Wall clock time and date at job start Wed Apr 1 2020 00:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00236 * 2 1 4 4 C 1.50696 * 109.47275 * 180.02562 * 3 2 1 5 5 N 1.29023 * 124.92183 * 89.99821 * 4 3 2 6 6 C 1.31774 * 117.12863 * 180.02562 * 5 4 3 7 7 C 1.50704 * 122.75283 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47153 * 305.02813 * 7 6 5 9 9 O 1.21275 * 119.99632 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99690 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99686 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 15 15 C 1.53004 * 109.47236 * 64.99775 * 14 11 10 16 16 H 1.08998 * 109.46828 * 305.00171 * 15 14 11 17 17 C 1.53002 * 109.47219 * 185.00185 * 15 14 11 18 18 N 1.46498 * 109.46986 * 64.99835 * 15 14 11 19 19 C 1.36934 * 120.00410 * 204.99926 * 18 15 14 20 20 H 1.08002 * 119.99468 * 0.02562 * 19 18 15 21 21 C 1.38807 * 120.00378 * 180.02562 * 19 18 15 22 22 N 1.31620 * 120.00163 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99882 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47286 * 90.00016 * 23 21 19 25 25 H 1.48509 * 109.46918 * 209.99804 * 23 21 19 26 26 H 1.48495 * 109.46892 * 329.99665 * 23 21 19 27 27 C 1.33640 * 114.50245 * 0.23132 * 6 5 4 28 28 S 1.70982 * 124.91355 * 269.99764 * 4 3 2 29 29 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47029 * 300.00180 * 1 2 3 31 31 H 1.09006 * 109.47020 * 59.99679 * 1 2 3 32 32 H 1.09005 * 109.47159 * 60.00061 * 3 2 1 33 33 H 1.09004 * 109.47245 * 299.99940 * 3 2 1 34 34 H 1.08996 * 109.47513 * 185.02273 * 7 6 5 35 35 H 1.09006 * 109.46832 * 65.02919 * 7 6 5 36 36 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 38 38 H 1.09002 * 109.47075 * 59.99363 * 13 11 10 39 39 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47630 * 184.99905 * 14 11 10 41 41 H 1.09004 * 109.47346 * 305.00035 * 14 11 10 42 42 H 1.08998 * 109.47209 * 299.99752 * 17 15 14 43 43 H 1.09002 * 109.47230 * 59.99942 * 17 15 14 44 44 H 1.09001 * 109.46752 * 179.97438 * 17 15 14 45 45 H 0.97005 * 119.99875 * 25.00588 * 18 15 14 46 46 H 0.97006 * 119.99893 * 180.02562 * 22 21 19 47 47 H 1.07998 * 126.04494 * 179.76673 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2484 1.1282 -1.0588 6 6 5.5499 1.0246 -0.8807 7 6 6.5260 0.9467 -2.0263 8 6 6.1410 -0.1898 -2.9380 9 8 5.1700 -0.8699 -2.6823 10 7 6.8758 -0.4504 -4.0373 11 6 6.5019 -1.5556 -4.9232 12 1 6.0944 -2.3745 -4.3304 13 6 5.4469 -1.0746 -5.9215 14 6 7.7382 -2.0415 -5.6823 15 6 8.7424 -2.6372 -4.6935 16 1 8.9681 -1.9043 -3.9190 17 6 10.0285 -3.0089 -5.4343 18 7 8.1690 -3.8368 -4.0784 19 6 8.6034 -4.2494 -2.8471 20 1 9.3685 -3.6901 -2.3292 21 6 8.0605 -5.3863 -2.2646 22 7 8.4784 -5.7831 -1.0812 23 14 6.7376 -6.3540 -3.1607 24 1 7.3737 -7.3943 -4.0083 25 1 5.8418 -7.0027 -2.1696 26 1 5.9456 -5.4344 -4.0163 27 6 5.9331 0.9887 0.3991 28 16 4.4887 1.1089 1.4010 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 7.5299 0.7766 -1.6374 35 1 6.5065 1.8829 -2.5844 36 1 7.6523 0.0938 -4.2419 37 1 4.5661 -0.7284 -5.3808 38 1 5.8544 -0.2556 -6.5143 39 1 5.1684 -1.8970 -6.5804 40 1 7.4449 -2.8027 -6.4053 41 1 8.1971 -1.2019 -6.2046 42 1 9.8028 -3.7419 -6.2088 43 1 10.4551 -2.1163 -5.8919 44 1 10.7439 -3.4329 -4.7297 45 1 7.4815 -4.3390 -4.5435 46 1 8.0992 -6.5779 -0.6743 47 1 6.9487 0.9033 0.7562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135894136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:31 Heat of formation + Delta-G solvation = -25.212125 kcal Electronic energy + Delta-G solvation = -27874.298708 eV Core-core repulsion = 23991.737035 eV Total energy + Delta-G solvation = -3882.561673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25859 -39.08171 -37.92189 -36.81853 -34.44933 -32.71493 -32.05725 -30.86202 -29.25805 -28.90059 -27.77038 -26.34768 -26.16602 -23.34081 -23.05510 -21.38561 -20.33294 -19.74324 -19.71340 -17.97669 -17.53080 -16.81599 -16.65162 -16.05866 -15.89896 -15.71257 -14.90070 -14.74614 -14.31674 -14.24052 -14.06058 -13.68315 -13.44005 -13.21002 -13.03462 -12.69873 -12.57750 -12.41102 -12.37734 -12.22241 -11.93546 -11.86590 -11.68424 -11.59473 -11.39553 -11.12250 -10.87125 -10.61825 -10.40562 -10.21598 -9.98108 -9.89998 -9.61351 -9.50649 -9.49052 -9.30779 -8.84847 -8.77083 -8.62281 -7.17917 -5.68829 -3.03076 0.62644 1.34469 1.70008 2.65360 3.11531 3.45694 3.49869 3.54075 3.55622 3.66181 4.14153 4.66936 4.68551 4.85846 5.01608 5.04984 5.09775 5.10549 5.19541 5.23444 5.27242 5.32925 5.37428 5.41259 5.48341 5.59730 5.64823 5.69428 5.83562 5.89837 5.94750 6.06515 6.08651 6.23323 6.33676 6.37721 6.48323 6.63740 6.81134 6.85219 6.94267 7.02695 7.77847 7.89524 8.06223 8.50211 8.69682 9.29098 10.02401 10.21493 11.49865 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009936 B = 0.003337 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.366415 B = 8387.600613 C = 9083.411598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.144 3.856 4 C 0.037 3.963 5 N -0.424 5.424 6 C 0.087 3.913 7 C -0.066 4.066 8 C 0.517 3.483 9 O -0.513 6.513 10 N -0.721 5.721 11 C 0.145 3.855 12 H 0.098 0.902 13 C -0.161 4.161 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.054 0.946 17 C -0.166 4.166 18 N -0.745 5.745 19 C -0.237 4.237 20 H 0.087 0.913 21 C 0.006 3.994 22 N -0.936 5.936 23 Si 0.881 3.119 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.276 1.276 27 C -0.244 4.244 28 S 0.134 5.866 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.394 0.606 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.359 0.641 46 H 0.258 0.742 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 20.879 -1.363 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.064 3.936 4 C -0.242 4.242 5 N -0.139 5.139 6 C -0.046 4.046 7 C -0.109 4.109 8 C 0.302 3.698 9 O -0.387 6.387 10 N -0.373 5.373 11 C 0.041 3.959 12 H 0.116 0.884 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.068 3.932 16 H 0.072 0.928 17 C -0.226 4.226 18 N -0.389 5.389 19 C -0.367 4.367 20 H 0.105 0.895 21 C -0.190 4.190 22 N -0.584 5.584 23 Si 0.712 3.288 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.202 1.202 27 C -0.383 4.383 28 S 0.389 5.611 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.227 0.773 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.192 0.808 46 H 0.068 0.932 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.994 20.218 -0.353 22.557 hybrid contribution -0.014 -0.575 -1.335 1.454 sum -10.008 19.643 -1.688 22.110 Atomic orbital electron populations 1.22791 0.80311 1.03332 0.99979 1.88052 1.19992 1.26136 1.95402 1.20714 0.84863 0.86119 1.01916 1.26415 1.00137 1.06329 0.91304 1.65899 1.04355 1.12432 1.31248 1.19532 0.89826 1.01994 0.93238 1.20236 0.97889 0.99322 0.93475 1.20112 0.83447 0.85142 0.81147 1.90771 1.26678 1.48967 1.72248 1.45890 1.31335 1.34476 1.25592 1.20942 0.94526 0.89645 0.90810 0.88414 1.22182 0.99545 1.01104 0.99096 1.22213 0.95968 1.00532 0.98555 1.20188 0.90712 0.89412 0.92902 0.92786 1.22426 0.99995 0.99678 1.00460 1.42777 1.46558 1.29045 1.20470 1.18990 1.17634 1.07361 0.92692 0.89486 1.24619 0.99467 0.98367 0.96508 1.69694 1.45935 1.26577 1.16170 0.86582 0.82660 0.80360 0.79182 1.21288 1.21850 1.20238 1.26907 1.03613 1.12034 0.95765 1.83783 0.97919 1.66945 1.12457 0.89150 0.93915 0.93738 0.91183 0.90323 0.87123 0.87568 0.77297 0.92371 0.93023 0.92095 0.90905 0.91600 0.93670 0.94384 0.92459 0.80777 0.93212 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.21 10.69 -35.23 -0.38 -5.58 16 3 C 0.14 1.65 6.51 36.00 0.23 1.88 16 4 C 0.04 0.52 7.02 -13.46 -0.09 0.43 16 5 N -0.42 -6.96 9.68 -8.06 -0.08 -7.04 16 6 C 0.09 1.30 5.64 -84.23 -0.47 0.83 16 7 C -0.07 -0.84 6.19 -29.03 -0.18 -1.02 16 8 C 0.52 8.76 7.76 -10.99 -0.09 8.68 16 9 O -0.51 -11.47 15.11 5.56 0.08 -11.38 16 10 N -0.72 -10.41 4.45 -53.80 -0.24 -10.65 16 11 C 0.15 2.34 2.52 -67.93 -0.17 2.16 16 12 H 0.10 2.07 7.06 -51.93 -0.37 1.71 16 13 C -0.16 -2.24 9.48 37.16 0.35 -1.88 16 14 C -0.13 -1.96 4.29 -26.73 -0.11 -2.07 16 15 C 0.18 3.25 2.84 -67.93 -0.19 3.06 16 16 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 17 C -0.17 -2.78 9.49 37.16 0.35 -2.43 16 18 N -0.75 -17.63 4.30 -53.43 -0.23 -17.86 16 19 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 20 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.94 -30.30 13.97 55.49 0.78 -29.53 16 23 Si 0.88 23.39 27.74 -169.99 -4.71 18.67 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 27 C -0.24 -3.18 11.07 29.12 0.32 -2.86 16 28 S 0.13 1.63 23.18 -107.50 -2.49 -0.86 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 1.14 8.03 -51.93 -0.42 0.72 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.36 8.57 5.66 -40.82 -0.23 8.34 16 46 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 47 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -38.95 404.89 -8.05 -47.00 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.69 Total: 9.80 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 0.81 Total: 1.33 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: 0.23 Total: -65.07 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.29 Total: -16.97 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.71 Total: 18.67 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.49 Total: -0.86 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.95 -8.05 -47.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.786 kcal (2) G-P(sol) polarization free energy of solvation -38.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds