Wall clock time and date at job start Wed Apr 1 2020 00:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99971 * 2 1 4 4 C 1.50703 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.29020 * 124.91585 * 89.99525 * 4 3 2 6 6 C 1.31788 * 117.12635 * 179.97438 * 5 4 3 7 7 C 1.50697 * 122.75167 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47331 * 305.03162 * 7 6 5 9 9 O 1.21284 * 120.00180 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99979 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47123 * 35.00778 * 11 10 8 13 13 C 1.53002 * 109.47520 * 275.00457 * 11 10 8 14 14 C 1.53003 * 109.47333 * 155.00547 * 11 10 8 15 15 C 1.53004 * 109.46807 * 295.00361 * 14 11 10 16 16 H 1.08995 * 109.47216 * 304.99653 * 15 14 11 17 17 C 1.52999 * 109.47083 * 184.99648 * 15 14 11 18 18 N 1.46498 * 109.47065 * 64.99542 * 15 14 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 C 1.33638 * 114.49854 * 0.24207 * 6 5 4 28 28 S 1.70978 * 124.91572 * 270.00069 * 4 3 2 29 29 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47524 * 300.00366 * 1 2 3 31 31 H 1.08999 * 109.46858 * 60.00331 * 1 2 3 32 32 H 1.09003 * 109.47242 * 60.00023 * 3 2 1 33 33 H 1.08997 * 109.46914 * 299.99528 * 3 2 1 34 34 H 1.08998 * 109.47375 * 185.02913 * 7 6 5 35 35 H 1.09004 * 109.46545 * 65.03111 * 7 6 5 36 36 H 0.96999 * 119.99718 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.47185 * 300.00284 * 13 11 10 38 38 H 1.09004 * 109.46882 * 60.00056 * 13 11 10 39 39 H 1.09000 * 109.47436 * 180.02562 * 13 11 10 40 40 H 1.08993 * 109.47316 * 175.00453 * 14 11 10 41 41 H 1.08998 * 109.46869 * 54.99922 * 14 11 10 42 42 H 1.08996 * 109.47245 * 179.97438 * 17 15 14 43 43 H 1.08995 * 109.47098 * 300.00077 * 17 15 14 44 44 H 1.09003 * 109.47054 * 59.99725 * 17 15 14 45 45 H 0.97001 * 120.00384 * 25.00562 * 18 15 14 46 46 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 47 47 H 1.07994 * 126.03929 * 179.76120 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2491 1.1279 -1.0570 6 6 5.5507 1.0253 -0.8778 7 6 6.5276 0.9472 -2.0226 8 6 6.1441 -0.1904 -2.9336 9 8 5.1728 -0.8705 -2.6786 10 7 6.8799 -0.4514 -4.0322 11 6 6.5074 -1.5576 -4.9174 12 1 5.4214 -1.6451 -4.9525 13 6 7.1070 -2.8608 -4.3854 14 6 7.0429 -1.2872 -6.3249 15 6 6.3499 -0.0529 -6.9057 16 1 5.2696 -0.1929 -6.8713 17 6 6.7926 0.1450 -8.3568 18 7 6.7147 1.1276 -6.1186 19 6 5.8839 2.2159 -6.0915 20 1 4.9576 2.2021 -6.6467 21 6 6.2322 3.3367 -5.3503 22 7 5.4335 4.3824 -5.3238 23 14 7.8346 3.3607 -4.3905 24 1 8.9189 3.8991 -5.2506 25 1 7.6803 4.2225 -3.1911 26 1 8.1786 1.9797 -3.9667 27 6 5.9329 0.9907 0.4023 28 16 4.4875 1.1094 1.4031 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 7.5314 0.7780 -1.6329 35 1 6.5078 1.8828 -2.5816 36 1 7.6565 0.0927 -4.2363 37 1 8.1929 -2.7734 -4.3503 38 1 6.7254 -3.0536 -3.3827 39 1 6.8302 -3.6838 -5.0443 40 1 6.8434 -2.1491 -6.9614 41 1 8.1176 -1.1117 -6.2772 42 1 6.2986 1.0240 -8.7708 43 1 7.8729 0.2849 -8.3913 44 1 6.5212 -0.7334 -8.9425 45 1 7.5466 1.1400 -5.6200 46 1 5.6767 5.1656 -4.8055 47 1 6.9483 0.9062 0.7602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135894137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:33 Heat of formation + Delta-G solvation = -14.013754 kcal Electronic energy + Delta-G solvation = -28739.540846 eV Core-core repulsion = 24857.464771 eV Total energy + Delta-G solvation = -3882.076075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10339 -38.99632 -37.78419 -36.80258 -34.22843 -32.61606 -32.13722 -30.88713 -29.25901 -28.68023 -27.60434 -26.37216 -26.02085 -23.33281 -22.95371 -21.29441 -20.47913 -19.75775 -19.47117 -17.75368 -17.53843 -16.66505 -16.50686 -15.87363 -15.86039 -15.66022 -14.81662 -14.66585 -14.45794 -14.15906 -13.91108 -13.51759 -13.34203 -13.23603 -12.93161 -12.71557 -12.54843 -12.36943 -12.20995 -12.06557 -12.02077 -11.82987 -11.71870 -11.48538 -11.31208 -11.01685 -10.83208 -10.72992 -10.49126 -10.23240 -9.96483 -9.82726 -9.58559 -9.37786 -9.33096 -9.16634 -8.97558 -8.60896 -8.41541 -7.22659 -5.74963 -3.08621 0.77313 1.46820 1.81471 2.87233 3.08830 3.22980 3.32111 3.37038 3.74552 3.84111 4.34383 4.52009 4.85671 5.01425 5.06604 5.17965 5.22587 5.23423 5.29201 5.32688 5.38087 5.45835 5.47516 5.54602 5.57942 5.59715 5.70089 5.79361 5.90710 5.92569 5.97272 6.08621 6.18145 6.25411 6.31819 6.38443 6.44133 6.53304 6.82528 6.98280 7.01148 7.10713 7.99930 8.01323 8.09675 8.43269 8.86586 9.20616 9.92269 10.12358 11.44298 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004037 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.231647 B = 6933.393543 C = 7574.148363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.142 3.858 4 C 0.047 3.953 5 N -0.411 5.411 6 C 0.101 3.899 7 C -0.076 4.076 8 C 0.532 3.468 9 O -0.531 6.531 10 N -0.708 5.708 11 C 0.150 3.850 12 H 0.086 0.914 13 C -0.161 4.161 14 C -0.135 4.135 15 C 0.175 3.825 16 H 0.056 0.944 17 C -0.164 4.164 18 N -0.741 5.741 19 C -0.229 4.229 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.932 5.932 23 Si 0.876 3.124 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.281 1.281 27 C -0.257 4.257 28 S 0.114 5.886 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.396 0.604 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.353 0.647 46 H 0.257 0.743 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -9.830 11.096 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C 0.062 3.938 4 C -0.233 4.233 5 N -0.126 5.126 6 C -0.032 4.032 7 C -0.119 4.119 8 C 0.317 3.683 9 O -0.407 6.407 10 N -0.362 5.362 11 C 0.045 3.955 12 H 0.105 0.895 13 C -0.220 4.220 14 C -0.174 4.174 15 C 0.066 3.934 16 H 0.074 0.926 17 C -0.224 4.224 18 N -0.385 5.385 19 C -0.359 4.359 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.709 3.291 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.208 1.208 27 C -0.396 4.396 28 S 0.369 5.631 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.233 0.767 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.187 0.813 46 H 0.068 0.932 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.943 -10.285 11.826 15.701 hybrid contribution 2.078 0.771 -0.192 2.225 sum 1.135 -9.514 11.634 15.071 Atomic orbital electron populations 1.22776 0.80394 1.03061 1.00192 1.87987 1.19954 1.26407 1.95472 1.20765 0.84788 0.85917 1.02320 1.26480 1.00191 1.05816 0.90774 1.65951 1.04314 1.11458 1.30853 1.19593 0.89968 1.00588 0.93033 1.20421 0.96840 1.00911 0.93687 1.19879 0.82775 0.84230 0.81419 1.90686 1.26433 1.50184 1.73398 1.46067 1.31564 1.33813 1.24735 1.20815 1.00753 0.85262 0.88678 0.89541 1.22200 1.00607 0.97428 1.01734 1.22238 1.00441 0.99518 0.95202 1.20241 0.97749 0.85626 0.89762 0.92556 1.22396 1.00811 1.00541 0.98661 1.42810 1.23650 1.14784 1.57257 1.19060 1.01473 0.90845 1.24505 0.89296 1.24618 0.97573 0.96425 1.00525 1.69669 1.37172 1.05472 1.45714 0.86860 0.85452 0.76362 0.80466 1.21462 1.21637 1.20829 1.26794 1.03199 1.13934 0.95674 1.83604 0.98240 1.68176 1.13105 0.89349 0.94012 0.93498 0.91167 0.89739 0.88040 0.86715 0.76664 0.92984 0.92426 0.92056 0.90446 0.91956 0.92399 0.93752 0.94257 0.81304 0.93226 0.80513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.68 10.69 -35.23 -0.38 -6.06 16 3 C 0.14 2.00 6.51 36.01 0.23 2.23 16 4 C 0.05 0.79 7.02 -13.46 -0.09 0.69 16 5 N -0.41 -8.44 9.68 -8.06 -0.08 -8.52 16 6 C 0.10 1.88 5.64 -84.22 -0.47 1.41 16 7 C -0.08 -1.40 5.77 -29.04 -0.17 -1.57 16 8 C 0.53 10.67 7.76 -10.99 -0.09 10.58 16 9 O -0.53 -12.26 15.11 5.55 0.08 -12.18 16 10 N -0.71 -12.56 3.80 -53.81 -0.20 -12.76 16 11 C 0.15 2.40 2.57 -67.93 -0.17 2.22 16 12 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 13 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 14 C -0.14 -1.96 4.43 -26.73 -0.12 -2.08 16 15 C 0.18 3.21 2.89 -67.93 -0.20 3.02 16 16 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 17 C -0.16 -2.75 9.49 37.16 0.35 -2.40 16 18 N -0.74 -16.21 3.65 -53.43 -0.19 -16.41 16 19 C -0.23 -6.20 10.41 -15.06 -0.16 -6.36 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 23 Si 0.88 20.51 25.17 -169.99 -4.28 16.23 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -5.52 4.62 56.52 0.26 -5.26 16 27 C -0.26 -3.79 11.07 29.12 0.32 -3.47 16 28 S 0.11 1.54 23.18 -107.50 -2.49 -0.95 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.44 8.03 -51.93 -0.42 1.03 16 35 H 0.12 2.39 5.04 -51.93 -0.26 2.13 16 36 H 0.40 6.79 5.13 -40.82 -0.21 6.58 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.35 7.35 3.77 -40.82 -0.15 7.20 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -35.34 391.53 -7.53 -42.87 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -7.47 Total: 16.00 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.81 Total: 3.94 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 0.30 Total: -65.75 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.29 Total: -18.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.28 Total: 16.23 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.49 Total: -0.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.34 -7.53 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.853 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds