Wall clock time and date at job start Wed Apr 1 2020 00:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46801 * 2 1 4 4 N 1.46898 * 109.47380 * 240.00187 * 2 1 3 5 5 C 1.46904 * 111.00163 * 84.99683 * 4 2 1 6 6 C 1.53952 * 113.58180 * 155.00145 * 5 4 2 7 7 C 1.52909 * 86.78355 * 139.41419 * 6 5 4 8 8 C 1.52906 * 121.13590 * 100.82048 * 7 6 5 9 9 C 1.53947 * 86.78053 * 100.82014 * 8 7 6 10 10 N 1.46500 * 113.58000 * 139.33884 * 9 8 7 11 11 C 1.34779 * 120.00169 * 154.99479 * 10 9 8 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.46881 * 180.02562 * 13 11 10 15 15 C 1.76206 * 99.99929 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99720 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00398 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99778 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47393 * 119.99621 * 19 17 15 22 22 H 1.48503 * 109.46784 * 240.00115 * 19 17 15 23 23 C 1.52901 * 121.13483 * 209.38235 * 7 6 5 24 24 C 1.52914 * 88.04315 * 335.10152 * 7 6 5 25 25 C 1.50698 * 109.47464 * 119.99790 * 2 1 3 26 26 N 1.34775 * 119.99796 * 300.00728 * 25 2 1 27 27 O 1.21279 * 119.99986 * 119.99946 * 25 2 1 28 28 H 1.09005 * 109.46801 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47679 * 299.99838 * 1 2 3 30 30 H 1.08998 * 109.47326 * 60.00455 * 1 2 3 31 31 H 1.00898 * 111.00219 * 321.04402 * 4 2 1 32 32 H 1.09000 * 112.82283 * 23.91199 * 5 4 2 33 33 H 1.09000 * 113.66174 * 24.94076 * 6 5 4 34 34 H 1.08999 * 113.74285 * 253.90227 * 6 5 4 35 35 H 1.08999 * 113.66138 * 346.34394 * 8 7 6 36 36 H 1.08995 * 113.74765 * 215.30444 * 8 7 6 37 37 H 1.09001 * 113.57904 * 270.05247 * 9 8 7 38 38 H 0.96996 * 119.99986 * 335.00076 * 10 9 8 39 39 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 40 40 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 41 41 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 42 42 H 1.09004 * 113.66496 * 144.71378 * 23 7 6 43 43 H 1.09002 * 113.66688 * 13.65390 * 23 7 6 44 44 H 1.08994 * 113.66145 * 139.37314 * 24 7 6 45 45 H 1.09000 * 113.66281 * 270.43068 * 24 7 6 46 46 H 0.96998 * 120.00232 * 359.97438 * 26 25 2 47 47 H 0.97004 * 119.99640 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 3.1045 -0.2011 -3.4175 7 6 2.0631 0.2201 -4.4549 8 6 2.1657 1.5636 -5.1778 9 6 2.7405 0.7792 -6.3712 10 7 2.2412 1.2386 -7.6696 11 6 2.9737 1.0375 -8.7829 12 8 4.0461 0.4756 -8.7099 13 6 2.4603 1.5106 -10.1184 14 16 3.6611 1.0959 -11.4077 15 6 2.8305 1.7449 -12.8196 16 1 1.8679 2.2218 -12.7080 17 6 3.4128 1.6423 -14.0754 18 7 4.5857 1.0606 -14.2115 19 14 2.5325 2.3310 -15.5722 20 1 1.2399 2.9304 -15.1538 21 1 3.3786 3.3723 -16.2085 22 1 2.2789 1.2371 -16.5440 23 6 1.9960 -0.4531 -5.8261 24 6 0.9863 -0.0290 -3.3982 25 6 2.0324 -0.7103 1.2304 26 7 1.7067 -0.2499 2.4545 27 8 2.7297 -1.6964 1.1192 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.4497 -1.4979 -1.4101 32 1 2.1701 1.2678 -2.0500 33 1 3.3172 -1.2701 -3.4202 34 1 4.0065 0.4107 -3.4296 35 1 2.8780 2.2519 -4.7228 36 1 1.2005 2.0266 -5.3826 37 1 3.8257 0.6808 -6.3463 38 1 1.3834 1.6877 -7.7281 39 1 2.3155 2.5906 -10.0902 40 1 1.5106 1.0222 -10.3364 41 1 4.9928 0.9892 -15.0890 42 1 0.9823 -0.5582 -6.2128 43 1 2.5727 -1.3760 -5.8892 44 1 0.1956 0.7212 -3.3941 45 1 0.6037 -1.0497 -3.3956 46 1 1.1492 0.5389 2.5435 47 1 2.0298 -0.7074 3.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120666017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:01 Heat of formation + Delta-G solvation = -35.888030 kcal Electronic energy + Delta-G solvation = -26195.805945 eV Core-core repulsion = 22312.781330 eV Total energy + Delta-G solvation = -3883.024615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07918 -39.96358 -38.86269 -36.82309 -34.71655 -33.94777 -32.42910 -32.34264 -29.52552 -28.69802 -26.13234 -26.04206 -25.49403 -24.97742 -23.03287 -21.18209 -20.67089 -20.33329 -18.36365 -17.92674 -17.73365 -17.17297 -16.44812 -16.18579 -15.93658 -15.85022 -15.17866 -14.94741 -14.79933 -14.63319 -14.28072 -14.22415 -13.95385 -13.40228 -13.07792 -13.03209 -12.92883 -12.84706 -12.67744 -12.52051 -12.38189 -12.07663 -11.96987 -11.55426 -11.37736 -11.06629 -11.00999 -10.86076 -10.71699 -10.39789 -10.33234 -10.11087 -10.08547 -9.78427 -9.32961 -9.06849 -8.81211 -8.76201 -8.21457 -6.48579 -6.20834 -3.91166 2.26698 2.91759 3.06939 3.10470 3.21986 3.29067 3.34055 3.71723 3.75053 4.08232 4.20842 4.21382 4.30290 4.31217 4.39218 4.49916 4.55721 4.60279 4.77582 4.91882 4.97304 5.07380 5.13882 5.14466 5.32234 5.35223 5.43002 5.43724 5.50325 5.53453 5.63869 5.71645 5.79507 5.82581 5.90552 5.97490 6.06836 6.15351 6.22225 6.31661 6.56615 6.72694 6.84778 6.96491 7.60660 7.76189 7.88742 8.36271 8.65502 9.24582 10.86677 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.049176 B = 0.001479 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.248409 B =18922.262469 C =19242.975823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.104 0.896 4 N -0.656 5.656 5 C 0.071 3.929 6 C -0.102 4.102 7 C -0.103 4.103 8 C -0.121 4.121 9 C 0.129 3.871 10 N -0.729 5.729 11 C 0.532 3.468 12 O -0.517 6.517 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.137 4.137 24 C -0.150 4.150 25 C 0.518 3.482 26 N -0.861 5.861 27 O -0.521 6.521 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.351 0.649 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.399 0.601 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 1.962 32.887 35.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.047 4.047 3 H 0.122 0.878 4 N -0.286 5.286 5 C -0.039 4.039 6 C -0.140 4.140 7 C -0.104 4.104 8 C -0.160 4.160 9 C 0.024 3.976 10 N -0.382 5.382 11 C 0.318 3.682 12 O -0.392 6.392 13 C -0.305 4.305 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.176 4.176 24 C -0.189 4.189 25 C 0.301 3.699 26 N -0.426 5.426 27 O -0.394 6.394 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.227 0.773 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.799 0.399 32.759 34.196 hybrid contribution -3.413 1.660 -0.888 3.898 sum -13.212 2.059 31.871 34.563 Atomic orbital electron populations 1.22509 0.94853 1.03202 1.03345 1.21546 0.94106 0.98694 0.90385 0.87766 1.60069 1.57339 1.08956 1.02273 1.23126 0.96590 0.96104 0.88095 1.22814 0.96481 1.02448 0.92242 1.22078 0.97951 0.97490 0.92896 1.23081 1.01651 0.95530 0.95690 1.22385 1.00014 0.94137 0.81085 1.46002 1.23429 1.62216 1.06543 1.20342 0.84438 0.78204 0.85194 1.90698 1.21522 1.40689 1.86243 1.23541 1.05920 1.04159 0.96856 1.85412 1.24309 1.77396 0.96302 1.22913 1.07954 1.44175 0.93305 0.90904 1.24988 0.95015 0.95018 0.98551 1.70024 1.15232 1.40792 1.24220 0.86122 0.79347 0.78675 0.81374 1.19639 1.20565 1.20571 1.23292 1.01325 0.98654 0.94294 1.23522 0.96830 1.01992 0.96545 1.20655 0.79800 0.84574 0.84833 1.43923 1.56501 1.34024 1.08174 1.90767 1.36363 1.25747 1.86532 0.91721 0.91575 0.91072 0.82790 0.88534 0.88988 0.90891 0.90655 0.89478 0.86797 0.76884 0.89276 0.89290 0.92237 0.89722 0.90785 0.91414 0.89638 0.77323 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 9.06 37.16 0.34 -0.20 16 2 C 0.07 0.34 2.99 -68.87 -0.21 0.13 16 3 H 0.10 0.40 7.46 -51.93 -0.39 0.02 16 4 N -0.66 -4.65 5.85 -99.92 -0.58 -5.23 16 5 C 0.07 0.44 4.00 -66.72 -0.27 0.18 16 6 C -0.10 -0.82 7.64 -26.28 -0.20 -1.02 16 7 C -0.10 -0.79 1.11 -154.72 -0.17 -0.96 16 8 C -0.12 -0.97 7.59 -26.29 -0.20 -1.17 16 9 C 0.13 1.49 4.24 -66.95 -0.28 1.21 16 10 N -0.73 -9.61 5.35 -52.86 -0.28 -9.90 16 11 C 0.53 9.95 7.85 -10.99 -0.09 9.87 16 12 O -0.52 -11.86 15.46 5.56 0.09 -11.77 16 13 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 16 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 19 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.14 -1.36 7.64 -26.29 -0.20 -1.57 16 24 C -0.15 -0.89 7.46 -26.28 -0.20 -1.08 16 25 C 0.52 3.78 7.50 -10.99 -0.08 3.69 16 26 N -0.86 -2.81 8.77 31.22 0.27 -2.54 16 27 O -0.52 -6.51 17.27 5.56 0.10 -6.41 16 28 H 0.06 0.24 8.13 -51.93 -0.42 -0.18 16 29 H 0.07 0.08 7.56 -51.93 -0.39 -0.31 16 30 H 0.07 0.20 8.06 -51.93 -0.42 -0.22 16 31 H 0.35 2.46 7.94 -39.29 -0.31 2.15 16 32 H 0.10 0.53 7.47 -51.93 -0.39 0.15 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 37 H 0.11 1.59 7.47 -51.93 -0.39 1.20 16 38 H 0.40 4.03 8.72 -40.82 -0.36 3.67 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.52 7.82 -51.93 -0.41 0.11 16 46 H 0.40 0.08 8.25 -40.82 -0.34 -0.26 16 47 H 0.40 1.14 8.93 -40.82 -0.36 0.78 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -37.93 402.79 -9.50 -47.43 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.52 Total: 2.17 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.14 Total: -6.82 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.14 Total: -43.22 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.93 -9.50 -47.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.545 kcal (2) G-P(sol) polarization free energy of solvation -37.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds