Wall clock time and date at job start Wed Apr 1 2020 00:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47188 * 2 1 4 4 C 1.50697 * 109.47293 * 240.00107 * 2 1 3 5 5 H 1.08005 * 120.00004 * 239.99698 * 4 2 1 6 6 C 1.37873 * 120.00241 * 59.99921 * 4 2 1 7 7 N 1.31512 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00357 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46917 * 89.99705 * 8 6 4 10 10 H 1.48490 * 109.47437 * 210.00067 * 8 6 4 11 11 H 1.48504 * 109.46807 * 330.00363 * 8 6 4 12 12 N 1.46900 * 109.47208 * 119.99893 * 2 1 3 13 13 C 1.46896 * 110.99996 * 58.95263 * 12 2 1 14 14 C 1.38409 * 110.99875 * 295.00023 * 12 2 1 15 15 N 1.31368 * 126.35292 * 0.02562 * 14 12 2 16 16 N 1.28509 * 110.14091 * 179.97438 * 15 14 12 17 17 C 1.31478 * 109.91551 * 359.97438 * 16 15 14 18 18 C 1.47229 * 126.50003 * 179.97438 * 17 16 15 19 19 C 1.35895 * 125.27529 * 345.02150 * 18 17 16 20 20 C 1.46090 * 106.93924 * 180.02562 * 19 18 17 21 21 C 1.40733 * 106.39355 * 0.02562 * 20 19 18 22 22 C 1.39133 * 119.43622 * 180.02562 * 21 20 19 23 23 C 1.37816 * 120.06459 * 359.70484 * 22 21 20 24 24 C 1.38745 * 120.75482 * 0.55393 * 23 22 21 25 25 C 1.38143 * 120.31709 * 359.46390 * 24 23 22 26 26 O 1.35862 * 120.22458 * 180.23431 * 25 24 23 27 27 N 1.37804 * 107.46212 * 359.97438 * 21 20 19 28 28 H 0.97003 * 125.12032 * 180.02562 * 27 21 20 29 29 N 1.36540 * 126.34924 * 180.28968 * 14 12 2 30 30 C 1.46492 * 127.17958 * 0.02562 * 29 14 12 31 31 H 1.09005 * 109.47188 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47041 * 300.00068 * 1 2 3 33 33 H 1.09000 * 109.47161 * 60.00041 * 1 2 3 34 34 H 0.97000 * 120.00131 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47252 * 296.04954 * 13 12 2 36 36 H 1.09007 * 109.46830 * 56.04713 * 13 12 2 37 37 H 1.09002 * 109.47399 * 176.04767 * 13 12 2 38 38 H 1.07999 * 126.53148 * 0.04423 * 19 18 17 39 39 H 1.07994 * 119.96477 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.62243 * 180.27296 * 23 22 21 41 41 H 1.08002 * 119.84574 * 179.74632 * 24 23 22 42 42 H 0.96702 * 114.00343 * 89.99942 * 26 25 24 43 43 H 1.08999 * 109.47126 * 270.17465 * 30 29 14 44 44 H 1.09003 * 109.47382 * 30.17180 * 30 29 14 45 45 H 1.09000 * 109.47368 * 150.17169 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1402 -5.1119 11 1 3.6310 -1.7565 -3.7118 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0760 1.2460 14 6 1.6701 -0.0031 2.3476 15 7 0.9927 1.1210 2.4051 16 7 0.8437 1.4857 3.6283 17 6 1.4176 0.6145 4.4285 18 6 1.4671 0.6758 5.8987 19 6 1.1833 1.7732 6.6484 20 6 1.3591 1.3901 8.0472 21 6 1.7517 0.0386 8.0426 22 6 1.9945 -0.6070 9.2509 23 6 1.8562 0.0771 10.4392 24 6 1.4644 1.4080 10.4503 25 6 1.2169 2.0719 9.2644 26 8 0.8379 3.3765 9.2771 27 7 1.8095 -0.3707 6.7280 28 1 2.0542 -1.2611 6.4310 29 7 1.9698 -0.3626 3.6303 30 6 2.7189 -1.5434 4.0666 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7096 1.1618 -3.4844 35 1 0.4419 -2.0730 1.3348 36 1 1.8167 -2.5950 0.3318 37 1 1.9617 -2.5868 2.1059 38 1 0.8844 2.7435 6.2803 39 1 2.2957 -1.6441 9.2573 40 1 2.0507 -0.4299 11.3728 41 1 1.3567 1.9288 11.3902 42 1 1.5755 4.0008 9.2421 43 1 2.0296 -2.3725 4.2263 44 1 3.4447 -1.8168 3.3007 45 1 3.2400 -1.3197 4.9975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121364524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:27 Heat of formation + Delta-G solvation = 125.156908 kcal Electronic energy + Delta-G solvation = -29115.927761 eV Core-core repulsion = 25136.735379 eV Total energy + Delta-G solvation = -3979.192383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.64876 -41.37916 -38.42233 -37.48348 -36.13806 -34.89061 -32.88141 -31.70826 -30.67045 -29.21688 -28.88440 -28.23407 -27.50544 -25.36157 -25.26776 -23.60314 -22.33752 -22.01503 -21.27093 -20.45681 -19.48572 -18.90429 -17.41935 -16.73523 -16.43267 -16.27392 -16.02068 -15.74519 -15.44161 -14.98485 -14.92355 -14.61236 -14.31829 -14.12152 -13.73173 -13.53090 -13.24495 -13.23667 -12.94193 -12.54707 -12.44220 -11.82469 -11.63099 -11.55938 -11.52638 -11.26038 -11.00546 -10.90336 -10.85639 -10.70463 -10.36774 -10.17021 -10.05015 -9.99094 -9.82713 -9.37546 -8.98869 -8.53474 -8.43059 -7.95258 -7.31602 -6.10380 -4.18533 0.58395 1.25572 1.72218 2.33457 2.56767 2.70355 3.24135 3.31535 3.33636 3.37517 3.46559 3.99086 4.16646 4.23624 4.42373 4.46768 4.53088 4.81237 4.81876 4.85880 5.03176 5.11684 5.14937 5.20909 5.29338 5.44293 5.51765 5.64615 5.78395 5.83651 5.87698 6.10123 6.14532 6.20245 6.31453 6.38204 6.48367 6.61180 6.71301 6.78397 6.97738 7.10512 7.11153 7.31629 7.49917 7.50807 7.64572 7.86586 8.18728 8.31620 8.81965 9.11555 9.46361 10.95947 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.002291 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.920226 B =12216.691847 C =12912.552751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.227 3.773 3 H 0.057 0.943 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.449 5.449 13 C 0.028 3.972 14 C 0.402 3.598 15 N -0.307 5.307 16 N -0.242 5.242 17 C 0.189 3.811 18 C 0.162 3.838 19 C -0.131 4.131 20 C -0.133 4.133 21 C 0.124 3.876 22 C -0.142 4.142 23 C -0.080 4.080 24 C -0.177 4.177 25 C 0.160 3.840 26 O -0.494 6.494 27 N -0.596 5.596 28 H 0.413 0.587 29 N -0.495 5.495 30 C 0.073 3.927 31 H 0.022 0.978 32 H 0.037 0.963 33 H 0.093 0.907 34 H 0.264 0.736 35 H 0.037 0.963 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.391 0.609 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -5.051 24.339 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.123 3.877 3 H 0.075 0.925 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.172 5.172 13 C -0.119 4.119 14 C 0.048 3.952 15 N -0.153 5.153 16 N -0.084 5.084 17 C -0.075 4.075 18 C 0.054 3.946 19 C -0.159 4.159 20 C -0.138 4.138 21 C 0.016 3.984 22 C -0.163 4.163 23 C -0.100 4.100 24 C -0.197 4.197 25 C 0.114 3.886 26 O -0.305 6.305 27 N -0.203 5.203 28 H 0.252 0.748 29 N -0.193 5.193 30 C -0.071 4.071 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.248 0.752 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.298 -4.104 23.528 24.110 hybrid contribution 0.972 -1.943 -0.689 2.279 sum 4.270 -6.047 22.840 24.009 Atomic orbital electron populations 1.22426 0.98877 0.99096 1.02802 1.19449 0.91393 0.94888 0.81931 0.92474 1.20989 1.32115 1.13120 0.89406 0.91789 1.24897 0.94961 0.95021 0.98977 1.69911 1.35892 1.22350 1.23805 0.86460 0.79126 0.79253 0.82327 1.20672 1.21091 1.19861 1.59278 1.55183 1.03325 0.99387 1.22487 0.98519 0.87740 1.03111 1.23355 0.93852 0.94353 0.83676 1.74982 1.17920 1.12162 1.10236 1.74423 1.16631 1.21022 0.96329 1.21343 1.04822 0.91181 0.90147 1.16834 1.05021 0.88372 0.84358 1.21684 1.06677 0.98437 0.89090 1.19372 1.07199 0.93870 0.93383 1.18021 1.02213 0.93769 0.84422 1.20019 1.06946 0.99998 0.89293 1.20650 0.98537 0.93770 0.97019 1.21115 1.05287 0.95914 0.97395 1.17872 0.96009 0.84546 0.90124 1.84781 1.36059 1.13437 1.96207 1.41973 1.61895 1.12424 1.03972 0.74819 1.46146 1.45042 1.21750 1.06381 1.22142 0.96883 0.85791 1.02243 0.95868 0.94368 0.88842 0.92622 0.94392 0.88267 0.93318 0.82177 0.85941 0.85208 0.85282 0.75188 0.90435 0.87790 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 8.26 37.16 0.31 -3.98 16 2 C 0.23 5.67 2.03 -68.87 -0.14 5.53 16 3 H 0.06 1.64 7.95 -51.93 -0.41 1.23 16 4 C -0.52 -13.48 7.88 -34.44 -0.27 -13.75 16 5 H 0.06 1.61 6.77 -52.48 -0.36 1.25 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -24.72 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.45 -9.37 4.80 -176.07 -0.84 -10.22 16 13 C 0.03 0.49 8.60 60.06 0.52 1.01 16 14 C 0.40 8.13 6.74 -318.81 -2.15 5.98 16 15 N -0.31 -6.94 9.28 30.32 0.28 -6.66 16 16 N -0.24 -4.97 12.21 32.51 0.40 -4.58 16 17 C 0.19 3.19 7.88 -153.71 -1.21 1.97 16 18 C 0.16 2.25 6.85 -82.35 -0.56 1.68 16 19 C -0.13 -1.79 10.98 -37.28 -0.41 -2.20 16 20 C -0.13 -1.62 6.30 -105.06 -0.66 -2.28 16 21 C 0.12 1.34 7.26 -83.91 -0.61 0.73 16 22 C -0.14 -1.19 10.06 -39.40 -0.40 -1.58 16 23 C -0.08 -0.61 10.01 -39.55 -0.40 -1.01 16 24 C -0.18 -1.54 9.97 -39.43 -0.39 -1.93 16 25 C 0.16 1.71 6.74 -38.87 -0.26 1.44 16 26 O -0.49 -4.83 13.51 -19.31 -0.26 -5.09 16 27 N -0.60 -6.36 5.65 -7.35 -0.04 -6.40 16 28 H 0.41 3.30 6.60 -40.82 -0.27 3.03 16 29 N -0.50 -7.88 3.24 -122.17 -0.40 -8.28 16 30 C 0.07 0.74 8.43 59.84 0.50 1.25 16 31 H 0.02 0.53 6.48 -51.93 -0.34 0.20 16 32 H 0.04 0.94 5.87 -51.93 -0.30 0.63 16 33 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 35 H 0.04 0.68 6.51 -51.93 -0.34 0.34 16 36 H 0.10 1.77 6.42 -51.92 -0.33 1.44 16 37 H 0.05 0.65 5.42 -51.93 -0.28 0.36 16 38 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.39 1.96 9.06 45.56 0.41 2.38 16 43 H 0.08 0.61 7.84 -51.93 -0.41 0.20 16 44 H 0.10 1.06 7.60 -51.93 -0.39 0.66 16 45 H 0.08 0.61 6.36 -51.93 -0.33 0.28 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -33.49 363.63 -10.50 -43.99 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.49 Total: 5.89 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -6.23 Total: -5.51 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.02 Total: -60.23 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.26 Total: -5.09 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.49 -10.50 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121364524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.150 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds