Wall clock time and date at job start Wed Apr 1 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46672 * 2 1 4 4 N 1.46899 * 109.47048 * 119.99480 * 2 1 3 5 5 C 1.46905 * 110.99965 * 275.00139 * 4 2 1 6 6 C 1.53948 * 113.57734 * 155.00046 * 5 4 2 7 7 C 1.52912 * 86.78092 * 139.33784 * 6 5 4 8 8 C 1.52904 * 121.13792 * 100.82195 * 7 6 5 9 9 C 1.53951 * 86.78594 * 100.81470 * 8 7 6 10 10 N 1.46500 * 113.58010 * 139.33704 * 9 8 7 11 11 C 1.34769 * 120.00241 * 155.00558 * 10 9 8 12 12 O 1.21282 * 119.99850 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00466 * 179.97438 * 11 10 9 14 14 S 1.81000 * 109.47238 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99610 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00040 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99527 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00398 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47171 * 120.00313 * 19 17 15 22 22 H 1.48508 * 109.47025 * 240.00117 * 19 17 15 23 23 C 1.52906 * 121.13377 * 209.37945 * 7 6 5 24 24 C 1.52906 * 88.03878 * 335.10029 * 7 6 5 25 25 C 1.50696 * 109.47409 * 239.99611 * 2 1 3 26 26 N 1.34786 * 119.99746 * 59.99643 * 25 2 1 27 27 O 1.21274 * 120.00124 * 240.00107 * 25 2 1 28 28 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47514 * 300.00481 * 1 2 3 30 30 H 1.09004 * 109.47240 * 60.00297 * 1 2 3 31 31 H 1.00901 * 110.99863 * 151.04799 * 4 2 1 32 32 H 1.09000 * 112.82479 * 23.91279 * 5 4 2 33 33 H 1.09003 * 113.66369 * 24.86257 * 6 5 4 34 34 H 1.09007 * 113.74971 * 253.82009 * 6 5 4 35 35 H 1.09001 * 113.65934 * 346.34449 * 8 7 6 36 36 H 1.08993 * 113.74713 * 215.30469 * 8 7 6 37 37 H 1.08996 * 113.58317 * 270.05496 * 9 8 7 38 38 H 0.97003 * 119.99532 * 334.99966 * 10 9 8 39 39 H 1.09004 * 109.46923 * 59.99646 * 13 11 10 40 40 H 1.09004 * 109.46818 * 300.00196 * 13 11 10 41 41 H 0.97006 * 120.00587 * 179.97438 * 18 17 15 42 42 H 1.09000 * 113.66402 * 144.71010 * 23 7 6 43 43 H 1.09001 * 113.66755 * 13.65829 * 23 7 6 44 44 H 1.09001 * 113.65877 * 139.38003 * 24 7 6 45 45 H 1.09006 * 113.66359 * 270.42521 * 24 7 6 46 46 H 0.96991 * 119.99783 * 0.02562 * 26 25 2 47 47 H 0.96995 * 119.99766 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2228 2.3469 6 6 1.9842 -0.4890 3.7084 7 6 3.0659 0.4766 4.1941 8 6 2.7112 1.7023 5.0365 9 6 3.1746 0.8888 6.2586 10 7 3.9443 1.6733 7.2273 11 6 3.9864 1.2943 8.5199 12 8 3.3867 0.3041 8.8814 13 6 4.7787 2.1010 9.5163 14 16 4.6389 1.3428 11.1539 15 6 5.6309 2.4564 12.0923 16 1 6.1008 3.3000 11.6084 17 6 5.8075 2.2501 13.4534 18 7 5.2344 1.2223 14.0431 19 14 6.8586 3.4311 14.4484 20 1 7.3867 4.4949 13.5571 21 1 6.0338 4.0460 15.5193 22 1 7.9915 2.6907 15.0597 23 6 4.0513 0.0728 5.2914 24 6 3.5168 0.6200 2.7401 25 6 2.0324 -0.7105 -1.2304 26 7 1.7067 -0.2501 -2.4546 27 8 2.7296 -1.6965 -1.1190 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.9173 -1.1204 1.0288 32 1 1.4051 1.0712 2.2486 33 1 2.3066 -1.5299 3.6822 34 1 1.0233 -0.3553 4.2054 35 1 1.6463 1.9347 5.0440 36 1 3.3335 2.5727 4.8288 37 1 2.3780 0.3075 6.7230 38 1 4.4237 2.4655 6.9382 39 1 4.3885 3.1181 9.5526 40 1 5.8259 2.1241 9.2144 41 1 5.3582 1.0779 14.9943 42 1 5.0513 0.4843 5.1544 43 1 4.0571 -0.9966 5.5024 44 1 3.7799 1.6407 2.4623 45 1 4.2700 -0.1092 2.4416 46 1 1.1493 0.5387 -2.5436 47 1 2.0304 -0.7071 -3.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120666019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:03 Heat of formation + Delta-G solvation = -37.790276 kcal Electronic energy + Delta-G solvation = -26189.803281 eV Core-core repulsion = 22306.696179 eV Total energy + Delta-G solvation = -3883.107102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08202 -40.15216 -38.85626 -36.71067 -34.73273 -34.06744 -32.42671 -32.34204 -29.61682 -28.73902 -26.15333 -26.03100 -25.49005 -24.95745 -22.93868 -20.99531 -20.65043 -20.32697 -18.49787 -17.99865 -17.73212 -17.30206 -16.45406 -16.27590 -16.10430 -15.58445 -15.42716 -15.15970 -14.79704 -14.72300 -14.36096 -14.07816 -13.51912 -13.44877 -13.15969 -13.05632 -12.90087 -12.76696 -12.54474 -12.43159 -12.40351 -12.16922 -11.92909 -11.44098 -11.35256 -11.06375 -11.00739 -10.88219 -10.72157 -10.42316 -10.38560 -10.26939 -10.15139 -9.78214 -9.32710 -9.06612 -8.83753 -8.77759 -8.21271 -6.48319 -6.20630 -3.90919 2.07354 2.86095 3.07310 3.10793 3.22187 3.29289 3.34384 3.65918 3.74999 4.09748 4.21362 4.22554 4.25431 4.31856 4.45526 4.53307 4.55943 4.72507 4.78578 4.90195 5.09281 5.14146 5.14703 5.26082 5.33357 5.39620 5.45585 5.50949 5.54957 5.63500 5.66252 5.72819 5.78367 5.83110 5.90951 5.98173 6.07866 6.15830 6.18250 6.23208 6.55234 6.73117 6.75430 6.97844 7.60903 7.68201 7.76648 8.36500 8.65822 9.24805 10.86858 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.046717 B = 0.001476 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.205080 B =18969.241125 C =19066.592259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.065 3.935 3 H 0.072 0.928 4 N -0.663 5.663 5 C 0.068 3.932 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.121 4.121 9 C 0.130 3.870 10 N -0.729 5.729 11 C 0.532 3.468 12 O -0.518 6.518 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.137 4.137 24 C -0.152 4.152 25 C 0.516 3.484 26 N -0.854 5.854 27 O -0.534 6.534 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.358 0.642 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.402 0.598 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 3.088 -34.184 35.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 H 0.089 0.911 4 N -0.297 5.297 5 C -0.042 4.042 6 C -0.138 4.138 7 C -0.104 4.104 8 C -0.159 4.159 9 C 0.024 3.976 10 N -0.382 5.382 11 C 0.318 3.682 12 O -0.392 6.392 13 C -0.305 4.305 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.176 4.176 24 C -0.191 4.191 25 C 0.300 3.700 26 N -0.418 5.418 27 O -0.409 6.409 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.181 0.819 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.230 0.770 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.699 0.441 -32.972 34.372 hybrid contribution 2.296 3.096 -0.576 3.897 sum -7.402 3.537 -33.548 34.537 Atomic orbital electron populations 1.21784 0.92083 1.03482 1.02237 1.21500 0.97738 0.96704 0.88926 0.91072 1.60421 1.35441 1.31472 1.02413 1.23132 0.96164 0.94649 0.90262 1.22789 0.98108 0.98889 0.94023 1.22070 0.97953 0.97469 0.92886 1.23081 1.01909 0.96360 0.94580 1.22386 0.94960 0.93355 0.86899 1.46002 1.53211 1.30731 1.08236 1.20339 0.80611 0.85052 0.82163 1.90696 1.43737 1.26177 1.78572 1.23543 1.01993 1.02993 1.01952 1.85406 1.66812 1.37372 0.93824 1.22914 1.35544 1.13976 0.95910 0.90902 1.24988 0.95917 0.95902 0.96765 1.70027 1.41631 1.27416 1.11203 0.86122 0.79616 0.80191 0.79588 1.19640 1.20567 1.20570 1.23297 0.98219 1.01263 0.94805 1.23519 0.97571 1.01877 0.96137 1.20733 0.79440 0.84394 0.85438 1.43840 1.56070 1.33867 1.08059 1.90763 1.37647 1.25932 1.86549 0.91227 0.91187 0.92206 0.81881 0.88452 0.89016 0.90855 0.90643 0.89481 0.86784 0.76874 0.89280 0.89284 0.92241 0.89711 0.90769 0.91482 0.89595 0.76963 0.76642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.30 37.16 0.35 -0.23 16 2 C 0.06 0.35 2.88 -68.87 -0.20 0.15 16 3 H 0.07 0.28 7.84 -51.93 -0.41 -0.13 16 4 N -0.66 -4.94 6.30 -99.93 -0.63 -5.57 16 5 C 0.07 0.45 3.88 -66.73 -0.26 0.19 16 6 C -0.10 -0.79 7.64 -26.28 -0.20 -1.00 16 7 C -0.10 -0.82 1.11 -154.72 -0.17 -0.99 16 8 C -0.12 -0.99 7.59 -26.28 -0.20 -1.19 16 9 C 0.13 1.51 4.24 -66.95 -0.28 1.22 16 10 N -0.73 -9.69 5.35 -52.85 -0.28 -9.98 16 11 C 0.53 9.98 7.85 -10.99 -0.09 9.90 16 12 O -0.52 -11.87 15.46 5.56 0.09 -11.78 16 13 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 19 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 C -0.14 -1.41 7.64 -26.28 -0.20 -1.61 16 24 C -0.15 -1.04 7.46 -26.29 -0.20 -1.23 16 25 C 0.52 3.54 7.45 -10.98 -0.08 3.46 16 26 N -0.85 -2.48 8.77 31.22 0.27 -2.21 16 27 O -0.53 -6.10 16.48 5.56 0.09 -6.01 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.29 7.73 -51.93 -0.40 -0.11 16 30 H 0.06 0.11 7.57 -51.93 -0.39 -0.29 16 31 H 0.36 3.15 6.91 -39.29 -0.27 2.88 16 32 H 0.10 0.55 7.48 -51.93 -0.39 0.17 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 37 H 0.11 1.58 7.46 -51.93 -0.39 1.19 16 38 H 0.40 4.09 8.73 -40.82 -0.36 3.74 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.63 7.82 -51.93 -0.41 0.23 16 46 H 0.40 -0.02 8.25 -40.82 -0.34 -0.35 16 47 H 0.40 0.94 8.93 -40.82 -0.36 0.58 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -37.18 401.45 -9.51 -46.69 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.48 Total: 3.03 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.11 Total: -7.26 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.09 Total: -43.31 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.18 Total: -17.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.18 -9.51 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.901 kcal (2) G-P(sol) polarization free energy of solvation -37.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds