Wall clock time and date at job start Wed Apr 1 2020 00:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99971 * 2 1 4 4 C 1.50703 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.29020 * 124.91585 * 89.99525 * 4 3 2 6 6 C 1.31788 * 117.12635 * 179.97438 * 5 4 3 7 7 C 1.50697 * 122.75167 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47331 * 305.03162 * 7 6 5 9 9 O 1.21284 * 120.00180 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99979 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47123 * 35.00778 * 11 10 8 13 13 C 1.53002 * 109.47520 * 275.00457 * 11 10 8 14 14 C 1.53003 * 109.47333 * 155.00547 * 11 10 8 15 15 C 1.53004 * 109.46807 * 295.00361 * 14 11 10 16 16 H 1.08995 * 109.47216 * 304.99653 * 15 14 11 17 17 C 1.52999 * 109.47083 * 184.99648 * 15 14 11 18 18 N 1.46498 * 109.47065 * 64.99542 * 15 14 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 C 1.33638 * 114.49854 * 0.24207 * 6 5 4 28 28 S 1.70978 * 124.91572 * 270.00069 * 4 3 2 29 29 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47524 * 300.00366 * 1 2 3 31 31 H 1.08999 * 109.46858 * 60.00331 * 1 2 3 32 32 H 1.09003 * 109.47242 * 60.00023 * 3 2 1 33 33 H 1.08997 * 109.46914 * 299.99528 * 3 2 1 34 34 H 1.08998 * 109.47375 * 185.02913 * 7 6 5 35 35 H 1.09004 * 109.46545 * 65.03111 * 7 6 5 36 36 H 0.96999 * 119.99718 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.47185 * 300.00284 * 13 11 10 38 38 H 1.09004 * 109.46882 * 60.00056 * 13 11 10 39 39 H 1.09000 * 109.47436 * 180.02562 * 13 11 10 40 40 H 1.08993 * 109.47316 * 175.00453 * 14 11 10 41 41 H 1.08998 * 109.46869 * 54.99922 * 14 11 10 42 42 H 1.08996 * 109.47245 * 179.97438 * 17 15 14 43 43 H 1.08995 * 109.47098 * 300.00077 * 17 15 14 44 44 H 1.09003 * 109.47054 * 59.99725 * 17 15 14 45 45 H 0.97001 * 120.00384 * 25.00562 * 18 15 14 46 46 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 47 47 H 1.07994 * 126.03929 * 179.76120 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2491 1.1279 -1.0570 6 6 5.5507 1.0253 -0.8778 7 6 6.5276 0.9472 -2.0226 8 6 6.1441 -0.1904 -2.9336 9 8 5.1728 -0.8705 -2.6786 10 7 6.8799 -0.4514 -4.0322 11 6 6.5074 -1.5576 -4.9174 12 1 5.4214 -1.6451 -4.9525 13 6 7.1070 -2.8608 -4.3854 14 6 7.0429 -1.2872 -6.3249 15 6 6.3499 -0.0529 -6.9057 16 1 5.2696 -0.1929 -6.8713 17 6 6.7926 0.1450 -8.3568 18 7 6.7147 1.1276 -6.1186 19 6 5.8839 2.2159 -6.0915 20 1 4.9576 2.2021 -6.6467 21 6 6.2322 3.3367 -5.3503 22 7 5.4335 4.3824 -5.3238 23 14 7.8346 3.3607 -4.3905 24 1 8.9189 3.8991 -5.2506 25 1 7.6803 4.2225 -3.1911 26 1 8.1786 1.9797 -3.9667 27 6 5.9329 0.9907 0.4023 28 16 4.4875 1.1094 1.4031 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 7.5314 0.7780 -1.6329 35 1 6.5078 1.8828 -2.5816 36 1 7.6565 0.0927 -4.2363 37 1 8.1929 -2.7734 -4.3503 38 1 6.7254 -3.0536 -3.3827 39 1 6.8302 -3.6838 -5.0443 40 1 6.8434 -2.1491 -6.9614 41 1 8.1176 -1.1117 -6.2772 42 1 6.2986 1.0240 -8.7708 43 1 7.8729 0.2849 -8.3913 44 1 6.5212 -0.7334 -8.9425 45 1 7.5466 1.1400 -5.6200 46 1 5.6767 5.1656 -4.8055 47 1 6.9483 0.9062 0.7602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135894137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:33 Heat of formation + Delta-G solvation = -41.207799 kcal Electronic energy + Delta-G solvation = -28740.720069 eV Core-core repulsion = 24857.464771 eV Total energy + Delta-G solvation = -3883.255297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42277 -40.36394 -38.84818 -38.33646 -35.86106 -34.19525 -33.71941 -32.40756 -30.89450 -29.90153 -28.77863 -27.61370 -26.96354 -25.32028 -24.16805 -22.62643 -21.98930 -21.20936 -20.74776 -19.56843 -18.97888 -18.05059 -17.61252 -17.24079 -16.99976 -16.68677 -16.54560 -16.11621 -16.06151 -15.39001 -15.29343 -14.98440 -14.72826 -14.56658 -14.37977 -14.12452 -14.07923 -13.73053 -13.43205 -13.38020 -13.18523 -13.10458 -12.88055 -12.75556 -12.56017 -12.41755 -12.38266 -12.30537 -12.02209 -11.79691 -11.61486 -11.45865 -10.96295 -10.83367 -10.80722 -10.55711 -10.38648 -9.92718 -9.76595 -9.18667 -7.95526 -5.27084 -0.38763 0.36878 0.64599 1.20875 1.39284 1.46360 1.63018 1.78277 2.44974 2.52221 2.73220 3.25396 3.36506 3.61838 3.71702 3.80243 3.95419 4.04670 4.09305 4.16851 4.23159 4.33276 4.36032 4.38399 4.47352 4.52282 4.54175 4.64630 4.67051 4.79669 4.80285 4.84408 4.90102 5.01234 5.04739 5.07783 5.15046 5.34857 5.37787 5.59169 5.73511 5.83198 6.03502 6.26186 6.64416 6.84837 7.14315 7.40348 7.88178 8.09851 9.27350 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004037 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.231647 B = 6933.393543 C = 7574.148363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.140 3.860 4 C 0.010 3.990 5 N -0.474 5.474 6 C 0.057 3.943 7 C -0.077 4.077 8 C 0.523 3.477 9 O -0.571 6.571 10 N -0.702 5.702 11 C 0.144 3.856 12 H 0.048 0.952 13 C -0.148 4.148 14 C -0.120 4.120 15 C 0.166 3.834 16 H 0.024 0.976 17 C -0.155 4.155 18 N -0.737 5.737 19 C -0.215 4.215 20 H 0.039 0.961 21 C -0.068 4.068 22 N -0.990 5.990 23 Si 0.948 3.052 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.228 1.228 27 C -0.246 4.246 28 S 0.199 5.801 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.400 0.600 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.023 0.977 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.363 0.637 46 H 0.252 0.748 47 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -12.050 12.969 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.061 3.939 4 C -0.268 4.268 5 N -0.190 5.190 6 C -0.075 4.075 7 C -0.119 4.119 8 C 0.309 3.691 9 O -0.450 6.450 10 N -0.356 5.356 11 C 0.040 3.960 12 H 0.067 0.933 13 C -0.207 4.207 14 C -0.158 4.158 15 C 0.058 3.942 16 H 0.042 0.958 17 C -0.214 4.214 18 N -0.383 5.383 19 C -0.346 4.346 20 H 0.057 0.943 21 C -0.259 4.259 22 N -0.641 5.641 23 Si 0.776 3.224 24 H -0.212 1.212 25 H -0.227 1.227 26 H -0.152 1.152 27 C -0.385 4.385 28 S 0.454 5.546 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.238 0.762 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.198 0.802 46 H 0.061 0.939 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.351 -12.577 13.663 18.719 hybrid contribution 0.885 1.416 -0.795 1.849 sum 3.236 -11.161 12.868 17.338 Atomic orbital electron populations 1.23009 0.78306 1.04256 1.01440 1.87927 1.22362 1.27052 1.95708 1.20904 0.83904 0.85877 1.03245 1.26936 1.01545 1.06182 0.92113 1.65922 1.05924 1.13482 1.33644 1.19739 0.89678 1.03624 0.94493 1.20486 0.99395 0.98424 0.93572 1.20327 0.82342 0.84377 0.82034 1.90658 1.28087 1.51794 1.74446 1.46109 1.31160 1.34097 1.24226 1.20949 0.99006 0.86384 0.89682 0.93343 1.22075 1.01678 0.96109 1.00802 1.22165 1.01114 0.98354 0.94202 1.20469 0.96677 0.86152 0.90877 0.95801 1.22253 1.01297 1.00623 0.97271 1.42687 1.23145 1.14390 1.58033 1.18866 1.00262 0.92575 1.22907 0.94327 1.25496 1.02268 0.95785 1.02307 1.69918 1.40235 1.06494 1.47446 0.85669 0.79631 0.79010 0.78061 1.21248 1.22652 1.15193 1.27326 1.05689 1.10701 0.94769 1.83176 0.95840 1.65792 1.09817 0.88239 0.91227 0.93749 0.87386 0.91613 0.83636 0.89536 0.76177 0.90593 0.94530 0.89760 0.86927 0.89339 0.95731 0.92206 0.90881 0.80170 0.93915 0.76583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -12.54 10.69 -148.98 -1.59 -14.14 16 3 C 0.14 4.05 6.51 71.24 0.46 4.51 16 4 C 0.01 0.34 7.02 88.52 0.62 0.96 16 5 N -0.47 -20.15 9.68 -179.40 -1.74 -21.88 16 6 C 0.06 2.11 5.64 41.52 0.23 2.35 16 7 C -0.08 -2.76 5.77 29.10 0.17 -2.59 16 8 C 0.52 21.02 7.76 87.66 0.68 21.70 16 9 O -0.57 -27.33 15.11 -3.04 -0.05 -27.38 16 10 N -0.70 -23.99 3.80 -442.53 -1.68 -25.67 16 11 C 0.14 4.41 2.57 44.99 0.12 4.52 16 12 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 13 C -0.15 -3.50 9.48 71.98 0.68 -2.82 16 14 C -0.12 -3.10 4.43 30.60 0.14 -2.96 16 15 C 0.17 5.99 2.89 44.99 0.13 6.12 16 16 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 17 C -0.15 -4.95 9.49 71.98 0.68 -4.26 16 18 N -0.74 -32.25 3.65 -322.94 -1.18 -33.43 16 19 C -0.21 -12.23 10.41 84.03 0.87 -11.36 16 20 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 21 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 22 N -0.99 -64.86 13.97 21.65 0.30 -64.56 16 23 Si 0.95 42.81 25.17 68.60 1.73 44.54 16 24 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.23 -8.03 4.62 99.48 0.46 -7.57 16 27 C -0.25 -6.63 11.07 66.78 0.74 -5.90 16 28 S 0.20 4.91 23.18 -56.49 -1.31 3.60 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.15 3.66 8.03 -2.39 -0.02 3.64 16 35 H 0.09 3.59 5.04 -2.38 -0.01 3.57 16 36 H 0.40 12.55 5.13 -92.71 -0.48 12.07 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.36 14.38 3.77 -92.71 -0.35 14.03 16 46 H 0.25 15.86 8.31 -92.70 -0.77 15.09 16 47 H 0.22 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -87.17 391.53 1.64 -85.53 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: -0.09 Total: 44.88 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 7.24 Total: 8.52 kcal Atomic # 7 Polarization: -141.25 SS G_CDS: -4.29 Total: -145.55 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.64 Total: -41.52 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.73 Total: 44.54 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -1.31 Total: 3.60 kcal Total: -87.17 1.64 -85.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135894137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.320 kcal (2) G-P(sol) polarization free energy of solvation -87.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds