Wall clock time and date at job start Wed Apr 1 2020 00:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00439 * 2 1 4 4 C 1.50697 * 109.47501 * 179.97438 * 3 2 1 5 5 N 1.29021 * 124.91543 * 90.00368 * 4 3 2 6 6 C 1.31783 * 117.12779 * 180.02562 * 5 4 3 7 7 C 1.50705 * 122.75237 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46669 * 305.01784 * 7 6 5 9 9 O 1.21281 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.33641 * 114.49751 * 0.22262 * 6 5 4 28 28 S 1.70979 * 124.91936 * 270.00176 * 4 3 2 29 29 H 1.09000 * 109.46634 * 59.99447 * 1 2 3 30 30 H 1.09001 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47146 * 300.00029 * 1 2 3 32 32 H 1.09007 * 109.46854 * 59.99810 * 3 2 1 33 33 H 1.08996 * 109.47032 * 300.00620 * 3 2 1 34 34 H 1.08997 * 109.47232 * 185.02290 * 7 6 5 35 35 H 1.08997 * 109.47322 * 65.01544 * 7 6 5 36 36 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 38 38 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 40 40 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 41 41 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 42 42 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 43 43 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 44 44 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 45 45 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 46 46 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 47 47 H 1.08000 * 126.03590 * 179.76619 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2492 1.1279 -1.0570 6 6 5.5507 1.0243 -0.8779 7 6 6.5276 0.9462 -2.0228 8 6 6.1433 -0.1908 -2.9342 9 8 5.1716 -0.8703 -2.6795 10 7 6.8795 -0.4524 -4.0325 11 6 6.5056 -1.5573 -4.9187 12 1 6.0963 -2.3756 -4.3265 13 6 5.4527 -1.0752 -5.9187 14 6 7.7426 -2.0446 -5.6759 15 6 8.7444 -2.6415 -4.6855 16 1 8.2568 -3.4220 -4.1014 17 6 9.9247 -3.2408 -5.4527 18 7 9.2289 -1.5902 -3.7877 19 6 9.7021 -1.9157 -2.5446 20 1 9.7185 -2.9476 -2.2262 21 6 10.1607 -0.9195 -1.6936 22 7 10.1457 0.3375 -2.0837 23 14 10.8068 -1.3636 0.0019 24 1 9.6905 -1.3328 0.9807 25 1 11.3960 -2.7263 -0.0343 26 1 11.8476 -0.3850 0.4071 27 6 5.9328 0.9890 0.4022 28 16 4.4877 1.1093 1.4030 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 7.5312 0.7761 -1.6331 35 1 6.5084 1.8820 -2.5813 36 1 7.6564 0.0913 -4.2364 37 1 5.8620 -0.2568 -6.5111 38 1 5.1748 -1.8971 -6.5785 39 1 4.5715 -0.7279 -5.3794 40 1 8.2032 -1.2058 -6.1977 41 1 7.4494 -2.8056 -6.3992 42 1 10.4123 -2.4603 -6.0368 43 1 10.6386 -3.6656 -4.7471 44 1 9.5643 -4.0230 -6.1207 45 1 9.2144 -0.6634 -4.0737 46 1 9.8106 0.5682 -2.9643 47 1 6.9482 0.9037 0.7601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135894135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:29 Heat of formation + Delta-G solvation = -22.717460 kcal Electronic energy + Delta-G solvation = -28548.395476 eV Core-core repulsion = 24665.941980 eV Total energy + Delta-G solvation = -3882.453496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98866 -38.90109 -37.83825 -36.73807 -34.27967 -32.59906 -32.19595 -30.63376 -28.84566 -28.22441 -27.47022 -26.33931 -26.07814 -23.51335 -22.90231 -21.26659 -20.29726 -19.78046 -19.39260 -17.61178 -17.40396 -16.68619 -16.33384 -15.85551 -15.79048 -15.59801 -15.02773 -14.39728 -14.28146 -14.01939 -13.94048 -13.59220 -13.32489 -13.07551 -13.05620 -12.81240 -12.47984 -12.23511 -12.17023 -12.04333 -11.71638 -11.65028 -11.61033 -11.43907 -11.15807 -10.95540 -10.76714 -10.47756 -10.37416 -10.09786 -10.04564 -9.91008 -9.39816 -9.22370 -9.19603 -9.05935 -8.97425 -8.50598 -8.30586 -7.02016 -6.12702 -3.11141 0.86906 1.56090 1.92340 2.91384 3.46073 3.49445 3.51982 3.66229 3.74488 3.93285 4.33950 4.62930 4.82324 5.07690 5.10515 5.15302 5.19375 5.28976 5.34486 5.44504 5.49071 5.51132 5.56613 5.59812 5.66375 5.72914 5.85299 5.94232 5.98139 5.98606 6.11329 6.16731 6.19924 6.35404 6.40949 6.48556 6.52382 6.58881 6.81623 6.91767 7.00714 7.21599 7.80855 8.02612 8.22405 8.70504 9.00261 9.18525 10.03115 10.19825 11.34120 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004021 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.785975 B = 6962.114089 C = 8953.612516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.146 3.854 4 C 0.031 3.969 5 N -0.422 5.422 6 C 0.093 3.907 7 C -0.074 4.074 8 C 0.533 3.467 9 O -0.541 6.541 10 N -0.704 5.704 11 C 0.153 3.847 12 H 0.081 0.919 13 C -0.161 4.161 14 C -0.134 4.134 15 C 0.175 3.825 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.727 5.727 19 C -0.312 4.312 20 H 0.061 0.939 21 C -0.045 4.045 22 N -0.946 5.946 23 Si 1.072 2.928 24 H -0.297 1.297 25 H -0.297 1.297 26 H -0.289 1.289 27 C -0.235 4.235 28 S 0.117 5.883 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.397 0.603 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.036 0.964 45 H 0.361 0.639 46 H 0.250 0.750 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 3.512 0.296 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C 0.066 3.934 4 C -0.248 4.248 5 N -0.137 5.137 6 C -0.039 4.039 7 C -0.116 4.116 8 C 0.318 3.682 9 O -0.418 6.418 10 N -0.356 5.356 11 C 0.048 3.952 12 H 0.099 0.901 13 C -0.220 4.220 14 C -0.173 4.173 15 C 0.065 3.935 16 H 0.066 0.934 17 C -0.223 4.223 18 N -0.371 5.371 19 C -0.443 4.443 20 H 0.079 0.921 21 C -0.241 4.241 22 N -0.593 5.593 23 Si 0.904 3.096 24 H -0.225 1.225 25 H -0.224 1.224 26 H -0.215 1.215 27 C -0.374 4.374 28 S 0.371 5.629 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.234 0.766 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.196 0.804 46 H 0.061 0.939 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.089 3.269 2.550 14.686 hybrid contribution 0.399 -0.156 -2.299 2.338 sum -13.690 3.112 0.252 14.042 Atomic orbital electron populations 1.22771 0.80541 1.03118 0.99983 1.88031 1.19799 1.26475 1.95405 1.20691 0.85042 0.85823 1.01795 1.26356 0.99905 1.07179 0.91376 1.65934 1.04554 1.12092 1.31141 1.19655 0.89458 1.01183 0.93593 1.20362 0.99303 0.98724 0.93207 1.20040 0.82382 0.84958 0.80785 1.90670 1.27607 1.50490 1.73025 1.45896 1.30860 1.33779 1.25105 1.20741 0.94017 0.89976 0.90512 0.90078 1.22197 0.99624 1.01085 0.99061 1.22217 0.95810 1.00889 0.98338 1.20210 0.91509 0.91668 0.90065 0.93378 1.22404 1.00581 0.99550 0.99766 1.42471 1.76191 1.03654 1.14810 1.20071 1.37105 0.94822 0.92310 0.92065 1.25517 1.01047 0.93461 1.04080 1.70929 1.50665 1.16787 1.20937 0.83307 0.76431 0.74479 0.75350 1.22475 1.22364 1.21464 1.27003 1.03398 1.11327 0.95674 1.83646 0.98439 1.67980 1.12848 0.93795 0.89317 0.93969 0.91297 0.90417 0.84847 0.88226 0.76629 0.92952 0.92304 0.92300 0.91924 0.90838 0.93749 0.92852 0.94483 0.80428 0.93872 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.37 10.69 -35.23 -0.38 -5.75 16 3 C 0.15 1.85 6.51 36.00 0.23 2.08 16 4 C 0.03 0.49 7.02 -13.46 -0.09 0.40 16 5 N -0.42 -8.01 9.68 -8.06 -0.08 -8.08 16 6 C 0.09 1.77 5.64 -84.22 -0.47 1.30 16 7 C -0.07 -1.40 6.20 -29.03 -0.18 -1.58 16 8 C 0.53 11.01 7.76 -10.98 -0.09 10.93 16 9 O -0.54 -12.89 15.11 5.56 0.08 -12.81 16 10 N -0.70 -12.89 3.80 -53.81 -0.20 -13.10 16 11 C 0.15 2.57 2.58 -67.93 -0.17 2.40 16 12 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 13 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 14 C -0.13 -2.07 4.43 -26.73 -0.12 -2.19 16 15 C 0.18 3.33 2.89 -67.93 -0.20 3.13 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 18 N -0.73 -16.28 3.84 -53.43 -0.21 -16.49 16 19 C -0.31 -8.12 9.93 -15.06 -0.15 -8.27 16 20 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 21 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 22 N -0.95 -25.48 13.44 55.49 0.75 -24.74 16 23 Si 1.07 24.90 29.92 -169.99 -5.09 19.81 16 24 H -0.30 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 C -0.24 -4.05 11.07 29.12 0.32 -3.73 16 28 S 0.12 1.69 23.18 -107.50 -2.49 -0.80 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.13 2.78 7.77 -51.93 -0.40 2.38 16 35 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.40 7.11 6.51 -40.82 -0.27 6.85 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.36 8.04 4.54 -40.82 -0.19 7.85 16 46 H 0.25 6.52 6.77 -40.82 -0.28 6.24 16 47 H 0.18 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -32.41 401.59 -8.25 -40.66 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -7.49 Total: 15.12 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.81 Total: 0.13 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.26 Total: -62.41 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.29 Total: -18.56 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.81 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.49 Total: -0.80 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.41 -8.25 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.943 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds