Wall clock time and date at job start Wed Apr 1 2020 00:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 103.00088 * 2 1 4 4 H 1.08997 * 109.47007 * 55.00083 * 3 2 1 5 5 C 1.53002 * 109.47145 * 295.00344 * 3 2 1 6 6 C 1.52993 * 109.46976 * 175.00188 * 3 2 1 7 7 C 1.50705 * 109.47050 * 294.99909 * 6 3 2 8 8 O 1.21275 * 120.00180 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99913 * 180.02562 * 7 6 3 10 10 C 1.46496 * 119.99892 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.51520 * 9.58127 * 10 9 7 12 12 C 1.57168 * 116.87974 * 223.10160 * 10 9 7 13 13 H 1.08992 * 120.63500 * 3.40615 * 12 10 9 14 14 C 1.54378 * 118.11802 * 161.39295 * 12 10 9 15 15 N 1.48560 * 104.69549 * 86.11811 * 14 12 10 16 16 C 1.46905 * 110.99577 * 200.89794 * 15 14 12 17 17 C 1.50698 * 109.47165 * 169.99909 * 16 15 14 18 18 O 1.21299 * 119.99948 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00283 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00035 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00133 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47254 * 90.00017 * 24 22 20 26 26 H 1.48500 * 109.47320 * 210.00407 * 24 22 20 27 27 H 1.48499 * 109.47163 * 330.00273 * 24 22 20 28 28 C 1.48555 * 104.22165 * 320.45136 * 15 14 12 29 29 C 1.53001 * 117.44459 * 154.99798 * 10 9 7 30 30 H 1.09000 * 119.52419 * 354.31045 * 29 10 9 31 31 H 1.09001 * 109.47047 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47505 * 59.99922 * 1 2 3 33 33 H 1.08998 * 109.47447 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46927 * 300.00093 * 5 3 2 35 35 H 1.09002 * 109.47264 * 59.99939 * 5 3 2 36 36 H 1.08994 * 109.46841 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47404 * 175.00099 * 6 3 2 38 38 H 1.08998 * 109.47699 * 55.00046 * 6 3 2 39 39 H 0.97001 * 120.00223 * 359.97438 * 9 7 6 40 40 H 1.09002 * 110.41432 * 327.27728 * 14 12 10 41 41 H 1.09002 * 110.41130 * 204.95513 * 14 12 10 42 42 H 1.09000 * 109.47225 * 289.99666 * 16 15 14 43 43 H 1.08997 * 109.47331 * 50.00020 * 16 15 14 44 44 H 0.96997 * 119.99533 * 359.97438 * 19 17 16 45 45 H 0.96992 * 119.99972 * 179.97438 * 23 22 20 46 46 H 1.09005 * 110.41154 * 158.26271 * 28 15 14 47 47 H 1.08995 * 110.41948 * 280.70356 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7369 1.9411 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3842 0.9665 2.2459 9 7 5.4965 1.4787 1.8017 10 6 5.9389 0.9783 3.1055 11 1 5.1881 0.4349 3.6792 12 6 6.9875 1.8529 3.8838 13 1 7.3162 2.8123 3.4844 14 6 7.1497 1.6161 5.4007 15 7 8.1335 0.5079 5.5060 16 6 8.0335 -0.1627 6.8092 17 6 8.8620 -1.4213 6.7914 18 8 9.4758 -1.7293 5.7915 19 7 8.9210 -2.2049 7.8864 20 6 9.6751 -3.3497 7.8703 21 1 10.2223 -3.6235 6.9803 22 6 9.7363 -4.1572 8.9994 23 7 9.0710 -3.8239 10.0825 24 14 10.7633 -5.7175 8.9773 25 1 12.1437 -5.4079 9.4284 26 1 10.1581 -6.7215 9.8888 27 1 10.8045 -6.2634 7.5969 28 6 7.7629 -0.4152 4.4025 29 6 7.3915 0.5135 3.2266 30 1 8.0200 0.4777 2.3368 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2353 1.9150 -2.1492 35 1 0.6635 2.2779 -1.3969 36 1 1.9884 3.4635 -1.3075 37 1 3.9903 2.9975 0.0366 38 1 4.2339 1.3804 -0.6659 39 1 6.1427 1.8466 1.1787 40 1 6.1979 1.3229 5.8436 41 1 7.5339 2.5130 5.8865 42 1 8.4014 0.5034 7.5897 43 1 6.9923 -0.4159 7.0087 44 1 8.4304 -1.9584 8.6861 45 1 9.1134 -4.3878 10.8705 46 1 8.6098 -1.0471 4.1350 47 1 6.9072 -1.0263 4.6892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114156656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:46 Heat of formation + Delta-G solvation = -53.282940 kcal Electronic energy + Delta-G solvation = -26681.231378 eV Core-core repulsion = 22797.452463 eV Total energy + Delta-G solvation = -3883.778915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39400 -40.52140 -39.54141 -36.39182 -35.77520 -35.46335 -33.64722 -33.22768 -30.20234 -29.41518 -29.22084 -28.42533 -26.51777 -24.14720 -22.94885 -21.98599 -21.35025 -21.31641 -20.92018 -19.85535 -18.19871 -17.89282 -17.67298 -17.51254 -16.64209 -16.53838 -16.29633 -16.23663 -15.73868 -15.44287 -15.17156 -14.98399 -14.88048 -14.60480 -14.31545 -14.10708 -13.86118 -13.64799 -13.52296 -13.28852 -13.23996 -13.09072 -12.94881 -12.87483 -12.50834 -12.43151 -12.37782 -12.34228 -12.16667 -12.12483 -11.86274 -11.49413 -11.10908 -10.91776 -10.68839 -10.23849 -10.03333 -9.69222 -9.41822 -8.48987 -8.48272 -5.97133 0.81075 1.36696 1.40443 1.53377 1.58255 1.69752 1.93555 2.01096 2.27372 2.61416 2.86498 3.18338 3.28369 3.55729 3.61401 3.68514 3.76271 3.80379 4.11639 4.18104 4.22633 4.25688 4.30092 4.30681 4.34081 4.41675 4.50760 4.55418 4.57035 4.64468 4.65421 4.76201 4.83195 4.87795 4.97620 5.01673 5.15177 5.22982 5.27921 5.39652 5.48739 5.78618 5.85929 6.05669 6.54254 6.58030 7.10541 7.27963 7.52686 8.08206 8.69198 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.001861 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.495983 B =15041.217221 C =15969.888921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.319 6.319 3 C -0.032 4.032 4 H 0.080 0.920 5 C -0.141 4.141 6 C -0.115 4.115 7 C 0.505 3.495 8 O -0.560 6.560 9 N -0.688 5.688 10 C 0.112 3.888 11 H 0.107 0.893 12 C -0.151 4.151 13 H 0.149 0.851 14 C 0.055 3.945 15 N -0.500 5.500 16 C 0.044 3.956 17 C 0.439 3.561 18 O -0.614 6.614 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.065 3.935 29 C -0.164 4.164 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.118 0.882 39 H 0.419 0.581 40 H 0.046 0.954 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.083 0.917 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.179 18.362 -21.461 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.094 6.094 3 C -0.161 4.161 4 H 0.099 0.901 5 C -0.200 4.200 6 C -0.156 4.156 7 C 0.293 3.707 8 O -0.438 6.438 9 N -0.339 5.339 10 C 0.005 3.995 11 H 0.125 0.875 12 C -0.172 4.172 13 H 0.167 0.833 14 C -0.072 4.072 15 N -0.225 5.225 16 C -0.087 4.087 17 C 0.226 3.774 18 O -0.500 6.500 19 N -0.209 5.209 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.063 4.063 29 C -0.185 4.185 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.165 0.835 38 H 0.136 0.864 39 H 0.257 0.743 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -14.163 17.041 -21.412 30.813 hybrid contribution -0.998 -0.349 0.884 1.378 sum -15.161 16.692 -20.527 30.493 Atomic orbital electron populations 1.23360 0.92013 1.06839 1.05439 1.87276 1.10203 1.14005 1.97883 1.22919 0.98153 0.92479 1.02545 0.90126 1.22072 1.01723 1.01850 0.94353 1.21618 0.94162 1.05989 0.93799 1.21261 0.81674 0.77865 0.89922 1.90767 1.53760 1.45793 1.53442 1.45161 1.08810 1.63214 1.16700 1.22148 0.90887 0.99645 0.86859 0.87523 1.24715 1.03104 0.96321 0.93016 0.83337 1.22805 0.93789 0.95592 0.94998 1.65417 1.47439 1.08472 1.01176 1.21994 0.98507 0.93954 0.94245 1.20674 0.86098 0.86822 0.83801 1.90439 1.50211 1.75479 1.33874 1.41919 1.43969 1.21453 1.13554 1.19670 1.26055 1.00361 1.00134 0.90186 1.26073 0.98692 1.02406 0.94228 1.69677 1.42422 1.40476 1.03543 0.84906 0.78111 0.76999 0.78191 1.19489 1.19568 1.19792 1.22627 0.98995 0.94335 0.90331 1.23920 0.97265 0.97176 1.00100 0.85136 0.90727 0.88785 0.88040 0.90781 0.92062 0.89311 0.83511 0.86420 0.74340 0.93567 0.87359 0.86700 0.91751 0.77034 0.91280 0.89867 0.96188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.45 113.37 1.19 -0.32 16 2 S -0.32 -6.49 20.24 -56.49 -1.14 -7.63 16 3 C -0.03 -0.42 2.44 30.59 0.07 -0.35 16 4 H 0.08 1.29 7.96 -2.39 -0.02 1.27 16 5 C -0.14 -0.96 9.10 71.98 0.66 -0.30 16 6 C -0.12 -1.18 5.17 29.85 0.15 -1.02 16 7 C 0.50 9.80 7.54 87.66 0.66 10.46 16 8 O -0.56 -16.48 14.36 -3.01 -0.04 -16.52 16 9 N -0.69 -11.35 5.57 -435.62 -2.43 -13.78 16 10 C 0.11 2.58 6.19 46.46 0.29 2.87 16 11 H 0.11 3.16 7.40 -2.39 -0.02 3.14 16 12 C -0.15 -3.15 7.25 -8.32 -0.06 -3.22 16 13 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 14 C 0.06 1.37 6.31 86.45 0.55 1.92 16 15 N -0.50 -16.97 5.34 -886.06 -4.73 -21.70 16 16 C 0.04 1.63 5.55 85.56 0.47 2.10 16 17 C 0.44 21.52 7.50 87.66 0.66 22.18 16 18 O -0.61 -34.19 13.24 -3.09 -0.04 -34.23 16 19 N -0.57 -30.17 5.29 -306.98 -1.62 -31.80 16 20 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 23 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 24 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 C 0.06 2.31 5.11 86.45 0.44 2.75 16 29 C -0.16 -4.17 6.91 -9.79 -0.07 -4.24 16 30 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 0.89 7.14 -2.39 -0.02 0.88 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.06 0.42 6.92 -2.39 -0.02 0.40 16 36 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.42 3.83 8.83 -92.71 -0.82 3.02 16 40 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 41 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 43 H 0.06 2.19 7.88 -2.39 -0.02 2.17 16 44 H 0.40 19.91 7.90 -92.71 -0.73 19.17 16 45 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.08 3.61 6.05 -2.38 -0.01 3.59 16 47 H 0.02 0.76 7.99 -2.39 -0.02 0.74 16 Total: -1.00 -77.61 395.43 -1.96 -79.57 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.56 Total: 36.55 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.29 Total: 14.09 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -8.49 Total: -117.59 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.08 Total: -50.75 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -1.14 Total: -7.63 kcal Total: -77.61 -1.96 -79.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114156656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.291 kcal (2) G-P(sol) polarization free energy of solvation -77.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds