Wall clock time and date at job start Wed Apr 1 2020 00:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46801 * 2 1 4 4 N 1.46898 * 109.47380 * 240.00187 * 2 1 3 5 5 C 1.46904 * 111.00163 * 84.99683 * 4 2 1 6 6 C 1.53952 * 113.58180 * 155.00145 * 5 4 2 7 7 C 1.52909 * 86.78355 * 139.41419 * 6 5 4 8 8 C 1.52906 * 121.13590 * 100.82048 * 7 6 5 9 9 C 1.53947 * 86.78053 * 100.82014 * 8 7 6 10 10 N 1.46500 * 113.58000 * 139.33884 * 9 8 7 11 11 C 1.34779 * 120.00169 * 154.99479 * 10 9 8 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.46881 * 180.02562 * 13 11 10 15 15 C 1.76206 * 99.99929 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99720 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00398 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99778 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47393 * 119.99621 * 19 17 15 22 22 H 1.48503 * 109.46784 * 240.00115 * 19 17 15 23 23 C 1.52901 * 121.13483 * 209.38235 * 7 6 5 24 24 C 1.52914 * 88.04315 * 335.10152 * 7 6 5 25 25 C 1.50698 * 109.47464 * 119.99790 * 2 1 3 26 26 N 1.34775 * 119.99796 * 300.00728 * 25 2 1 27 27 O 1.21279 * 119.99986 * 119.99946 * 25 2 1 28 28 H 1.09005 * 109.46801 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47679 * 299.99838 * 1 2 3 30 30 H 1.08998 * 109.47326 * 60.00455 * 1 2 3 31 31 H 1.00898 * 111.00219 * 321.04402 * 4 2 1 32 32 H 1.09000 * 112.82283 * 23.91199 * 5 4 2 33 33 H 1.09000 * 113.66174 * 24.94076 * 6 5 4 34 34 H 1.08999 * 113.74285 * 253.90227 * 6 5 4 35 35 H 1.08999 * 113.66138 * 346.34394 * 8 7 6 36 36 H 1.08995 * 113.74765 * 215.30444 * 8 7 6 37 37 H 1.09001 * 113.57904 * 270.05247 * 9 8 7 38 38 H 0.96996 * 119.99986 * 335.00076 * 10 9 8 39 39 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 40 40 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 41 41 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 42 42 H 1.09004 * 113.66496 * 144.71378 * 23 7 6 43 43 H 1.09002 * 113.66688 * 13.65390 * 23 7 6 44 44 H 1.08994 * 113.66145 * 139.37314 * 24 7 6 45 45 H 1.09000 * 113.66281 * 270.43068 * 24 7 6 46 46 H 0.96998 * 120.00232 * 359.97438 * 26 25 2 47 47 H 0.97004 * 119.99640 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 3.1045 -0.2011 -3.4175 7 6 2.0631 0.2201 -4.4549 8 6 2.1657 1.5636 -5.1778 9 6 2.7405 0.7792 -6.3712 10 7 2.2412 1.2386 -7.6696 11 6 2.9737 1.0375 -8.7829 12 8 4.0461 0.4756 -8.7099 13 6 2.4603 1.5106 -10.1184 14 16 3.6611 1.0959 -11.4077 15 6 2.8305 1.7449 -12.8196 16 1 1.8679 2.2218 -12.7080 17 6 3.4128 1.6423 -14.0754 18 7 4.5857 1.0606 -14.2115 19 14 2.5325 2.3310 -15.5722 20 1 1.2399 2.9304 -15.1538 21 1 3.3786 3.3723 -16.2085 22 1 2.2789 1.2371 -16.5440 23 6 1.9960 -0.4531 -5.8261 24 6 0.9863 -0.0290 -3.3982 25 6 2.0324 -0.7103 1.2304 26 7 1.7067 -0.2499 2.4545 27 8 2.7297 -1.6964 1.1192 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.4497 -1.4979 -1.4101 32 1 2.1701 1.2678 -2.0500 33 1 3.3172 -1.2701 -3.4202 34 1 4.0065 0.4107 -3.4296 35 1 2.8780 2.2519 -4.7228 36 1 1.2005 2.0266 -5.3826 37 1 3.8257 0.6808 -6.3463 38 1 1.3834 1.6877 -7.7281 39 1 2.3155 2.5906 -10.0902 40 1 1.5106 1.0222 -10.3364 41 1 4.9928 0.9892 -15.0890 42 1 0.9823 -0.5582 -6.2128 43 1 2.5727 -1.3760 -5.8892 44 1 0.1956 0.7212 -3.3941 45 1 0.6037 -1.0497 -3.3956 46 1 1.1492 0.5389 2.5435 47 1 2.0298 -0.7074 3.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120666017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:00 Heat of formation + Delta-G solvation = -67.181539 kcal Electronic energy + Delta-G solvation = -26197.162933 eV Core-core repulsion = 22312.781330 eV Total energy + Delta-G solvation = -3884.381603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80657 -40.61943 -40.10557 -37.57882 -35.48665 -34.58949 -34.52812 -33.34971 -30.65172 -29.51933 -27.67185 -26.79312 -26.68678 -25.40415 -23.87250 -21.96065 -21.57597 -21.15415 -19.86399 -18.90688 -18.34763 -17.84917 -17.67211 -17.33412 -16.87961 -16.52033 -16.45269 -16.26370 -16.01317 -15.77167 -15.32867 -14.85694 -14.70305 -14.65095 -14.39413 -13.91350 -13.80400 -13.64173 -13.37437 -13.24896 -13.15788 -13.14503 -12.97281 -12.90986 -12.59536 -12.42194 -12.22075 -12.19439 -11.73475 -11.51759 -11.15720 -11.07519 -11.01144 -10.86627 -10.64150 -10.56547 -10.26295 -9.97477 -9.23598 -8.66709 -8.34469 -6.12786 1.28019 1.41790 1.48186 1.59124 1.62161 1.75097 2.26945 2.34814 2.53171 2.99840 3.26776 3.33007 3.45922 3.53438 3.67912 3.82528 3.92800 3.97539 4.01701 4.04797 4.16697 4.20193 4.32107 4.47122 4.48719 4.51741 4.72809 4.77927 4.79866 4.83959 4.91464 4.95160 5.00962 5.08429 5.09278 5.22507 5.27369 5.35422 5.42249 5.46707 5.64474 5.95556 6.14373 6.20288 6.40084 6.56875 6.61410 7.06865 7.29477 7.46997 8.75121 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.049176 B = 0.001479 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.248409 B =18922.262469 C =19242.975823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.123 0.877 4 N -0.678 5.678 5 C 0.083 3.917 6 C -0.115 4.115 7 C -0.094 4.094 8 C -0.101 4.101 9 C 0.111 3.889 10 N -0.701 5.701 11 C 0.532 3.468 12 O -0.570 6.570 13 C -0.129 4.129 14 S -0.156 6.156 15 C -0.545 4.545 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.137 4.137 24 C -0.134 4.134 25 C 0.512 3.488 26 N -0.841 5.841 27 O -0.584 6.584 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.349 0.651 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.417 0.583 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.579 4.439 34.253 38.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.044 4.044 3 H 0.140 0.860 4 N -0.308 5.308 5 C -0.027 4.027 6 C -0.154 4.154 7 C -0.095 4.095 8 C -0.138 4.138 9 C 0.006 3.994 10 N -0.354 5.354 11 C 0.318 3.682 12 O -0.448 6.448 13 C -0.280 4.280 14 S 0.071 5.929 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.821 3.179 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.175 4.175 24 C -0.173 4.173 25 C 0.296 3.704 26 N -0.406 5.406 27 O -0.463 6.463 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.169 0.831 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.248 0.752 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -13.583 2.938 34.207 36.923 hybrid contribution -2.259 0.868 -1.133 2.672 sum -15.842 3.806 33.075 36.870 Atomic orbital electron populations 1.22452 0.92784 1.03011 1.04880 1.21610 0.95583 0.98725 0.88457 0.85982 1.59969 1.58183 1.09476 1.03208 1.23043 0.95533 0.96538 0.87585 1.22878 0.97015 1.01317 0.94153 1.21973 0.98883 0.96703 0.91949 1.23028 1.02666 0.95399 0.92752 1.22607 0.98840 0.96751 0.81177 1.45761 1.23337 1.60646 1.05623 1.20145 0.84134 0.77932 0.85975 1.90688 1.23899 1.43359 1.86893 1.23381 1.04034 1.05634 0.94970 1.85628 1.28845 1.78443 0.99971 1.23245 1.08263 1.44164 0.93644 0.89827 1.26139 0.95737 0.95096 1.02196 1.70192 1.17189 1.42298 1.25204 0.84892 0.78462 0.77941 0.76557 1.17907 1.19928 1.19983 1.23298 1.01145 0.97106 0.95986 1.23436 0.96624 1.02646 0.94634 1.21180 0.78925 0.83873 0.86390 1.43780 1.55493 1.34082 1.07226 1.90742 1.39442 1.28599 1.87495 0.92775 0.89419 0.90124 0.83083 0.86925 0.90806 0.91757 0.89891 0.86854 0.89939 0.74537 0.87101 0.87221 0.92010 0.88572 0.92938 0.89239 0.89731 0.75200 0.76502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 9.06 71.98 0.65 0.17 16 2 C 0.07 0.56 2.99 44.17 0.13 0.69 16 3 H 0.12 0.54 7.46 -2.38 -0.02 0.53 16 4 N -0.68 -8.88 5.85 -470.04 -2.75 -11.63 16 5 C 0.08 0.86 4.00 45.55 0.18 1.04 16 6 C -0.12 -1.83 7.64 30.89 0.24 -1.59 16 7 C -0.09 -1.27 1.11 -52.32 -0.06 -1.33 16 8 C -0.10 -1.31 7.59 30.88 0.23 -1.08 16 9 C 0.11 2.49 4.24 45.62 0.19 2.68 16 10 N -0.70 -17.38 5.35 -439.53 -2.35 -19.74 16 11 C 0.53 19.88 7.85 87.66 0.69 20.57 16 12 O -0.57 -27.23 15.46 -3.04 -0.05 -27.28 16 13 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 14 S -0.16 -8.78 20.57 -56.49 -1.16 -9.94 16 15 C -0.55 -31.31 9.50 67.95 0.65 -30.66 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.74 5.49 84.86 0.47 1.21 16 18 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16 19 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 23 C -0.14 -2.62 7.64 30.88 0.24 -2.39 16 24 C -0.13 -1.18 7.46 30.89 0.23 -0.95 16 25 C 0.51 6.99 7.50 87.66 0.66 7.65 16 26 N -0.84 -4.03 8.77 -173.54 -1.52 -5.55 16 27 O -0.58 -15.01 17.27 -3.03 -0.05 -15.06 16 28 H 0.05 0.30 8.13 -2.38 -0.02 0.28 16 29 H 0.09 -0.13 7.56 -2.39 -0.02 -0.15 16 30 H 0.08 0.12 8.06 -2.39 -0.02 0.10 16 31 H 0.35 4.70 7.94 -89.70 -0.71 3.99 16 32 H 0.11 0.84 7.47 -2.39 -0.02 0.82 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.08 2.42 7.47 -2.39 -0.02 2.40 16 38 H 0.42 7.07 8.72 -92.71 -0.81 6.26 16 39 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 40 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 0.82 7.82 -2.39 -0.02 0.80 16 46 H 0.42 -1.03 8.25 -92.71 -0.76 -1.79 16 47 H 0.40 1.80 8.93 -92.71 -0.83 0.97 16 Total: -1.00 -88.28 402.79 -2.73 -91.01 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -2.09 Total: 17.37 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.93 Total: -8.66 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -6.34 Total: -93.16 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.10 Total: -42.34 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -88.28 -2.73 -91.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.828 kcal (2) G-P(sol) polarization free energy of solvation -88.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds