Wall clock time and date at job start Wed Apr 1 2020 00:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00439 * 2 1 4 4 C 1.50697 * 109.47501 * 179.97438 * 3 2 1 5 5 N 1.29021 * 124.91543 * 90.00368 * 4 3 2 6 6 C 1.31783 * 117.12779 * 180.02562 * 5 4 3 7 7 C 1.50705 * 122.75237 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46669 * 305.01784 * 7 6 5 9 9 O 1.21281 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.33641 * 114.49751 * 0.22262 * 6 5 4 28 28 S 1.70979 * 124.91936 * 270.00176 * 4 3 2 29 29 H 1.09000 * 109.46634 * 59.99447 * 1 2 3 30 30 H 1.09001 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47146 * 300.00029 * 1 2 3 32 32 H 1.09007 * 109.46854 * 59.99810 * 3 2 1 33 33 H 1.08996 * 109.47032 * 300.00620 * 3 2 1 34 34 H 1.08997 * 109.47232 * 185.02290 * 7 6 5 35 35 H 1.08997 * 109.47322 * 65.01544 * 7 6 5 36 36 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 38 38 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 40 40 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 41 41 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 42 42 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 43 43 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 44 44 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 45 45 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 46 46 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 47 47 H 1.08000 * 126.03590 * 179.76619 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2492 1.1279 -1.0570 6 6 5.5507 1.0243 -0.8779 7 6 6.5276 0.9462 -2.0228 8 6 6.1433 -0.1908 -2.9342 9 8 5.1716 -0.8703 -2.6795 10 7 6.8795 -0.4524 -4.0325 11 6 6.5056 -1.5573 -4.9187 12 1 6.0963 -2.3756 -4.3265 13 6 5.4527 -1.0752 -5.9187 14 6 7.7426 -2.0446 -5.6759 15 6 8.7444 -2.6415 -4.6855 16 1 8.2568 -3.4220 -4.1014 17 6 9.9247 -3.2408 -5.4527 18 7 9.2289 -1.5902 -3.7877 19 6 9.7021 -1.9157 -2.5446 20 1 9.7185 -2.9476 -2.2262 21 6 10.1607 -0.9195 -1.6936 22 7 10.1457 0.3375 -2.0837 23 14 10.8068 -1.3636 0.0019 24 1 9.6905 -1.3328 0.9807 25 1 11.3960 -2.7263 -0.0343 26 1 11.8476 -0.3850 0.4071 27 6 5.9328 0.9890 0.4022 28 16 4.4877 1.1093 1.4030 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 7.5312 0.7761 -1.6331 35 1 6.5084 1.8820 -2.5813 36 1 7.6564 0.0913 -4.2364 37 1 5.8620 -0.2568 -6.5111 38 1 5.1748 -1.8971 -6.5785 39 1 4.5715 -0.7279 -5.3794 40 1 8.2032 -1.2058 -6.1977 41 1 7.4494 -2.8056 -6.3992 42 1 10.4123 -2.4603 -6.0368 43 1 10.6386 -3.6656 -4.7471 44 1 9.5643 -4.0230 -6.1207 45 1 9.2144 -0.6634 -4.0737 46 1 9.8106 0.5682 -2.9643 47 1 6.9482 0.9037 0.7601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135894135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:28 Heat of formation + Delta-G solvation = -44.359550 kcal Electronic energy + Delta-G solvation = -28549.333947 eV Core-core repulsion = 24665.941980 eV Total energy + Delta-G solvation = -3883.391968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.38622 -40.33695 -38.82324 -38.32123 -35.95806 -34.27420 -33.60768 -32.09384 -30.25490 -29.70600 -28.75407 -27.66534 -26.93164 -25.46408 -24.14353 -22.65409 -21.80061 -21.28195 -20.74025 -19.34344 -18.89513 -17.88902 -17.58597 -17.23738 -16.88839 -16.73327 -16.60979 -15.96142 -15.87684 -15.51361 -15.37039 -15.20486 -14.56731 -14.51354 -14.48043 -14.11278 -13.68410 -13.54546 -13.46658 -13.22571 -13.14715 -12.94945 -12.88994 -12.73428 -12.52127 -12.41797 -12.33929 -12.17727 -11.89455 -11.78950 -11.62590 -11.10741 -10.87047 -10.82539 -10.78214 -10.62684 -10.38305 -9.87696 -9.76618 -8.90377 -8.21222 -5.13718 -0.39012 0.35536 0.65574 1.59215 1.59703 1.65572 1.80387 1.85402 2.46770 2.72738 2.75278 3.26329 3.51397 3.68551 3.77231 3.85736 4.04777 4.06667 4.13207 4.24824 4.27595 4.32431 4.37856 4.48314 4.49791 4.53269 4.57211 4.61499 4.73499 4.75350 4.78799 4.84235 4.84581 4.99246 5.03516 5.06805 5.13019 5.30004 5.33595 5.53712 5.72139 5.75397 6.09108 6.65467 6.68721 6.76288 7.24481 7.43119 8.11796 8.25762 9.28785 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004021 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.785975 B = 6962.114089 C = 8953.612516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.144 3.856 4 C 0.018 3.982 5 N -0.458 5.458 6 C 0.071 3.929 7 C -0.066 4.066 8 C 0.527 3.473 9 O -0.578 6.578 10 N -0.696 5.696 11 C 0.149 3.851 12 H 0.049 0.951 13 C -0.149 4.149 14 C -0.119 4.119 15 C 0.168 3.832 16 H 0.023 0.977 17 C -0.153 4.153 18 N -0.731 5.731 19 C -0.317 4.317 20 H 0.043 0.957 21 C -0.083 4.083 22 N -0.958 5.958 23 Si 1.106 2.894 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.290 1.290 27 C -0.261 4.261 28 S 0.189 5.811 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.027 0.973 44 H 0.069 0.931 45 H 0.362 0.638 46 H 0.248 0.752 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 3.778 -0.210 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C 0.065 3.935 4 C -0.260 4.260 5 N -0.174 5.174 6 C -0.062 4.062 7 C -0.109 4.109 8 C 0.313 3.687 9 O -0.458 6.458 10 N -0.348 5.348 11 C 0.044 3.956 12 H 0.067 0.933 13 C -0.207 4.207 14 C -0.157 4.157 15 C 0.060 3.940 16 H 0.041 0.959 17 C -0.212 4.212 18 N -0.375 5.375 19 C -0.450 4.450 20 H 0.061 0.939 21 C -0.276 4.276 22 N -0.607 5.607 23 Si 0.935 3.065 24 H -0.220 1.220 25 H -0.216 1.216 26 H -0.216 1.216 27 C -0.400 4.400 28 S 0.444 5.556 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.237 0.763 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.196 0.804 46 H 0.059 0.941 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.124 3.521 2.008 15.658 hybrid contribution 0.653 -0.297 -2.121 2.239 sum -14.471 3.224 -0.113 14.826 Atomic orbital electron populations 1.23000 0.78165 1.04089 1.01671 1.87962 1.22476 1.27395 1.95757 1.20933 0.82863 0.85813 1.03931 1.27107 1.01702 1.05543 0.91691 1.65947 1.04637 1.13971 1.32868 1.19702 0.89908 1.02526 0.94023 1.20241 0.98275 0.98900 0.93447 1.20361 0.82054 0.84999 0.81284 1.90636 1.29295 1.51839 1.74049 1.45932 1.30284 1.33824 1.24720 1.20868 0.95482 0.88707 0.90507 0.93302 1.22079 0.97660 1.02552 0.98450 1.22124 0.93873 1.02116 0.97593 1.20396 0.92821 0.90555 0.90269 0.95901 1.22253 0.99139 1.00414 0.99436 1.42490 1.76248 1.04454 1.14344 1.20133 1.36996 0.93926 0.93903 0.93873 1.26363 1.01605 0.93381 1.06269 1.70976 1.51479 1.17084 1.21127 0.82839 0.76064 0.74463 0.73122 1.21958 1.21641 1.21643 1.27191 1.04974 1.11604 0.96251 1.83257 0.95635 1.66230 1.10505 0.92891 0.88811 0.91435 0.87538 0.89826 0.86913 0.86505 0.76317 0.91131 0.89694 0.94661 0.90346 0.87432 0.93219 0.95407 0.91183 0.80365 0.94081 0.79896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -11.36 10.69 -148.98 -1.59 -12.95 16 3 C 0.14 3.42 6.51 71.23 0.46 3.88 16 4 C 0.02 0.56 7.02 88.52 0.62 1.18 16 5 N -0.46 -17.68 9.68 -179.40 -1.74 -19.42 16 6 C 0.07 2.77 5.64 41.52 0.23 3.01 16 7 C -0.07 -2.62 6.20 29.11 0.18 -2.44 16 8 C 0.53 22.55 7.76 87.66 0.68 23.23 16 9 O -0.58 -28.70 15.11 -3.03 -0.05 -28.74 16 10 N -0.70 -25.87 3.80 -442.53 -1.68 -27.55 16 11 C 0.15 4.95 2.58 44.99 0.12 5.06 16 12 H 0.05 1.95 7.58 -2.39 -0.02 1.94 16 13 C -0.15 -4.06 9.48 71.98 0.68 -3.38 16 14 C -0.12 -3.41 4.43 30.60 0.14 -3.28 16 15 C 0.17 6.29 2.89 44.99 0.13 6.42 16 16 H 0.02 0.97 8.08 -2.38 -0.02 0.95 16 17 C -0.15 -5.11 9.49 71.98 0.68 -4.42 16 18 N -0.73 -33.01 3.84 -322.94 -1.24 -34.25 16 19 C -0.32 -16.88 9.93 84.03 0.83 -16.04 16 20 H 0.04 2.41 7.83 -2.91 -0.02 2.39 16 21 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 22 N -0.96 -52.21 13.44 21.65 0.29 -51.92 16 23 Si 1.11 50.88 29.92 68.60 2.05 52.93 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 C -0.26 -9.14 11.07 66.78 0.74 -8.40 16 28 S 0.19 5.24 23.18 -56.49 -1.31 3.93 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.11 4.93 7.77 -2.39 -0.02 4.91 16 35 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 36 H 0.40 14.41 6.51 -92.71 -0.60 13.81 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.36 16.17 4.54 -92.71 -0.42 15.75 16 46 H 0.25 13.12 6.77 -92.71 -0.63 12.50 16 47 H 0.18 6.18 8.06 -2.91 -0.02 6.16 16 Total: -1.00 -72.43 401.59 2.05 -70.38 By element: Atomic # 1 Polarization: 44.94 SS G_CDS: 0.09 Total: 45.04 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 7.22 Total: 2.55 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -4.37 Total: -133.14 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.64 Total: -41.69 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.31 Total: 3.93 kcal Total: -72.43 2.05 -70.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.025 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds