Wall clock time and date at job start Wed Apr 1 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46672 * 2 1 4 4 N 1.46899 * 109.47048 * 119.99480 * 2 1 3 5 5 C 1.46905 * 110.99965 * 275.00139 * 4 2 1 6 6 C 1.53948 * 113.57734 * 155.00046 * 5 4 2 7 7 C 1.52912 * 86.78092 * 139.33784 * 6 5 4 8 8 C 1.52904 * 121.13792 * 100.82195 * 7 6 5 9 9 C 1.53951 * 86.78594 * 100.81470 * 8 7 6 10 10 N 1.46500 * 113.58010 * 139.33704 * 9 8 7 11 11 C 1.34769 * 120.00241 * 155.00558 * 10 9 8 12 12 O 1.21282 * 119.99850 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00466 * 179.97438 * 11 10 9 14 14 S 1.81000 * 109.47238 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99610 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00040 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99527 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00398 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47171 * 120.00313 * 19 17 15 22 22 H 1.48508 * 109.47025 * 240.00117 * 19 17 15 23 23 C 1.52906 * 121.13377 * 209.37945 * 7 6 5 24 24 C 1.52906 * 88.03878 * 335.10029 * 7 6 5 25 25 C 1.50696 * 109.47409 * 239.99611 * 2 1 3 26 26 N 1.34786 * 119.99746 * 59.99643 * 25 2 1 27 27 O 1.21274 * 120.00124 * 240.00107 * 25 2 1 28 28 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47514 * 300.00481 * 1 2 3 30 30 H 1.09004 * 109.47240 * 60.00297 * 1 2 3 31 31 H 1.00901 * 110.99863 * 151.04799 * 4 2 1 32 32 H 1.09000 * 112.82479 * 23.91279 * 5 4 2 33 33 H 1.09003 * 113.66369 * 24.86257 * 6 5 4 34 34 H 1.09007 * 113.74971 * 253.82009 * 6 5 4 35 35 H 1.09001 * 113.65934 * 346.34449 * 8 7 6 36 36 H 1.08993 * 113.74713 * 215.30469 * 8 7 6 37 37 H 1.08996 * 113.58317 * 270.05496 * 9 8 7 38 38 H 0.97003 * 119.99532 * 334.99966 * 10 9 8 39 39 H 1.09004 * 109.46923 * 59.99646 * 13 11 10 40 40 H 1.09004 * 109.46818 * 300.00196 * 13 11 10 41 41 H 0.97006 * 120.00587 * 179.97438 * 18 17 15 42 42 H 1.09000 * 113.66402 * 144.71010 * 23 7 6 43 43 H 1.09001 * 113.66755 * 13.65829 * 23 7 6 44 44 H 1.09001 * 113.65877 * 139.38003 * 24 7 6 45 45 H 1.09006 * 113.66359 * 270.42521 * 24 7 6 46 46 H 0.96991 * 119.99783 * 0.02562 * 26 25 2 47 47 H 0.96995 * 119.99766 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2228 2.3469 6 6 1.9842 -0.4890 3.7084 7 6 3.0659 0.4766 4.1941 8 6 2.7112 1.7023 5.0365 9 6 3.1746 0.8888 6.2586 10 7 3.9443 1.6733 7.2273 11 6 3.9864 1.2943 8.5199 12 8 3.3867 0.3041 8.8814 13 6 4.7787 2.1010 9.5163 14 16 4.6389 1.3428 11.1539 15 6 5.6309 2.4564 12.0923 16 1 6.1008 3.3000 11.6084 17 6 5.8075 2.2501 13.4534 18 7 5.2344 1.2223 14.0431 19 14 6.8586 3.4311 14.4484 20 1 7.3867 4.4949 13.5571 21 1 6.0338 4.0460 15.5193 22 1 7.9915 2.6907 15.0597 23 6 4.0513 0.0728 5.2914 24 6 3.5168 0.6200 2.7401 25 6 2.0324 -0.7105 -1.2304 26 7 1.7067 -0.2501 -2.4546 27 8 2.7296 -1.6965 -1.1190 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.9173 -1.1204 1.0288 32 1 1.4051 1.0712 2.2486 33 1 2.3066 -1.5299 3.6822 34 1 1.0233 -0.3553 4.2054 35 1 1.6463 1.9347 5.0440 36 1 3.3335 2.5727 4.8288 37 1 2.3780 0.3075 6.7230 38 1 4.4237 2.4655 6.9382 39 1 4.3885 3.1181 9.5526 40 1 5.8259 2.1241 9.2144 41 1 5.3582 1.0779 14.9943 42 1 5.0513 0.4843 5.1544 43 1 4.0571 -0.9966 5.5024 44 1 3.7799 1.6407 2.4623 45 1 4.2700 -0.1092 2.4416 46 1 1.1493 0.5387 -2.5436 47 1 2.0304 -0.7071 -3.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120666019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:02 Heat of formation + Delta-G solvation = -68.315665 kcal Electronic energy + Delta-G solvation = -26191.126961 eV Core-core repulsion = 22306.696179 eV Total energy + Delta-G solvation = -3884.430783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82278 -40.77055 -40.13591 -37.49237 -35.45342 -34.66691 -34.58075 -33.35845 -30.68505 -29.67930 -27.67333 -26.81410 -26.72395 -25.43694 -23.80492 -21.87804 -21.50236 -21.07915 -19.87277 -19.01744 -18.45567 -17.85702 -17.78145 -17.36089 -16.88054 -16.66346 -16.43765 -16.12204 -16.10627 -15.95661 -15.61188 -14.89273 -14.72173 -14.55461 -14.15983 -13.94353 -13.87121 -13.66297 -13.42263 -13.17822 -13.15916 -13.04331 -12.93092 -12.90093 -12.63604 -12.57874 -12.19942 -12.05852 -11.73980 -11.55729 -11.15774 -11.09378 -11.00807 -10.93399 -10.71405 -10.67573 -10.26544 -9.98055 -9.32420 -8.66664 -8.34573 -6.12810 1.27919 1.41635 1.48006 1.58803 1.59046 1.61991 2.26812 2.34579 2.49322 2.99704 3.15724 3.32751 3.44406 3.51269 3.65722 3.81651 3.88307 3.94504 3.99872 4.02865 4.16273 4.31816 4.32203 4.39753 4.48127 4.51543 4.74550 4.78164 4.80024 4.88966 4.91526 4.94369 4.99340 5.07172 5.08324 5.25565 5.33688 5.34215 5.42160 5.46230 5.63830 5.85861 6.11833 6.20177 6.33047 6.49296 6.56380 7.06776 7.28963 7.31677 8.74985 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.046717 B = 0.001476 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.205080 B =18969.241125 C =19066.592259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.096 0.904 4 N -0.679 5.679 5 C 0.079 3.921 6 C -0.109 4.109 7 C -0.094 4.094 8 C -0.100 4.100 9 C 0.113 3.887 10 N -0.701 5.701 11 C 0.533 3.467 12 O -0.569 6.569 13 C -0.129 4.129 14 S -0.155 6.155 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.138 4.138 24 C -0.143 4.143 25 C 0.511 3.489 26 N -0.834 5.834 27 O -0.589 6.589 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.348 0.652 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.419 0.581 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 6.575 -36.575 38.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.047 4.047 3 H 0.114 0.886 4 N -0.313 5.313 5 C -0.031 4.031 6 C -0.147 4.147 7 C -0.095 4.095 8 C -0.138 4.138 9 C 0.008 3.992 10 N -0.354 5.354 11 C 0.319 3.681 12 O -0.447 6.447 13 C -0.281 4.281 14 S 0.072 5.928 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.549 5.549 19 Si 0.821 3.179 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.177 4.177 24 C -0.182 4.182 25 C 0.296 3.704 26 N -0.398 5.398 27 O -0.468 6.468 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.170 0.830 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.254 0.746 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.251 0.749 47 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -9.397 4.001 -35.459 36.900 hybrid contribution 2.136 1.978 0.003 2.911 sum -7.261 5.979 -35.455 36.682 Atomic orbital electron populations 1.21797 0.91015 1.02604 1.03850 1.21608 0.98364 0.97299 0.87422 0.88648 1.60401 1.34955 1.32326 1.03604 1.23085 0.96354 0.94519 0.89097 1.22824 0.98022 0.98270 0.95624 1.21978 0.97132 0.97238 0.93135 1.23023 1.02993 0.96518 0.91250 1.22599 0.94739 0.94600 0.87241 1.45767 1.52289 1.30950 1.06412 1.20131 0.80108 0.84274 0.83628 1.90686 1.46020 1.28345 1.79696 1.23385 1.03730 1.03321 0.97628 1.85611 1.67555 1.39932 0.99665 1.23245 1.35523 1.14073 0.96519 0.89862 1.26135 0.97196 0.97759 0.98058 1.70193 1.43341 1.29621 1.11695 0.84895 0.77478 0.77759 0.77736 1.17957 1.19886 1.19990 1.23309 0.99061 0.99894 0.95461 1.23454 0.97527 1.02662 0.94536 1.21066 0.78782 0.83784 0.86778 1.43696 1.55067 1.33922 1.07099 1.90742 1.40332 1.28411 1.87361 0.93334 0.90790 0.89398 0.82994 0.86539 0.90728 0.91002 0.89511 0.87110 0.89596 0.74587 0.87100 0.87300 0.92001 0.88882 0.92811 0.89694 0.90411 0.74937 0.76142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 9.30 71.98 0.67 -0.13 16 2 C 0.07 0.58 2.88 44.17 0.13 0.70 16 3 H 0.10 0.40 7.84 -2.39 -0.02 0.38 16 4 N -0.68 -9.47 6.30 -470.07 -2.96 -12.44 16 5 C 0.08 0.88 3.88 45.55 0.18 1.06 16 6 C -0.11 -1.68 7.64 30.89 0.24 -1.44 16 7 C -0.09 -1.34 1.11 -52.32 -0.06 -1.39 16 8 C -0.10 -1.33 7.59 30.88 0.23 -1.10 16 9 C 0.11 2.54 4.24 45.63 0.19 2.73 16 10 N -0.70 -17.55 5.35 -439.52 -2.35 -19.91 16 11 C 0.53 19.93 7.85 87.66 0.69 20.61 16 12 O -0.57 -27.09 15.46 -3.04 -0.05 -27.14 16 13 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 14 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 15 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.75 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 19 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.14 -2.76 7.64 30.88 0.24 -2.52 16 24 C -0.14 -1.60 7.46 30.88 0.23 -1.37 16 25 C 0.51 6.43 7.45 87.65 0.65 7.08 16 26 N -0.83 -3.16 8.77 -173.53 -1.52 -4.68 16 27 O -0.59 -13.66 16.48 -3.01 -0.05 -13.71 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.41 7.73 -2.39 -0.02 0.39 16 30 H 0.09 0.01 7.57 -2.38 -0.02 -0.01 16 31 H 0.35 6.14 6.91 -89.69 -0.62 5.52 16 32 H 0.12 0.89 7.48 -2.39 -0.02 0.87 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.03 8.11 -2.39 -0.02 1.01 16 37 H 0.09 2.47 7.46 -2.39 -0.02 2.45 16 38 H 0.42 7.25 8.73 -92.71 -0.81 6.44 16 39 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 40 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 41 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 1.05 7.82 -2.38 -0.02 1.03 16 46 H 0.42 -1.32 8.25 -92.72 -0.76 -2.08 16 47 H 0.41 1.26 8.93 -92.71 -0.83 0.43 16 Total: -1.00 -85.91 401.45 -2.84 -88.75 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -2.00 Total: 19.42 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.94 Total: -10.01 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -6.55 Total: -93.24 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.10 Total: -40.84 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -85.91 -2.84 -88.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.437 kcal (2) G-P(sol) polarization free energy of solvation -85.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds