Wall clock time and date at job start Wed Apr 1 2020 00:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46954 * 2 1 4 4 C 1.50695 * 109.47105 * 120.00250 * 2 1 3 5 5 H 1.07999 * 120.00100 * 119.99664 * 4 2 1 6 6 C 1.37876 * 119.99921 * 299.99994 * 4 2 1 7 7 N 1.31514 * 120.00191 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99807 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47420 * 90.00094 * 8 6 4 10 10 H 1.48512 * 109.47078 * 210.00155 * 8 6 4 11 11 H 1.48503 * 109.47117 * 329.99825 * 8 6 4 12 12 N 1.46900 * 109.46993 * 240.00126 * 2 1 3 13 13 C 1.46896 * 110.99996 * 183.95190 * 12 2 1 14 14 C 1.38409 * 110.99875 * 59.99950 * 12 2 1 15 15 N 1.31368 * 126.35292 * 0.02562 * 14 12 2 16 16 N 1.28509 * 110.14091 * 179.97438 * 15 14 12 17 17 C 1.31478 * 109.91551 * 359.97438 * 16 15 14 18 18 C 1.47229 * 126.50003 * 179.97438 * 17 16 15 19 19 C 1.35895 * 125.27529 * 345.02150 * 18 17 16 20 20 C 1.46090 * 106.93924 * 180.02562 * 19 18 17 21 21 C 1.40733 * 106.39355 * 0.02562 * 20 19 18 22 22 C 1.39133 * 119.43622 * 180.02562 * 21 20 19 23 23 C 1.37816 * 120.06459 * 359.70484 * 22 21 20 24 24 C 1.38745 * 120.75482 * 0.55393 * 23 22 21 25 25 C 1.38143 * 120.31709 * 359.46390 * 24 23 22 26 26 O 1.35862 * 120.22458 * 180.23431 * 25 24 23 27 27 N 1.37804 * 107.46212 * 359.97438 * 21 20 19 28 28 H 0.97003 * 125.12032 * 180.02562 * 27 21 20 29 29 N 1.36540 * 126.34924 * 180.28968 * 14 12 2 30 30 C 1.46492 * 127.17958 * 0.02562 * 29 14 12 31 31 H 1.09000 * 109.47071 * 299.99870 * 1 2 3 32 32 H 1.08998 * 109.46689 * 59.99819 * 1 2 3 33 33 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99855 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47252 * 296.04954 * 13 12 2 36 36 H 1.09007 * 109.46830 * 56.04713 * 13 12 2 37 37 H 1.09002 * 109.47399 * 176.04767 * 13 12 2 38 38 H 1.07999 * 126.53148 * 0.04423 * 19 18 17 39 39 H 1.07994 * 119.96477 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.62243 * 180.27296 * 23 22 21 41 41 H 1.08002 * 119.84574 * 179.74632 * 24 23 22 42 42 H 0.96702 * 114.00343 * 89.99942 * 26 25 24 43 43 H 1.08999 * 109.47126 * 270.17465 * 30 29 14 44 44 H 1.09003 * 109.47382 * 30.17180 * 30 29 14 45 45 H 1.09000 * 109.47368 * 150.17169 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3444 -0.9492 5.1123 11 1 2.4881 -2.5655 3.7120 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5759 -0.0648 -2.3504 15 7 0.8186 1.0070 -2.4104 16 7 0.5955 1.3232 -3.6358 17 6 1.1985 0.4710 -4.4351 18 6 1.1844 0.4908 -5.9072 19 6 0.3239 1.2104 -6.6743 20 6 0.6637 0.9347 -8.0681 21 6 1.7450 0.0344 -8.0428 22 6 2.2906 -0.4129 -9.2420 23 6 1.7691 0.0202 -10.4419 24 6 0.7065 0.9118 -10.4731 25 6 0.1470 1.3713 -9.2966 26 8 -0.8965 2.2408 -9.3293 27 7 2.0416 -0.2186 -6.7210 28 1 2.7473 -0.8071 -6.4102 29 7 1.8398 -0.4477 -3.6342 30 6 2.6412 -1.5943 -4.0690 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.7088 1.1611 3.4845 35 1 3.9192 0.2044 -1.2300 36 1 3.8070 -1.2915 -0.2719 37 1 3.8164 -1.3721 -2.0501 38 1 -0.4613 1.8622 -6.3208 39 1 3.1208 -1.1036 -9.2325 40 1 2.1953 -0.3350 -11.3685 41 1 0.3119 1.2448 -11.4217 42 1 -1.7640 1.8137 -9.3426 43 1 3.6823 -1.2900 -4.1766 44 1 2.5700 -2.3897 -3.3271 45 1 2.2677 -1.9564 -5.0268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121364523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:25 Heat of formation + Delta-G solvation = 126.515803 kcal Electronic energy + Delta-G solvation = -29093.724233 eV Core-core repulsion = 25114.590776 eV Total energy + Delta-G solvation = -3979.133456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64726 -41.37760 -38.41831 -37.29780 -36.13540 -34.90152 -32.91886 -31.70896 -30.63761 -29.37805 -29.17005 -28.25746 -27.51275 -25.54599 -24.43316 -23.62758 -22.33617 -22.05862 -21.28694 -20.48586 -19.52439 -18.90438 -17.41369 -16.80886 -16.58360 -16.16598 -16.02147 -15.76604 -15.35455 -14.95566 -14.92149 -14.62147 -14.33054 -14.11413 -13.88621 -13.44023 -13.27394 -13.16930 -12.96264 -12.52478 -12.48491 -11.98332 -11.81647 -11.56777 -11.38588 -11.07891 -10.97560 -10.89462 -10.68397 -10.62871 -10.29901 -10.12803 -10.08513 -9.97601 -9.72244 -9.57579 -8.88083 -8.58379 -8.39956 -7.94710 -7.30875 -6.10656 -4.19544 0.58547 1.25672 1.72409 2.33261 2.56849 2.70241 3.23487 3.30886 3.32914 3.37144 3.46607 3.99155 4.16321 4.22127 4.42319 4.45464 4.53129 4.81317 4.81766 4.85969 5.03245 5.11546 5.15015 5.20669 5.29351 5.43894 5.51758 5.64658 5.78354 5.83520 5.86273 6.10006 6.14573 6.20340 6.31428 6.38296 6.48484 6.61740 6.72118 6.92757 7.03182 7.13141 7.26570 7.35624 7.49974 7.55808 7.65970 7.88717 8.21572 8.32689 8.80723 9.12134 9.45339 10.95298 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.002300 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.180157 B =12172.969089 C =12943.936513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.229 3.771 3 H 0.024 0.976 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.881 5.881 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.452 5.452 13 C 0.032 3.968 14 C 0.402 3.598 15 N -0.306 5.306 16 N -0.243 5.243 17 C 0.188 3.812 18 C 0.162 3.838 19 C -0.131 4.131 20 C -0.133 4.133 21 C 0.124 3.876 22 C -0.142 4.142 23 C -0.080 4.080 24 C -0.177 4.177 25 C 0.160 3.840 26 O -0.494 6.494 27 N -0.596 5.596 28 H 0.413 0.587 29 N -0.495 5.495 30 C 0.073 3.927 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.391 0.609 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -5.471 -24.353 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.126 3.874 3 H 0.041 0.959 4 C -0.560 4.560 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.518 5.518 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.176 5.176 13 C -0.115 4.115 14 C 0.048 3.952 15 N -0.152 5.152 16 N -0.084 5.084 17 C -0.075 4.075 18 C 0.054 3.946 19 C -0.159 4.159 20 C -0.138 4.138 21 C 0.016 3.984 22 C -0.163 4.163 23 C -0.100 4.100 24 C -0.197 4.197 25 C 0.114 3.886 26 O -0.305 6.305 27 N -0.203 5.203 28 H 0.252 0.748 29 N -0.193 5.193 30 C -0.071 4.071 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.248 0.752 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.912 -4.327 -23.529 24.100 hybrid contribution 1.399 -1.711 0.702 2.319 sum 4.312 -6.038 -22.827 24.002 Atomic orbital electron populations 1.21997 0.96361 0.99389 1.02553 1.19436 0.93729 0.92453 0.81795 0.95875 1.21026 1.32530 1.12928 0.89496 0.91721 1.24902 0.94908 0.95015 0.98994 1.69922 1.35614 1.22455 1.23808 0.86462 0.78527 0.79864 0.82323 1.20645 1.21052 1.19857 1.59047 1.10760 1.48072 0.99696 1.22466 0.84994 1.00763 1.03322 1.23323 0.97314 0.90703 0.83843 1.74968 1.19764 1.10505 1.09974 1.74429 1.17533 1.20143 0.96337 1.21335 1.03003 0.93081 0.90097 1.16835 0.94657 0.98604 0.84469 1.21683 1.01964 1.03336 0.88926 1.19372 0.99635 1.01415 0.93395 1.18021 0.97158 0.98992 0.84260 1.20019 1.02534 1.04369 0.89332 1.20650 0.95767 0.96667 0.96899 1.21115 1.00328 1.00815 0.97453 1.17872 0.90468 0.90152 0.90065 1.84781 1.16183 1.33223 1.96297 1.41973 1.31748 1.42655 1.03895 0.74821 1.46153 1.42524 1.24461 1.06187 1.22140 0.94902 0.87886 1.02132 0.89294 0.93595 0.95711 0.92606 0.94941 0.88005 0.93195 0.82178 0.85943 0.85210 0.85284 0.75191 0.90425 0.87812 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.77 37.16 0.33 -3.40 16 2 C 0.23 5.77 1.73 -68.86 -0.12 5.66 16 3 H 0.02 0.66 8.11 -51.93 -0.42 0.24 16 4 C -0.52 -13.61 7.88 -34.44 -0.27 -13.88 16 5 H 0.06 1.62 6.41 -52.49 -0.34 1.28 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 12 N -0.45 -9.49 4.68 -176.07 -0.82 -10.32 16 13 C 0.03 0.55 9.09 60.06 0.55 1.09 16 14 C 0.40 8.16 6.75 -318.81 -2.15 6.01 16 15 N -0.31 -6.93 8.97 30.32 0.27 -6.66 16 16 N -0.24 -4.99 12.21 32.51 0.40 -4.59 16 17 C 0.19 3.18 7.88 -153.71 -1.21 1.97 16 18 C 0.16 2.25 6.85 -82.35 -0.56 1.69 16 19 C -0.13 -1.80 10.98 -37.28 -0.41 -2.20 16 20 C -0.13 -1.62 6.30 -105.06 -0.66 -2.28 16 21 C 0.12 1.34 7.26 -83.91 -0.61 0.73 16 22 C -0.14 -1.19 10.06 -39.40 -0.40 -1.58 16 23 C -0.08 -0.61 10.01 -39.55 -0.40 -1.01 16 24 C -0.18 -1.54 9.97 -39.43 -0.39 -1.93 16 25 C 0.16 1.71 6.74 -38.87 -0.26 1.44 16 26 O -0.49 -4.83 13.51 -19.31 -0.26 -5.09 16 27 N -0.60 -6.36 5.65 -7.35 -0.04 -6.41 16 28 H 0.41 3.30 6.60 -40.82 -0.27 3.03 16 29 N -0.50 -7.90 3.24 -122.17 -0.40 -8.30 16 30 C 0.07 0.74 8.43 59.84 0.50 1.25 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.05 1.16 5.42 -51.93 -0.28 0.88 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.81 6.10 -51.92 -0.32 1.50 16 37 H 0.05 0.66 5.42 -51.93 -0.28 0.38 16 38 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.39 1.97 9.06 45.56 0.41 2.38 16 43 H 0.08 0.61 7.84 -51.93 -0.41 0.20 16 44 H 0.10 1.06 7.60 -51.93 -0.39 0.66 16 45 H 0.08 0.62 6.36 -51.93 -0.33 0.29 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -33.76 366.22 -10.50 -44.26 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.61 Total: 5.06 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -6.16 Total: -4.80 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.04 Total: -60.41 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.26 Total: -5.09 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.76 -10.50 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121364523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.778 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds