.09003 * 109.46680 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47043 * 299.99785 * 1 2 3 34 34 H 1.09003 * 109.46934 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47266 * 299.99750 * 5 3 2 36 36 H 1.08994 * 109.47240 * 60.00525 * 5 3 2 37 37 H 1.09000 * 109.47235 * 305.00586 * 6 3 2 38 38 H 1.08997 * 109.47590 * 185.00163 * 6 3 2 39 39 H 0.97000 * 120.00006 * 0.02562 * 9 7 6 40 40 H 1.09002 * 110.41432 * 327.27728 * 14 12 10 41 41 H 1.09002 * 110.41130 * 204.95513 * 14 12 10 42 42 H 1.09000 * 109.47225 * 289.99666 * 16 15 14 43 43 H 1.08997 * 109.47331 * 50.00020 * 16 15 14 44 44 H 0.96997 * 119.99533 * 359.97438 * 19 17 16 45 45 H 0.96992 * 120.00274 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.41154 * 158.26271 * 28 15 14 47 47 H 1.08995 * 110.41948 * 280.70356 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7370 1.9412 -0.1257 7 6 4.1920 1.4270 -1.4673 8 8 3.3840 0.9674 -2.2462 9 7 5.4967 1.4780 -1.8013 10 6 5.9389 0.9787 -3.1057 11 1 5.1430 0.7342 -3.8093 12 6 7.2496 0.1116 -3.1285 13 1 7.7617 -0.1455 -2.2013 14 6 7.5101 -0.7809 -4.3609 15 7 8.1927 0.1101 -5.3340 16 6 8.0700 -0.4120 -6.7017 17 6 8.5523 0.6268 -7.6811 18 8 8.9589 1.6966 -7.2793 19 7 8.5321 0.3671 -9.0035 20 6 8.9714 1.3119 -9.8944 21 1 9.3342 2.2642 -9.5366 22 6 8.9510 1.0440 -11.2577 23 7 9.3717 1.9498 -12.1118 24 14 8.3243 -0.6033 -11.8765 25 1 6.8628 -0.5156 -12.1241 26 1 9.0202 -0.9546 -13.1404 27 1 8.5917 -1.6494 -10.8569 28 6 7.4876 1.4103 -5.1953 29 6 7.2346 1.5558 -3.6794 30 1 7.7348 2.3731 -3.1599 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9876 3.4637 1.3072 35 1 0.6636 2.2777 1.3970 36 1 2.2355 1.9149 2.1492 37 1 4.2340 1.3804 0.6659 38 1 3.9903 2.9976 -0.0366 39 1 6.1429 1.8453 -1.1781 40 1 6.5687 -1.1440 -4.7732 41 1 8.1554 -1.6180 -4.0944 42 1 8.6738 -1.3139 -6.8018 43 1 7.0262 -0.6488 -6.9079 44 1 8.2073 -0.4886 -9.3247 45 1 9.3571 1.7629 -13.0634 46 1 8.1167 2.2243 -5.5555 47 1 6.5427 1.3903 -5.7382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114156655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:44 Heat of formation + Delta-G solvation = -48.246000 kcal Electronic energy + Delta-G solvation = -26720.238178 eV Core-core repulsion = 22836.677681 eV Total energy + Delta-G solvation = -3883.560497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41601 -40.57532 -39.62569 -36.41580 -35.81003 -35.46701 -33.84154 -33.52702 -30.20941 -29.44456 -29.27501 -28.47658 -26.39006 -24.09014 -22.92443 -21.97957 -21.40026 -21.32378 -21.16960 -20.12125 -18.19842 -17.90053 -17.62273 -17.55147 -16.84476 -16.52658 -16.33587 -16.21549 -15.65099 -15.28395 -15.19188 -14.93900 -14.88859 -14.60857 -14.39727 -14.30686 -14.05074 -13.82438 -13.62014 -13.38569 -13.18728 -13.12275 -12.98525 -12.89891 -12.50964 -12.45268 -12.35220 -12.34196 -12.16782 -11.99391 -11.86262 -11.50630 -11.10925 -10.92038 -10.69648 -10.32673 -10.25101 -9.69524 -9.41823 -8.47085 -8.42892 -6.03596 0.81323 1.29114 1.33754 1.42862 1.57726 1.69633 1.91223 1.93915 2.21309 2.56028 2.75135 3.12917 3.16259 3.54867 3.60751 3.67456 3.75119 3.80199 4.05225 4.17813 4.19303 4.22309 4.30505 4.30711 4.33843 4.34998 4.48373 4.55371 4.56584 4.64005 4.64882 4.76165 4.83990 4.87996 4.97714 5.01306 5.15462 5.22336 5.27102 5.48242 5.51469 5.78635 5.86893 6.00485 6.53601 6.57196 6.86172 7.27159 7.36671 7.93111 8.74498 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.001844 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.246998 B =15179.681155 C =15655.925606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.308 6.308 3 C -0.035 4.035 4 H 0.077 0.923 5 C -0.141 4.141 6 C -0.116 4.116 7 C 0.506 3.494 8 O -0.560 6.560 9 N -0.689 5.689 10 C 0.113 3.887 11 H 0.110 0.890 12 C -0.156 4.156 13 H 0.145 0.855 14 C 0.058 3.942 15 N -0.504 5.504 16 C 0.041 3.959 17 C 0.449 3.551 18 O -0.604 6.604 19 N -0.590 5.590 20 C -0.327 4.327 21 H 0.057 0.943 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.231 1.231 28 C 0.063 3.937 29 C -0.164 4.164 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.419 0.581 40 H 0.050 0.950 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.080 0.920 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 -6.064 30.525 34.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.082 6.082 3 C -0.164 4.164 4 H 0.095 0.905 5 C -0.200 4.200 6 C -0.156 4.156 7 C 0.293 3.707 8 O -0.437 6.437 9 N -0.340 5.340 10 C 0.006 3.994 11 H 0.128 0.872 12 C -0.176 4.176 13 H 0.162 0.838 14 C -0.070 4.070 15 N -0.228 5.228 16 C -0.091 4.091 17 C 0.237 3.763 18 O -0.488 6.488 19 N -0.231 5.231 20 C -0.456 4.456 21 H 0.075 0.925 22 C -0.213 4.213 23 N -0.573 5.573 24 Si 0.783 3.217 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.155 1.155 28 C -0.064 4.064 29 C -0.184 4.184 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.760 -6.436 30.130 34.163 hybrid contribution -1.342 0.698 -1.373 2.043 sum -16.102 -5.738 28.757 33.454 Atomic orbital electron populations 1.23377 0.92256 1.06920 1.05328 1.87110 1.09901 1.13367 1.97864 1.22916 0.98148 0.92949 1.02384 0.90501 1.22071 1.01744 1.01739 0.94471 1.21614 0.94197 1.05802 0.94000 1.21234 0.81658 0.77842 0.89926 1.90765 1.53721 1.45916 1.53311 1.45171 1.08816 1.63127 1.16848 1.22166 0.90087 0.99883 0.87294 0.87207 1.24721 1.00664 0.92149 1.00052 0.83771 1.22788 0.97785 0.95734 0.90648 1.65414 1.51374 1.02638 1.03401 1.22094 1.01823 0.97063 0.88072 1.20778 0.82983 0.89528 0.83016 1.90494 1.51721 1.28238 1.78381 1.42023 1.59135 1.16378 1.05609 1.18999 1.41226 0.97455 0.87940 0.92475 1.26095 0.97040 1.03109 0.95076 1.69796 1.47259 1.36901 1.03366 0.85391 0.79246 0.77702 0.79385 1.18348 1.19851 1.15474 1.22639 0.95950 0.94125 0.93726 1.23911 1.00891 0.98864 0.94709 0.85301 0.90936 0.87784 0.88913 0.89664 0.92073 0.90521 0.85987 0.84073 0.74389 0.93137 0.87331 0.85770 0.90596 0.77542 0.91124 0.90145 0.95659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.45 113.37 1.19 -0.22 16 2 S -0.31 -5.69 20.24 -56.49 -1.14 -6.83 16 3 C -0.03 -0.45 2.44 30.60 0.07 -0.37 16 4 H 0.08 1.26 7.95 -2.39 -0.02 1.24 16 5 C -0.14 -0.94 9.10 71.98 0.66 -0.29 16 6 C -0.12 -1.14 5.17 29.85 0.15 -0.99 16 7 C 0.51 9.47 7.54 87.66 0.66 10.13 16 8 O -0.56 -15.94 14.36 -3.03 -0.04 -15.98 16 9 N -0.69 -10.89 5.57 -435.60 -2.43 -13.32 16 10 C 0.11 2.47 6.18 46.46 0.29 2.75 16 11 H 0.11 3.03 7.40 -2.38 -0.02 3.02 16 12 C -0.16 -3.12 7.25 -8.32 -0.06 -3.18 16 13 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 14 C 0.06 1.31 6.31 86.45 0.55 1.86 16 15 N -0.50 -15.88 5.34 -886.06 -4.73 -20.61 16 16 C 0.04 1.33 5.55 85.56 0.47 1.80 16 17 C 0.45 20.72 7.50 87.66 0.66 21.38 16 18 O -0.60 -33.36 13.24 -3.09 -0.04 -33.40 16 19 N -0.59 -28.37 5.09 -306.98 -1.56 -29.94 16 20 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 21 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 22 C -0.01 -0.81 5.50 84.92 0.47 -0.34 16 23 N -0.93 -56.68 13.96 21.66 0.30 -56.37 16 24 Si 0.96 39.43 27.74 68.60 1.90 41.33 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 28 C 0.06 2.14 5.11 86.45 0.44 2.58 16 29 C -0.16 -3.94 6.91 -9.79 -0.07 -4.01 16 30 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 0.80 7.14 -2.39 -0.02 0.78 16 34 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.06 0.41 6.92 -2.39 -0.02 0.40 16 36 H 0.08 0.44 8.14 -2.39 -0.02 0.43 16 37 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.42 3.66 8.83 -92.71 -0.82 2.84 16 40 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 41 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.08 2.14 7.88 -2.39 -0.02 2.12 16 44 H 0.39 15.61 5.76 -92.71 -0.53 15.07 16 45 H 0.28 15.51 8.31 -92.71 -0.77 14.73 16 46 H 0.08 3.40 6.05 -2.38 -0.01 3.38 16 47 H 0.03 0.90 7.99 -2.39 -0.02 0.88 16 Total: -1.00 -83.97 392.31 -1.83 -85.80 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.42 Total: 36.71 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.33 Total: 12.61 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -8.41 Total: -120.24 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -0.08 Total: -49.38 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.33 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.14 Total: -6.83 kcal Total: -83.97 -1.83 -85.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114156655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.551 kcal (2) G-P(sol) polarization free energy of solvation -83.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds