Wall clock time and date at job start Wed Apr 1 2020 00:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46954 * 2 1 4 4 C 1.50695 * 109.47105 * 120.00250 * 2 1 3 5 5 H 1.07999 * 120.00100 * 119.99664 * 4 2 1 6 6 C 1.37876 * 119.99921 * 299.99994 * 4 2 1 7 7 N 1.31514 * 120.00191 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99807 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47420 * 90.00094 * 8 6 4 10 10 H 1.48512 * 109.47078 * 210.00155 * 8 6 4 11 11 H 1.48503 * 109.47117 * 329.99825 * 8 6 4 12 12 N 1.46900 * 109.46993 * 240.00126 * 2 1 3 13 13 C 1.46896 * 110.99996 * 183.95190 * 12 2 1 14 14 C 1.38409 * 110.99875 * 59.99950 * 12 2 1 15 15 N 1.31368 * 126.35292 * 0.02562 * 14 12 2 16 16 N 1.28509 * 110.14091 * 179.97438 * 15 14 12 17 17 C 1.31478 * 109.91551 * 359.97438 * 16 15 14 18 18 C 1.47229 * 126.50003 * 179.97438 * 17 16 15 19 19 C 1.35895 * 125.27529 * 345.02150 * 18 17 16 20 20 C 1.46090 * 106.93924 * 180.02562 * 19 18 17 21 21 C 1.40733 * 106.39355 * 0.02562 * 20 19 18 22 22 C 1.39133 * 119.43622 * 180.02562 * 21 20 19 23 23 C 1.37816 * 120.06459 * 359.70484 * 22 21 20 24 24 C 1.38745 * 120.75482 * 0.55393 * 23 22 21 25 25 C 1.38143 * 120.31709 * 359.46390 * 24 23 22 26 26 O 1.35862 * 120.22458 * 180.23431 * 25 24 23 27 27 N 1.37804 * 107.46212 * 359.97438 * 21 20 19 28 28 H 0.97003 * 125.12032 * 180.02562 * 27 21 20 29 29 N 1.36540 * 126.34924 * 180.28968 * 14 12 2 30 30 C 1.46492 * 127.17958 * 0.02562 * 29 14 12 31 31 H 1.09000 * 109.47071 * 299.99870 * 1 2 3 32 32 H 1.08998 * 109.46689 * 59.99819 * 1 2 3 33 33 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99855 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47252 * 296.04954 * 13 12 2 36 36 H 1.09007 * 109.46830 * 56.04713 * 13 12 2 37 37 H 1.09002 * 109.47399 * 176.04767 * 13 12 2 38 38 H 1.07999 * 126.53148 * 0.04423 * 19 18 17 39 39 H 1.07994 * 119.96477 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.62243 * 180.27296 * 23 22 21 41 41 H 1.08002 * 119.84574 * 179.74632 * 24 23 22 42 42 H 0.96702 * 114.00343 * 89.99942 * 26 25 24 43 43 H 1.08999 * 109.47126 * 270.17465 * 30 29 14 44 44 H 1.09003 * 109.47382 * 30.17180 * 30 29 14 45 45 H 1.09000 * 109.47368 * 150.17169 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3444 -0.9492 5.1123 11 1 2.4881 -2.5655 3.7120 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5759 -0.0648 -2.3504 15 7 0.8186 1.0070 -2.4104 16 7 0.5955 1.3232 -3.6358 17 6 1.1985 0.4710 -4.4351 18 6 1.1844 0.4908 -5.9072 19 6 0.3239 1.2104 -6.6743 20 6 0.6637 0.9347 -8.0681 21 6 1.7450 0.0344 -8.0428 22 6 2.2906 -0.4129 -9.2420 23 6 1.7691 0.0202 -10.4419 24 6 0.7065 0.9118 -10.4731 25 6 0.1470 1.3713 -9.2966 26 8 -0.8965 2.2408 -9.3293 27 7 2.0416 -0.2186 -6.7210 28 1 2.7473 -0.8071 -6.4102 29 7 1.8398 -0.4477 -3.6342 30 6 2.6412 -1.5943 -4.0690 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.7088 1.1611 3.4845 35 1 3.9192 0.2044 -1.2300 36 1 3.8070 -1.2915 -0.2719 37 1 3.8164 -1.3721 -2.0501 38 1 -0.4613 1.8622 -6.3208 39 1 3.1208 -1.1036 -9.2325 40 1 2.1953 -0.3350 -11.3685 41 1 0.3119 1.2448 -11.4217 42 1 -1.7640 1.8137 -9.3426 43 1 3.6823 -1.2900 -4.1766 44 1 2.5700 -2.3897 -3.3271 45 1 2.2677 -1.9564 -5.0268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121364523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:24 Heat of formation + Delta-G solvation = 104.496610 kcal Electronic energy + Delta-G solvation = -29094.679056 eV Core-core repulsion = 25114.590776 eV Total energy + Delta-G solvation = -3980.088280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.04300 -42.24344 -39.23545 -38.91109 -36.88425 -36.18567 -34.82662 -32.67123 -31.79643 -31.20823 -30.05086 -29.38835 -28.51453 -27.34894 -26.08224 -24.73131 -23.64549 -23.10452 -22.34032 -21.70665 -20.98348 -19.73432 -18.63410 -18.34689 -17.70277 -17.46598 -17.12364 -17.07470 -16.50462 -16.33202 -15.85875 -15.74443 -15.62307 -15.11686 -15.07402 -14.69741 -14.61567 -14.28480 -14.01738 -13.92743 -13.60019 -13.19116 -13.04632 -12.87901 -12.79467 -12.57942 -12.34071 -12.32477 -12.22838 -12.13098 -12.06461 -11.65049 -11.61081 -11.30296 -11.16307 -10.84960 -10.58509 -10.49490 -9.56119 -8.99207 -8.53945 -8.14182 -6.30472 -0.31395 0.49713 0.66381 1.05896 1.40599 1.44635 1.46138 1.56576 1.67603 2.08257 2.39699 2.76268 2.85456 3.12285 3.16628 3.34059 3.48172 3.79880 3.94365 4.08304 4.10280 4.12390 4.16589 4.21661 4.31481 4.43122 4.46656 4.55587 4.68953 4.80499 4.86572 4.88175 4.90721 4.97984 5.09685 5.22071 5.34499 5.41142 5.48063 5.51335 5.56359 5.59139 5.62775 5.82595 5.90724 5.97000 6.13430 6.37665 6.47558 6.78822 6.91672 7.38516 7.65326 8.92451 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.002300 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.180157 B =12172.969089 C =12943.936513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.241 3.759 3 H -0.022 1.022 4 C -0.529 4.529 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.261 1.261 12 N -0.452 5.452 13 C 0.031 3.969 14 C 0.384 3.616 15 N -0.355 5.355 16 N -0.293 5.293 17 C 0.217 3.783 18 C 0.140 3.860 19 C -0.136 4.136 20 C -0.163 4.163 21 C 0.123 3.877 22 C -0.142 4.142 23 C -0.068 4.068 24 C -0.176 4.176 25 C 0.144 3.856 26 O -0.510 6.510 27 N -0.581 5.581 28 H 0.427 0.573 29 N -0.483 5.483 30 C 0.057 3.943 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.019 0.981 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.409 0.591 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -8.296 -27.664 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.136 3.864 3 H -0.004 1.004 4 C -0.567 4.567 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.176 5.176 13 C -0.115 4.115 14 C 0.027 3.973 15 N -0.201 5.201 16 N -0.133 5.133 17 C -0.048 4.048 18 C 0.031 3.969 19 C -0.165 4.165 20 C -0.168 4.168 21 C 0.014 3.986 22 C -0.162 4.162 23 C -0.087 4.087 24 C -0.195 4.195 25 C 0.099 3.901 26 O -0.323 6.323 27 N -0.189 5.189 28 H 0.268 0.732 29 N -0.180 5.180 30 C -0.084 4.084 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.167 0.833 42 H 0.268 0.732 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.305 -7.195 -26.878 28.326 hybrid contribution 0.639 -0.794 1.355 1.695 sum 5.943 -7.989 -25.523 27.396 Atomic orbital electron populations 1.21801 0.97364 0.98567 1.01140 1.19003 0.92917 0.90542 0.83932 1.00411 1.21353 1.32342 1.13082 0.89901 0.90481 1.25830 0.95036 0.95657 1.02326 1.70090 1.37030 1.24145 1.24389 0.85353 0.77846 0.79147 0.78036 1.19891 1.21359 1.18520 1.58973 1.12687 1.47319 0.98591 1.22588 0.82888 1.00747 1.05293 1.23135 0.98021 0.91084 0.85032 1.74783 1.21259 1.12425 1.11587 1.74315 1.20367 1.22410 0.96197 1.21768 1.00359 0.91496 0.91215 1.16532 0.96600 1.00750 0.82984 1.21768 1.01548 1.02707 0.90450 1.19549 1.01186 1.03141 0.92953 1.18349 0.96824 0.98590 0.84791 1.20435 1.03067 1.04440 0.88271 1.21153 0.94442 0.94998 0.98148 1.21452 1.00270 1.00388 0.97424 1.18132 0.91028 0.90596 0.90344 1.84729 1.17260 1.34015 1.96291 1.41774 1.31422 1.42269 1.03474 0.73187 1.46305 1.42210 1.25210 1.04263 1.22669 0.96022 0.86142 1.03580 0.91943 0.93788 0.95940 0.92748 0.96253 0.88465 0.88440 0.83540 0.82779 0.81556 0.83294 0.73196 0.87167 0.87258 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.11 8.77 71.99 0.63 -6.48 16 2 C 0.24 12.73 1.73 44.17 0.08 12.81 16 3 H -0.02 -1.32 8.11 -2.39 -0.02 -1.34 16 4 C -0.53 -28.11 7.88 25.60 0.20 -27.91 16 5 H 0.08 3.82 6.41 -2.91 -0.02 3.80 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 8 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 N -0.45 -19.31 4.68 -710.95 -3.33 -22.64 16 13 C 0.03 1.06 9.09 127.69 1.16 2.22 16 14 C 0.38 15.98 6.75 260.09 1.75 17.73 16 15 N -0.35 -17.09 8.97 -57.98 -0.52 -17.61 16 16 N -0.29 -12.72 12.21 -51.06 -0.62 -13.34 16 17 C 0.22 7.45 7.88 135.92 1.07 8.52 16 18 C 0.14 3.82 6.85 40.02 0.27 4.10 16 19 C -0.14 -3.79 10.98 23.76 0.26 -3.53 16 20 C -0.16 -3.81 6.30 -20.15 -0.13 -3.93 16 21 C 0.12 2.31 7.26 39.03 0.28 2.60 16 22 C -0.14 -1.72 10.06 22.38 0.23 -1.50 16 23 C -0.07 -0.71 10.01 22.29 0.22 -0.48 16 24 C -0.18 -2.46 9.97 22.37 0.22 -2.23 16 25 C 0.14 2.86 6.74 22.73 0.15 3.01 16 26 O -0.51 -9.65 13.51 -92.00 -1.24 -10.89 16 27 N -0.58 -10.99 5.65 -177.16 -1.00 -11.99 16 28 H 0.43 5.26 6.60 -92.71 -0.61 4.65 16 29 N -0.48 -15.08 3.24 -540.44 -1.75 -16.83 16 30 C 0.06 0.97 8.43 127.77 1.08 2.05 16 31 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 32 H 0.04 2.39 5.42 -2.39 -0.01 2.38 16 33 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 3.38 6.10 -2.38 -0.01 3.36 16 37 H 0.10 2.31 5.42 -2.39 -0.01 2.30 16 38 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 41 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.41 3.92 9.06 -74.06 -0.67 3.25 16 43 H 0.11 1.24 7.84 -2.39 -0.02 1.22 16 44 H 0.11 1.86 7.60 -2.39 -0.02 1.84 16 45 H 0.11 1.26 6.36 -2.39 -0.02 1.24 16 Total: -1.00 -79.55 366.22 1.53 -78.02 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.21 Total: 16.45 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 7.94 Total: 8.01 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -6.98 Total: -135.95 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.24 Total: -10.89 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -79.55 1.53 -78.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121364523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.514 kcal (2) G-P(sol) polarization free energy of solvation -79.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds