Wall clock time and date at job start Wed Apr 1 2020 00:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00236 * 2 1 4 4 C 1.50696 * 109.47275 * 180.02562 * 3 2 1 5 5 N 1.29023 * 124.92183 * 89.99821 * 4 3 2 6 6 C 1.31774 * 117.12863 * 180.02562 * 5 4 3 7 7 C 1.50704 * 122.75283 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47153 * 305.02813 * 7 6 5 9 9 O 1.21275 * 119.99632 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99690 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99686 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 15 15 C 1.53004 * 109.47236 * 64.99775 * 14 11 10 16 16 H 1.08998 * 109.46828 * 305.00171 * 15 14 11 17 17 C 1.53002 * 109.47219 * 185.00185 * 15 14 11 18 18 N 1.46498 * 109.46986 * 64.99835 * 15 14 11 19 19 C 1.36934 * 120.00410 * 204.99926 * 18 15 14 20 20 H 1.08002 * 119.99468 * 0.02562 * 19 18 15 21 21 C 1.38807 * 120.00378 * 180.02562 * 19 18 15 22 22 N 1.31620 * 120.00163 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99882 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47286 * 90.00016 * 23 21 19 25 25 H 1.48509 * 109.46918 * 209.99804 * 23 21 19 26 26 H 1.48495 * 109.46892 * 329.99665 * 23 21 19 27 27 C 1.33640 * 114.50245 * 0.23132 * 6 5 4 28 28 S 1.70982 * 124.91355 * 269.99764 * 4 3 2 29 29 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47029 * 300.00180 * 1 2 3 31 31 H 1.09006 * 109.47020 * 59.99679 * 1 2 3 32 32 H 1.09005 * 109.47159 * 60.00061 * 3 2 1 33 33 H 1.09004 * 109.47245 * 299.99940 * 3 2 1 34 34 H 1.08996 * 109.47513 * 185.02273 * 7 6 5 35 35 H 1.09006 * 109.46832 * 65.02919 * 7 6 5 36 36 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 38 38 H 1.09002 * 109.47075 * 59.99363 * 13 11 10 39 39 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47630 * 184.99905 * 14 11 10 41 41 H 1.09004 * 109.47346 * 305.00035 * 14 11 10 42 42 H 1.08998 * 109.47209 * 299.99752 * 17 15 14 43 43 H 1.09002 * 109.47230 * 59.99942 * 17 15 14 44 44 H 1.09001 * 109.46752 * 179.97438 * 17 15 14 45 45 H 0.97005 * 119.99875 * 25.00588 * 18 15 14 46 46 H 0.97006 * 119.99893 * 180.02562 * 22 21 19 47 47 H 1.07998 * 126.04494 * 179.76673 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2484 1.1282 -1.0588 6 6 5.5499 1.0246 -0.8807 7 6 6.5260 0.9467 -2.0263 8 6 6.1410 -0.1898 -2.9380 9 8 5.1700 -0.8699 -2.6823 10 7 6.8758 -0.4504 -4.0373 11 6 6.5019 -1.5556 -4.9232 12 1 6.0944 -2.3745 -4.3304 13 6 5.4469 -1.0746 -5.9215 14 6 7.7382 -2.0415 -5.6823 15 6 8.7424 -2.6372 -4.6935 16 1 8.9681 -1.9043 -3.9190 17 6 10.0285 -3.0089 -5.4343 18 7 8.1690 -3.8368 -4.0784 19 6 8.6034 -4.2494 -2.8471 20 1 9.3685 -3.6901 -2.3292 21 6 8.0605 -5.3863 -2.2646 22 7 8.4784 -5.7831 -1.0812 23 14 6.7376 -6.3540 -3.1607 24 1 7.3737 -7.3943 -4.0083 25 1 5.8418 -7.0027 -2.1696 26 1 5.9456 -5.4344 -4.0163 27 6 5.9331 0.9887 0.3991 28 16 4.4887 1.1089 1.4010 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 7.5299 0.7766 -1.6374 35 1 6.5065 1.8829 -2.5844 36 1 7.6523 0.0938 -4.2419 37 1 4.5661 -0.7284 -5.3808 38 1 5.8544 -0.2556 -6.5143 39 1 5.1684 -1.8970 -6.5804 40 1 7.4449 -2.8027 -6.4053 41 1 8.1971 -1.2019 -6.2046 42 1 9.8028 -3.7419 -6.2088 43 1 10.4551 -2.1163 -5.8919 44 1 10.7439 -3.4329 -4.7297 45 1 7.4815 -4.3390 -4.5435 46 1 8.0992 -6.5779 -0.6743 47 1 6.9487 0.9033 0.7562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135894136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:30 Heat of formation + Delta-G solvation = -55.404294 kcal Electronic energy + Delta-G solvation = -27875.607939 eV Core-core repulsion = 23991.737035 eV Total energy + Delta-G solvation = -3883.870904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36649 -40.28833 -38.83830 -38.30502 -36.06045 -34.10373 -33.69840 -32.20420 -31.01120 -29.88662 -28.75284 -27.58959 -26.96611 -25.34945 -24.14428 -22.60216 -21.72009 -21.21226 -20.73672 -19.73552 -18.92519 -17.94306 -17.61158 -17.20797 -16.93672 -16.70294 -16.55584 -16.12850 -15.75674 -15.42276 -15.35529 -15.14827 -14.63106 -14.55651 -14.33868 -14.20228 -14.01098 -13.64303 -13.44713 -13.36187 -13.16130 -13.03861 -12.95000 -12.80781 -12.63280 -12.44988 -12.39384 -12.32442 -11.99449 -11.86169 -11.67542 -11.42611 -10.97074 -10.83329 -10.79820 -10.61783 -10.35715 -9.91542 -9.76160 -9.26159 -8.02354 -5.31025 -0.37636 0.38867 0.70069 1.30554 1.36206 1.40472 1.61411 1.85149 2.45073 2.46615 2.77957 3.25176 3.31467 3.66885 3.73130 3.83125 4.02102 4.05366 4.15212 4.24125 4.30763 4.36117 4.37656 4.45176 4.48467 4.52723 4.54195 4.66944 4.74081 4.78217 4.80993 4.83059 4.93155 5.01589 5.09572 5.10182 5.24138 5.33984 5.40982 5.62870 5.70777 5.80735 6.07272 6.23093 6.73365 6.79366 7.11134 7.49796 7.90996 8.05422 9.19856 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009936 B = 0.003337 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.366415 B = 8387.600613 C = 9083.411598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.141 3.859 4 C 0.013 3.987 5 N -0.461 5.461 6 C 0.059 3.941 7 C -0.060 4.060 8 C 0.507 3.493 9 O -0.577 6.577 10 N -0.707 5.707 11 C 0.144 3.856 12 H 0.041 0.959 13 C -0.150 4.150 14 C -0.120 4.120 15 C 0.167 3.833 16 H 0.047 0.953 17 C -0.157 4.157 18 N -0.750 5.750 19 C -0.209 4.209 20 H 0.059 0.941 21 C -0.066 4.066 22 N -0.986 5.986 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.305 1.305 26 H -0.262 1.262 27 C -0.253 4.253 28 S 0.171 5.829 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.414 0.586 37 H 0.031 0.969 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.048 0.952 43 H 0.080 0.920 44 H 0.026 0.974 45 H 0.359 0.641 46 H 0.253 0.747 47 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 23.026 -3.476 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C 0.062 3.938 4 C -0.264 4.264 5 N -0.178 5.178 6 C -0.074 4.074 7 C -0.102 4.102 8 C 0.294 3.706 9 O -0.456 6.456 10 N -0.360 5.360 11 C 0.039 3.961 12 H 0.059 0.941 13 C -0.208 4.208 14 C -0.158 4.158 15 C 0.060 3.940 16 H 0.066 0.934 17 C -0.216 4.216 18 N -0.394 5.394 19 C -0.341 4.341 20 H 0.077 0.923 21 C -0.257 4.257 22 N -0.638 5.638 23 Si 0.771 3.229 24 H -0.198 1.198 25 H -0.233 1.233 26 H -0.187 1.187 27 C -0.392 4.392 28 S 0.426 5.574 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.045 0.955 45 H 0.192 0.808 46 H 0.062 0.938 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.650 22.435 -2.546 24.555 hybrid contribution -0.054 -1.139 -0.656 1.315 sum -9.704 21.297 -3.202 23.622 Atomic orbital electron populations 1.22986 0.78250 1.03938 1.01718 1.87978 1.22449 1.27719 1.95751 1.20945 0.83478 0.85635 1.03786 1.26978 1.01558 1.06067 0.91843 1.65933 1.05338 1.13752 1.32733 1.19931 0.89978 1.02949 0.94533 1.20341 0.98356 0.98907 0.92581 1.20915 0.82594 0.85419 0.81688 1.90743 1.29534 1.51445 1.73834 1.45792 1.31529 1.33947 1.24758 1.20817 0.95823 0.88700 0.90774 0.94107 1.22071 0.97844 1.02403 0.98515 1.22130 0.94134 1.02102 0.97411 1.20527 0.92448 0.87334 0.93723 0.93448 1.22283 0.98109 1.01571 0.99679 1.42879 1.46668 1.30775 1.19039 1.18989 1.15339 1.05868 0.93855 0.92333 1.25339 1.02478 1.00263 0.97576 1.69859 1.48156 1.27499 1.18254 0.85581 0.80002 0.79279 0.77994 1.19849 1.23282 1.18747 1.27304 1.05134 1.11165 0.95647 1.83533 0.96892 1.65860 1.11093 0.89202 0.91357 0.92758 0.87773 0.89878 0.84665 0.84226 0.74848 0.95005 0.89738 0.91238 0.90066 0.86878 0.93242 0.90103 0.95461 0.80790 0.93799 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.73 10.69 -148.98 -1.59 -13.32 16 3 C 0.14 3.19 6.51 71.23 0.46 3.66 16 4 C 0.01 0.38 7.02 88.52 0.62 1.00 16 5 N -0.46 -15.40 9.68 -179.41 -1.74 -17.14 16 6 C 0.06 1.75 5.64 41.52 0.23 1.98 16 7 C -0.06 -1.44 6.19 29.10 0.18 -1.26 16 8 C 0.51 17.11 7.76 87.66 0.68 17.79 16 9 O -0.58 -26.82 15.11 -3.01 -0.05 -26.86 16 10 N -0.71 -19.23 4.45 -442.54 -1.97 -21.20 16 11 C 0.14 4.41 2.52 44.99 0.11 4.52 16 12 H 0.04 1.75 7.06 -2.39 -0.02 1.73 16 13 C -0.15 -3.86 9.48 71.98 0.68 -3.17 16 14 C -0.12 -3.05 4.29 30.59 0.13 -2.92 16 15 C 0.17 5.75 2.84 44.99 0.13 5.87 16 16 H 0.05 1.70 7.56 -2.39 -0.02 1.68 16 17 C -0.16 -4.79 9.49 71.98 0.68 -4.10 16 18 N -0.75 -35.09 4.30 -322.94 -1.39 -36.48 16 19 C -0.21 -12.17 10.41 84.03 0.87 -11.29 16 20 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 22 N -0.99 -66.10 13.97 21.65 0.30 -65.79 16 23 Si 0.94 49.39 27.74 68.60 1.90 51.29 16 24 H -0.27 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.31 -16.57 7.11 99.48 0.71 -15.86 16 26 H -0.26 -12.94 6.52 99.48 0.65 -12.29 16 27 C -0.25 -6.44 11.07 66.78 0.74 -5.70 16 28 S 0.17 4.06 23.18 -56.49 -1.31 2.75 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.14 2.50 8.03 -2.39 -0.02 2.48 16 35 H 0.14 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.41 7.62 8.60 -92.71 -0.80 6.82 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.36 16.80 5.66 -92.70 -0.52 16.28 16 46 H 0.25 16.37 8.31 -92.70 -0.77 15.60 16 47 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -91.19 404.89 1.01 -90.18 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -0.40 Total: 32.07 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 7.25 Total: 4.50 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -4.79 Total: -140.62 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.64 Total: -40.19 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.90 Total: 51.29 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.75 kcal Total: -91.19 1.01 -90.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.780 kcal (2) G-P(sol) polarization free energy of solvation -91.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds