Wall clock time and date at job start Wed Apr 1 2020 00:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47188 * 2 1 4 4 C 1.50697 * 109.47293 * 240.00107 * 2 1 3 5 5 H 1.08005 * 120.00004 * 239.99698 * 4 2 1 6 6 C 1.37873 * 120.00241 * 59.99921 * 4 2 1 7 7 N 1.31512 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00357 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46917 * 89.99705 * 8 6 4 10 10 H 1.48490 * 109.47437 * 210.00067 * 8 6 4 11 11 H 1.48504 * 109.46807 * 330.00363 * 8 6 4 12 12 N 1.46900 * 109.47208 * 119.99893 * 2 1 3 13 13 C 1.46896 * 110.99996 * 58.95263 * 12 2 1 14 14 C 1.38409 * 110.99875 * 295.00023 * 12 2 1 15 15 N 1.31368 * 126.35292 * 0.02562 * 14 12 2 16 16 N 1.28509 * 110.14091 * 179.97438 * 15 14 12 17 17 C 1.31478 * 109.91551 * 359.97438 * 16 15 14 18 18 C 1.47229 * 126.50003 * 179.97438 * 17 16 15 19 19 C 1.35895 * 125.27529 * 345.02150 * 18 17 16 20 20 C 1.46090 * 106.93924 * 180.02562 * 19 18 17 21 21 C 1.40733 * 106.39355 * 0.02562 * 20 19 18 22 22 C 1.39133 * 119.43622 * 180.02562 * 21 20 19 23 23 C 1.37816 * 120.06459 * 359.70484 * 22 21 20 24 24 C 1.38745 * 120.75482 * 0.55393 * 23 22 21 25 25 C 1.38143 * 120.31709 * 359.46390 * 24 23 22 26 26 O 1.35862 * 120.22458 * 180.23431 * 25 24 23 27 27 N 1.37804 * 107.46212 * 359.97438 * 21 20 19 28 28 H 0.97003 * 125.12032 * 180.02562 * 27 21 20 29 29 N 1.36540 * 126.34924 * 180.28968 * 14 12 2 30 30 C 1.46492 * 127.17958 * 0.02562 * 29 14 12 31 31 H 1.09005 * 109.47188 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47041 * 300.00068 * 1 2 3 33 33 H 1.09000 * 109.47161 * 60.00041 * 1 2 3 34 34 H 0.97000 * 120.00131 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47252 * 296.04954 * 13 12 2 36 36 H 1.09007 * 109.46830 * 56.04713 * 13 12 2 37 37 H 1.09002 * 109.47399 * 176.04767 * 13 12 2 38 38 H 1.07999 * 126.53148 * 0.04423 * 19 18 17 39 39 H 1.07994 * 119.96477 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.62243 * 180.27296 * 23 22 21 41 41 H 1.08002 * 119.84574 * 179.74632 * 24 23 22 42 42 H 0.96702 * 114.00343 * 89.99942 * 26 25 24 43 43 H 1.08999 * 109.47126 * 270.17465 * 30 29 14 44 44 H 1.09003 * 109.47382 * 30.17180 * 30 29 14 45 45 H 1.09000 * 109.47368 * 150.17169 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1402 -5.1119 11 1 3.6310 -1.7565 -3.7118 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0760 1.2460 14 6 1.6701 -0.0031 2.3476 15 7 0.9927 1.1210 2.4051 16 7 0.8437 1.4857 3.6283 17 6 1.4176 0.6145 4.4285 18 6 1.4671 0.6758 5.8987 19 6 1.1833 1.7732 6.6484 20 6 1.3591 1.3901 8.0472 21 6 1.7517 0.0386 8.0426 22 6 1.9945 -0.6070 9.2509 23 6 1.8562 0.0771 10.4392 24 6 1.4644 1.4080 10.4503 25 6 1.2169 2.0719 9.2644 26 8 0.8379 3.3765 9.2771 27 7 1.8095 -0.3707 6.7280 28 1 2.0542 -1.2611 6.4310 29 7 1.9698 -0.3626 3.6303 30 6 2.7189 -1.5434 4.0666 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7096 1.1618 -3.4844 35 1 0.4419 -2.0730 1.3348 36 1 1.8167 -2.5950 0.3318 37 1 1.9617 -2.5868 2.1059 38 1 0.8844 2.7435 6.2803 39 1 2.2957 -1.6441 9.2573 40 1 2.0507 -0.4299 11.3728 41 1 1.3567 1.9288 11.3902 42 1 1.5755 4.0008 9.2421 43 1 2.0296 -2.3725 4.2263 44 1 3.4447 -1.8168 3.3007 45 1 3.2400 -1.3197 4.9975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121364524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:26 Heat of formation + Delta-G solvation = 103.189958 kcal Electronic energy + Delta-G solvation = -29116.880320 eV Core-core repulsion = 25136.735379 eV Total energy + Delta-G solvation = -3980.144941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.03733 -42.24396 -39.30205 -39.03127 -36.88301 -36.16036 -34.79001 -32.67578 -31.84826 -30.68921 -30.04770 -29.35329 -28.50221 -27.30365 -26.78143 -24.69571 -23.56285 -23.09687 -22.32941 -21.65599 -20.96138 -19.73541 -18.51760 -18.28176 -17.62907 -17.51129 -17.25305 -17.04507 -16.50222 -16.37869 -15.85700 -15.76178 -15.46338 -15.20186 -14.98788 -14.68325 -14.62930 -14.33763 -14.06641 -13.80579 -13.44415 -13.18998 -13.15405 -12.98393 -12.68808 -12.58285 -12.54983 -12.42420 -12.26681 -12.15154 -12.02922 -11.61093 -11.56088 -11.31746 -11.03751 -10.94899 -10.57497 -10.51066 -9.53827 -8.98489 -8.53951 -8.13423 -6.28993 -0.31345 0.49789 0.66631 1.06773 1.41670 1.45133 1.46565 1.56936 1.67713 2.08817 2.40728 2.76213 2.88847 3.12603 3.16871 3.34014 3.48503 3.79924 3.94955 4.09057 4.10941 4.12343 4.16564 4.22127 4.31747 4.45434 4.46736 4.55972 4.61102 4.77287 4.86933 4.90602 4.95033 4.97920 5.04228 5.08611 5.29471 5.45687 5.50737 5.53671 5.56632 5.56830 5.60462 5.75624 5.94384 5.98024 6.17108 6.37713 6.47701 6.80012 6.91542 7.39966 7.65923 8.93336 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.002291 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.920226 B =12216.691847 C =12912.552751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.006 0.994 4 C -0.525 4.525 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.451 5.451 13 C 0.029 3.971 14 C 0.384 3.616 15 N -0.357 5.357 16 N -0.292 5.292 17 C 0.217 3.783 18 C 0.140 3.860 19 C -0.136 4.136 20 C -0.163 4.163 21 C 0.123 3.877 22 C -0.141 4.141 23 C -0.068 4.068 24 C -0.176 4.176 25 C 0.144 3.856 26 O -0.510 6.510 27 N -0.581 5.581 28 H 0.427 0.573 29 N -0.484 5.484 30 C 0.057 3.943 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.263 0.737 35 H 0.027 0.973 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.409 0.591 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 -8.408 27.636 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.133 3.867 3 H 0.024 0.976 4 C -0.563 4.563 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.174 5.174 13 C -0.117 4.117 14 C 0.027 3.973 15 N -0.202 5.202 16 N -0.133 5.133 17 C -0.049 4.049 18 C 0.031 3.969 19 C -0.165 4.165 20 C -0.168 4.168 21 C 0.014 3.986 22 C -0.162 4.162 23 C -0.087 4.087 24 C -0.195 4.195 25 C 0.099 3.901 26 O -0.323 6.323 27 N -0.189 5.189 28 H 0.268 0.732 29 N -0.180 5.180 30 C -0.084 4.084 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.167 0.833 42 H 0.268 0.732 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.911 -7.501 26.863 28.319 hybrid contribution 0.498 -0.839 -1.350 1.666 sum 5.409 -8.340 25.513 27.381 Atomic orbital electron populations 1.22197 0.99191 0.99021 1.01014 1.18986 0.90930 0.92790 0.83949 0.97564 1.21299 1.31889 1.13230 0.89869 0.90743 1.25804 0.95097 0.95659 1.02251 1.70082 1.37268 1.24021 1.24348 0.85364 0.78998 0.77985 0.78101 1.19779 1.21479 1.18683 1.59163 1.55451 1.04392 0.98356 1.22601 0.98165 0.85997 1.04981 1.23168 0.94890 0.94316 0.84884 1.74813 1.19764 1.13834 1.11811 1.74308 1.19480 1.23283 0.96219 1.21771 1.01978 0.89879 0.91253 1.16533 1.07553 0.89840 0.82927 1.21767 1.06026 0.98099 0.90615 1.19549 1.09145 0.95220 0.92917 1.18349 1.01862 0.93367 0.84978 1.20436 1.06086 1.01483 0.88200 1.21153 0.96138 0.93157 0.98293 1.21452 1.04141 0.96618 0.97319 1.18133 0.96617 0.84931 0.90430 1.84729 1.37563 1.13807 1.96198 1.41774 1.61419 1.12219 1.03516 0.73183 1.46298 1.44483 1.22771 1.04467 1.22665 0.97545 0.84579 1.03602 0.94849 0.94913 0.91761 0.92788 0.95423 0.88743 0.88698 0.83566 0.82771 0.81550 0.83293 0.73200 0.87155 0.87276 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.10 8.26 71.98 0.59 -7.50 16 2 C 0.24 12.50 2.03 44.17 0.09 12.59 16 3 H 0.01 0.39 7.95 -2.38 -0.02 0.38 16 4 C -0.52 -27.82 7.88 25.60 0.20 -27.62 16 5 H 0.07 3.71 6.77 -2.91 -0.02 3.69 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 8 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.45 -19.13 4.80 -710.97 -3.41 -22.54 16 13 C 0.03 0.96 8.60 127.69 1.10 2.06 16 14 C 0.38 15.94 6.74 260.09 1.75 17.70 16 15 N -0.36 -17.18 9.28 -57.98 -0.54 -17.72 16 16 N -0.29 -12.74 12.21 -51.06 -0.62 -13.36 16 17 C 0.22 7.44 7.88 135.92 1.07 8.51 16 18 C 0.14 3.84 6.85 40.02 0.27 4.11 16 19 C -0.14 -3.82 10.98 23.76 0.26 -3.55 16 20 C -0.16 -3.82 6.30 -20.15 -0.13 -3.94 16 21 C 0.12 2.32 7.26 39.03 0.28 2.60 16 22 C -0.14 -1.73 10.06 22.38 0.23 -1.50 16 23 C -0.07 -0.71 10.01 22.29 0.22 -0.49 16 24 C -0.18 -2.46 9.97 22.37 0.22 -2.24 16 25 C 0.14 2.86 6.74 22.73 0.15 3.02 16 26 O -0.51 -9.68 13.51 -92.00 -1.24 -10.92 16 27 N -0.58 -11.00 5.65 -177.16 -1.00 -12.00 16 28 H 0.43 5.27 6.60 -92.71 -0.61 4.65 16 29 N -0.48 -15.08 3.24 -540.44 -1.75 -16.83 16 30 C 0.06 0.98 8.43 127.77 1.08 2.06 16 31 H 0.03 1.60 6.48 -2.38 -0.02 1.59 16 32 H 0.03 1.71 5.87 -2.39 -0.01 1.70 16 33 H 0.06 3.72 6.07 -2.39 -0.01 3.70 16 34 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.03 0.97 6.51 -2.39 -0.02 0.95 16 36 H 0.09 3.25 6.42 -2.38 -0.02 3.23 16 37 H 0.09 2.24 5.42 -2.39 -0.01 2.23 16 38 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 41 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.41 3.95 9.06 -74.06 -0.67 3.27 16 43 H 0.11 1.24 7.84 -2.39 -0.02 1.22 16 44 H 0.11 1.86 7.60 -2.39 -0.02 1.84 16 45 H 0.11 1.26 6.36 -2.39 -0.02 1.24 16 Total: -1.00 -79.10 363.63 1.35 -77.75 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.20 Total: 17.77 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 7.85 Total: 6.87 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -7.08 Total: -135.85 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.24 Total: -10.92 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -79.10 1.35 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121364524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.942 kcal (2) G-P(sol) polarization free energy of solvation -79.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds