Wall clock time and date at job start Wed Apr 1 2020 00:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34768 * 119.99911 * 2 1 4 4 O 1.21275 * 120.00223 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99580 * 179.72317 * 3 2 1 6 6 H 1.09001 * 109.47074 * 300.27250 * 5 3 2 7 7 C 1.52996 * 109.47207 * 60.27413 * 5 3 2 8 8 N 1.46902 * 109.46920 * 180.27418 * 5 3 2 9 9 C 1.47954 * 111.00081 * 188.54367 * 8 5 3 10 10 C 1.55147 * 104.97781 * 213.87110 * 9 8 5 11 11 C 1.53849 * 101.48534 * 35.70182 * 10 9 8 12 12 C 1.52589 * 115.89540 * 95.42478 * 11 10 9 13 13 N 1.47857 * 85.65766 * 94.95151 * 12 11 10 14 14 C 1.34777 * 134.35946 * 203.63506 * 13 12 11 15 15 O 1.21280 * 119.99529 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00244 * 0.02562 * 14 13 12 17 17 S 1.80997 * 109.47204 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00319 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99511 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00160 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47148 * 59.99254 * 22 20 18 24 24 H 1.48496 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46710 * 300.00045 * 22 20 18 26 26 C 1.47847 * 91.27103 * 23.63992 * 13 12 11 27 27 C 1.47781 * 110.99956 * 67.72576 * 8 5 3 28 28 H 1.09007 * 109.46497 * 60.00646 * 1 2 3 29 29 H 1.09004 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47431 * 300.00597 * 1 2 3 31 31 H 0.97003 * 119.99751 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47000 * 56.65728 * 7 5 3 33 33 H 1.09006 * 109.47297 * 176.65705 * 7 5 3 34 34 H 1.09005 * 109.47197 * 296.65633 * 7 5 3 35 35 H 1.09006 * 110.34267 * 332.74284 * 9 8 5 36 36 H 1.08997 * 110.34402 * 94.99252 * 9 8 5 37 37 H 1.09009 * 111.02117 * 277.65591 * 10 9 8 38 38 H 1.08996 * 111.02949 * 153.75547 * 10 9 8 39 39 H 1.08992 * 113.84445 * 209.13115 * 12 11 10 40 40 H 1.08998 * 113.84174 * 340.76630 * 12 11 10 41 41 H 1.08997 * 109.47123 * 299.99727 * 16 14 13 42 42 H 1.09006 * 109.47025 * 59.99661 * 16 14 13 43 43 H 0.97001 * 119.99386 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.83594 * 222.17051 * 26 13 12 45 45 H 1.08997 * 113.84348 * 90.54250 * 26 13 12 46 46 H 1.09007 * 109.99034 * 243.54198 * 27 8 5 47 47 H 1.09001 * 109.99170 * 4.86131 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6459 1.1671 0.0063 6 1 4.0055 0.6511 0.8966 7 6 4.1611 0.4488 -1.2425 8 7 4.1356 2.5520 0.0116 9 6 5.6010 2.5971 -0.1873 10 6 6.0829 3.8082 0.6542 11 6 5.1351 3.7370 1.8640 12 6 5.6729 3.0042 3.0897 13 7 6.0804 4.3415 3.5710 14 6 7.0127 4.7880 4.4359 15 8 7.1269 5.9774 4.6438 16 6 7.9139 3.8094 5.1438 17 16 9.0490 4.7102 6.2284 18 6 9.9564 3.3619 6.9093 19 1 9.7240 2.3499 6.6123 20 6 10.9697 3.6005 7.8273 21 7 11.2532 4.8341 8.1889 22 14 11.9321 2.1712 8.5486 23 1 12.6066 1.4265 7.4551 24 1 12.9513 2.6888 9.4965 25 1 11.0036 1.2619 9.2673 26 6 5.0578 4.9937 2.7256 27 6 3.8138 3.2226 1.2886 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.9500 -0.8401 0.0004 32 1 3.7534 0.9290 -2.1320 33 1 5.2497 0.5004 -1.2683 34 1 3.8474 -0.5948 -1.2168 35 1 6.0610 1.6774 0.1744 36 1 5.8359 2.7502 -1.2406 37 1 5.9498 4.7419 0.1077 38 1 7.1207 3.6820 0.9626 39 1 4.8992 2.5345 3.6968 40 1 6.5095 2.3398 2.8738 41 1 7.3101 3.1238 5.7383 42 1 8.4864 3.2447 4.4079 43 1 11.9616 5.0007 8.8302 44 1 5.4106 5.8946 2.2235 45 1 4.0969 5.1292 3.2219 46 1 3.1351 4.0569 1.1107 47 1 3.3585 2.5119 1.9783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147031411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:55 Heat of formation + Delta-G solvation = -19.315423 kcal Electronic energy + Delta-G solvation = -27444.619505 eV Core-core repulsion = 23562.313532 eV Total energy + Delta-G solvation = -3882.305973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25909 -40.05749 -38.35075 -36.77766 -34.99069 -33.13724 -32.43799 -30.42479 -29.76089 -28.47562 -27.28870 -26.44327 -25.56374 -24.90171 -24.26626 -21.56156 -20.42179 -19.67426 -18.75134 -17.77573 -17.63231 -16.90815 -16.48004 -16.30651 -15.80567 -15.63466 -15.24898 -14.97994 -14.81249 -14.46613 -14.14526 -13.94645 -13.72249 -13.42770 -13.22349 -13.07056 -12.79327 -12.75564 -12.71952 -12.56425 -12.53114 -12.08811 -11.96281 -11.87945 -11.56538 -11.33612 -11.14366 -11.05034 -11.04718 -10.77711 -10.66846 -10.09803 -9.83595 -9.54841 -9.36178 -9.06968 -8.67037 -8.51759 -8.24434 -6.51103 -6.22192 -3.93109 2.29712 2.67728 2.75772 3.08270 3.22107 3.22767 3.27665 3.53317 3.57235 3.97543 4.14238 4.19442 4.34367 4.45598 4.54204 4.61407 4.66829 4.78783 4.91091 4.93679 5.04880 5.07680 5.12585 5.16596 5.24165 5.29393 5.30013 5.35972 5.40503 5.48239 5.51711 5.59539 5.61671 5.68481 5.79458 5.85729 5.87349 5.94394 5.98342 6.06423 6.13414 6.55680 6.56746 7.06059 7.57980 7.85491 7.87218 8.33992 8.57501 9.22571 10.85180 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.002133 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.668680 B =13125.973151 C =13735.857228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.740 5.740 3 C 0.516 3.484 4 O -0.516 6.516 5 C 0.058 3.942 6 H 0.069 0.931 7 C -0.146 4.146 8 N -0.507 5.507 9 C 0.045 3.955 10 C -0.103 4.103 11 C -0.120 4.120 12 C 0.116 3.884 13 N -0.648 5.648 14 C 0.555 3.445 15 O -0.515 6.515 16 C -0.144 4.144 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.127 3.873 27 C 0.070 3.930 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.269 0.731 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.047 -14.022 -20.838 31.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.393 5.393 3 C 0.301 3.699 4 O -0.389 6.389 5 C -0.054 4.054 6 H 0.087 0.913 7 C -0.204 4.204 8 N -0.231 5.231 9 C -0.082 4.082 10 C -0.141 4.141 11 C -0.122 4.122 12 C -0.008 4.008 13 N -0.387 5.387 14 C 0.344 3.656 15 O -0.389 6.389 16 C -0.295 4.295 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.004 3.996 27 C -0.058 4.058 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.304 -11.008 -20.669 30.348 hybrid contribution 0.975 -3.321 1.028 3.611 sum -18.329 -14.329 -19.641 30.447 Atomic orbital electron populations 1.21519 0.79469 1.02162 1.02399 1.45812 1.07796 1.08709 1.76994 1.20535 0.89721 0.83683 0.75964 1.90722 1.69899 1.31051 1.47270 1.21789 0.92093 0.91523 0.99997 0.91323 1.21882 1.02399 0.99361 0.96734 1.63542 1.12917 1.12726 1.33943 1.23155 0.86403 0.97718 1.00973 1.22371 0.98766 0.99073 0.93866 1.22807 0.96905 0.97538 0.94903 1.23055 0.98792 0.87319 0.91592 1.50112 1.34757 1.08995 1.44833 1.20031 0.79392 0.89329 0.76836 1.90713 1.69480 1.16956 1.61772 1.23465 1.01297 1.01878 1.02845 1.85415 1.37390 1.10823 1.49698 1.22809 1.21742 0.93764 1.30076 0.91049 1.24997 0.96363 0.96586 0.95655 1.70012 1.29948 1.18969 1.31288 0.86219 0.79220 0.81218 0.78801 1.19947 1.20775 1.19955 1.22850 0.91726 0.96343 0.88698 1.22537 0.95287 0.99413 0.88544 0.92219 0.90709 0.92223 0.76626 0.91108 0.90847 0.91701 0.93064 0.89670 0.89685 0.89977 0.89892 0.89981 0.89515 0.89499 0.92107 0.89746 0.89833 0.88944 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.70 59.85 0.64 1.07 16 2 N -0.74 -3.95 5.62 -67.07 -0.38 -4.33 16 3 C 0.52 4.38 6.75 -10.99 -0.07 4.31 16 4 O -0.52 -6.56 15.43 5.56 0.09 -6.47 16 5 C 0.06 0.39 2.09 -68.86 -0.14 0.25 16 6 H 0.07 0.39 8.02 -51.93 -0.42 -0.03 16 7 C -0.15 -0.68 8.86 37.16 0.33 -0.35 16 8 N -0.51 -4.33 4.76 -224.96 -1.07 -5.40 16 9 C 0.04 0.32 5.28 -2.11 -0.01 0.31 16 10 C -0.10 -0.90 6.41 -25.15 -0.16 -1.06 16 11 C -0.12 -1.13 0.97 -154.70 -0.15 -1.28 16 12 C 0.12 1.21 7.85 -3.51 -0.03 1.19 16 13 N -0.65 -9.60 3.62 -185.58 -0.67 -10.27 16 14 C 0.55 11.12 8.07 -10.99 -0.09 11.03 16 15 O -0.52 -12.47 16.59 5.56 0.09 -12.38 16 16 C -0.14 -3.04 5.90 36.00 0.21 -2.83 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.13 1.51 8.15 -3.53 -0.03 1.48 16 27 C 0.07 0.64 5.02 -3.33 -0.02 0.63 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.35 8.14 -51.94 -0.42 -0.07 16 31 H 0.40 0.96 8.32 -40.82 -0.34 0.62 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.31 6.47 -51.93 -0.34 -0.03 16 34 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 35 H 0.05 0.32 7.17 -51.93 -0.37 -0.05 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.08 0.77 8.00 -51.93 -0.42 0.35 16 40 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 47 H 0.05 0.50 7.02 -51.93 -0.36 0.13 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -37.95 396.18 -9.47 -47.41 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.67 Total: -3.14 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 0.68 Total: 1.66 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -1.38 Total: -45.58 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.95 -9.47 -47.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147031411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.097 kcal (2) G-P(sol) polarization free energy of solvation -37.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds