Wall clock time and date at job start Wed Apr 1 2020 00:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34768 * 119.99911 * 2 1 4 4 O 1.21275 * 120.00223 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99580 * 179.72317 * 3 2 1 6 6 H 1.09001 * 109.47074 * 300.27250 * 5 3 2 7 7 C 1.52996 * 109.47207 * 60.27413 * 5 3 2 8 8 N 1.46902 * 109.46920 * 180.27418 * 5 3 2 9 9 C 1.47954 * 111.00081 * 188.54367 * 8 5 3 10 10 C 1.55147 * 104.97781 * 213.87110 * 9 8 5 11 11 C 1.53849 * 101.48534 * 35.70182 * 10 9 8 12 12 C 1.52589 * 115.89540 * 95.42478 * 11 10 9 13 13 N 1.47857 * 85.65766 * 94.95151 * 12 11 10 14 14 C 1.34777 * 134.35946 * 203.63506 * 13 12 11 15 15 O 1.21280 * 119.99529 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00244 * 0.02562 * 14 13 12 17 17 S 1.80997 * 109.47204 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00319 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99511 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00160 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47148 * 59.99254 * 22 20 18 24 24 H 1.48496 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46710 * 300.00045 * 22 20 18 26 26 C 1.47847 * 91.27103 * 23.63992 * 13 12 11 27 27 C 1.47781 * 110.99956 * 67.72576 * 8 5 3 28 28 H 1.09007 * 109.46497 * 60.00646 * 1 2 3 29 29 H 1.09004 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47431 * 300.00597 * 1 2 3 31 31 H 0.97003 * 119.99751 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47000 * 56.65728 * 7 5 3 33 33 H 1.09006 * 109.47297 * 176.65705 * 7 5 3 34 34 H 1.09005 * 109.47197 * 296.65633 * 7 5 3 35 35 H 1.09006 * 110.34267 * 332.74284 * 9 8 5 36 36 H 1.08997 * 110.34402 * 94.99252 * 9 8 5 37 37 H 1.09009 * 111.02117 * 277.65591 * 10 9 8 38 38 H 1.08996 * 111.02949 * 153.75547 * 10 9 8 39 39 H 1.08992 * 113.84445 * 209.13115 * 12 11 10 40 40 H 1.08998 * 113.84174 * 340.76630 * 12 11 10 41 41 H 1.08997 * 109.47123 * 299.99727 * 16 14 13 42 42 H 1.09006 * 109.47025 * 59.99661 * 16 14 13 43 43 H 0.97001 * 119.99386 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.83594 * 222.17051 * 26 13 12 45 45 H 1.08997 * 113.84348 * 90.54250 * 26 13 12 46 46 H 1.09007 * 109.99034 * 243.54198 * 27 8 5 47 47 H 1.09001 * 109.99170 * 4.86131 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6459 1.1671 0.0063 6 1 4.0055 0.6511 0.8966 7 6 4.1611 0.4488 -1.2425 8 7 4.1356 2.5520 0.0116 9 6 5.6010 2.5971 -0.1873 10 6 6.0829 3.8082 0.6542 11 6 5.1351 3.7370 1.8640 12 6 5.6729 3.0042 3.0897 13 7 6.0804 4.3415 3.5710 14 6 7.0127 4.7880 4.4359 15 8 7.1269 5.9774 4.6438 16 6 7.9139 3.8094 5.1438 17 16 9.0490 4.7102 6.2284 18 6 9.9564 3.3619 6.9093 19 1 9.7240 2.3499 6.6123 20 6 10.9697 3.6005 7.8273 21 7 11.2532 4.8341 8.1889 22 14 11.9321 2.1712 8.5486 23 1 12.6066 1.4265 7.4551 24 1 12.9513 2.6888 9.4965 25 1 11.0036 1.2619 9.2673 26 6 5.0578 4.9937 2.7256 27 6 3.8138 3.2226 1.2886 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.9500 -0.8401 0.0004 32 1 3.7534 0.9290 -2.1320 33 1 5.2497 0.5004 -1.2683 34 1 3.8474 -0.5948 -1.2168 35 1 6.0610 1.6774 0.1744 36 1 5.8359 2.7502 -1.2406 37 1 5.9498 4.7419 0.1077 38 1 7.1207 3.6820 0.9626 39 1 4.8992 2.5345 3.6968 40 1 6.5095 2.3398 2.8738 41 1 7.3101 3.1238 5.7383 42 1 8.4864 3.2447 4.4079 43 1 11.9616 5.0007 8.8302 44 1 5.4106 5.8946 2.2235 45 1 4.0969 5.1292 3.2219 46 1 3.1351 4.0569 1.1107 47 1 3.3585 2.5119 1.9783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147031411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:54 Heat of formation + Delta-G solvation = -49.037272 kcal Electronic energy + Delta-G solvation = -27445.908341 eV Core-core repulsion = 23562.313532 eV Total energy + Delta-G solvation = -3883.594809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14028 -40.83435 -39.59298 -37.75081 -35.57625 -34.60219 -33.86021 -31.79493 -30.39380 -29.59801 -27.82777 -27.67966 -27.36678 -25.93225 -24.79778 -22.17831 -21.05002 -20.89639 -19.86291 -19.45697 -18.27305 -17.99658 -17.40416 -17.22909 -16.98572 -16.88886 -16.51296 -16.05531 -15.89772 -15.68163 -15.38715 -14.98105 -14.68868 -14.41148 -14.29106 -13.92297 -13.74001 -13.71872 -13.53643 -13.37883 -13.18467 -13.12176 -13.08878 -12.87283 -12.73220 -12.62467 -12.51277 -12.21065 -12.13330 -11.94285 -11.76911 -11.49852 -11.14138 -10.90503 -10.74984 -10.31444 -10.07212 -9.80343 -9.22631 -8.70728 -8.35690 -6.15354 1.18819 1.41642 1.43574 1.52565 1.55235 1.69693 1.93245 2.20777 2.26114 2.96193 2.98174 3.11850 3.20185 3.43617 3.58493 3.82224 3.85411 3.93425 4.10882 4.18284 4.21625 4.32895 4.37862 4.41005 4.45727 4.46674 4.49538 4.55057 4.61133 4.64825 4.76854 4.79592 4.84214 4.92009 4.97325 4.99036 5.11109 5.15578 5.19010 5.29191 5.39427 5.49490 5.93422 6.01454 6.17992 6.54817 6.63626 7.04746 7.07538 7.34678 8.73404 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.002133 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.668680 B =13125.973151 C =13735.857228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.726 5.726 3 C 0.510 3.490 4 O -0.568 6.568 5 C 0.059 3.941 6 H 0.089 0.911 7 C -0.142 4.142 8 N -0.524 5.524 9 C 0.052 3.948 10 C -0.105 4.105 11 C -0.101 4.101 12 C 0.117 3.883 13 N -0.645 5.645 14 C 0.552 3.448 15 O -0.571 6.571 16 C -0.116 4.116 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.119 3.881 27 C 0.081 3.919 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.417 0.583 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.272 0.728 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.328 -18.233 -21.894 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.296 3.704 4 O -0.446 6.446 5 C -0.053 4.053 6 H 0.107 0.893 7 C -0.199 4.199 8 N -0.249 5.249 9 C -0.074 4.074 10 C -0.143 4.143 11 C -0.103 4.103 12 C -0.005 4.005 13 N -0.381 5.381 14 C 0.341 3.659 15 O -0.450 6.450 16 C -0.267 4.267 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.185 1.185 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.004 4.004 27 C -0.047 4.047 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.626 -15.312 -21.778 33.075 hybrid contribution 0.886 -2.043 1.215 2.537 sum -18.741 -17.356 -20.563 32.791 Atomic orbital electron populations 1.21605 0.79154 1.03987 1.01102 1.45750 1.08135 1.08726 1.75319 1.20975 0.90621 0.83661 0.75166 1.90704 1.70964 1.32936 1.49948 1.21889 0.90808 0.90776 1.01862 0.89350 1.21892 1.02819 1.00332 0.94872 1.63484 1.13744 1.14273 1.33401 1.23141 0.85606 0.97538 1.01139 1.22381 0.98261 0.99847 0.93788 1.22603 0.97519 0.95536 0.94605 1.23419 0.99844 0.85707 0.91518 1.50137 1.33468 1.11852 1.42630 1.19816 0.80340 0.88263 0.77485 1.90686 1.71402 1.18886 1.64070 1.23246 1.00210 1.01306 1.01970 1.85637 1.40233 1.14371 1.52355 1.23143 1.21987 0.93893 1.30340 0.89850 1.26181 0.97422 0.99786 0.95898 1.70188 1.30769 1.21713 1.32105 0.84969 0.77528 0.77137 0.78136 1.18464 1.20408 1.18581 1.23132 0.91170 0.97344 0.88721 1.22329 0.94263 0.99029 0.89075 0.93509 0.87288 0.93612 0.74617 0.92604 0.89916 0.89195 0.91211 0.88981 0.90293 0.90485 0.87738 0.88264 0.87795 0.87552 0.91955 0.90611 0.88644 0.90893 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 127.77 1.37 2.05 16 2 N -0.73 -6.04 5.62 -484.52 -2.72 -8.77 16 3 C 0.51 7.81 6.75 87.66 0.59 8.40 16 4 O -0.57 -14.31 15.43 -3.01 -0.05 -14.36 16 5 C 0.06 0.62 2.09 44.17 0.09 0.71 16 6 H 0.09 0.62 8.02 -2.39 -0.02 0.60 16 7 C -0.14 -0.84 8.86 71.98 0.64 -0.20 16 8 N -0.52 -7.88 4.76 -865.64 -4.12 -12.00 16 9 C 0.05 0.62 5.28 86.84 0.46 1.07 16 10 C -0.10 -1.66 6.41 31.62 0.20 -1.46 16 11 C -0.10 -1.72 0.97 -52.09 -0.05 -1.78 16 12 C 0.12 2.10 7.85 85.98 0.68 2.77 16 13 N -0.64 -18.38 3.62 -859.44 -3.11 -21.49 16 14 C 0.55 22.18 8.07 87.66 0.71 22.89 16 15 O -0.57 -28.72 16.59 -3.03 -0.05 -28.77 16 16 C -0.12 -4.83 5.90 71.24 0.42 -4.41 16 17 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 18 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 22 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C 0.12 2.75 8.15 85.98 0.70 3.45 16 27 C 0.08 1.37 5.02 86.14 0.43 1.80 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.42 0.54 8.32 -92.71 -0.77 -0.23 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.37 6.47 -2.38 -0.02 0.35 16 34 H 0.09 0.08 7.67 -2.38 -0.02 0.06 16 35 H 0.07 0.58 7.17 -2.38 -0.02 0.57 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 39 H 0.10 1.53 8.00 -2.39 -0.02 1.52 16 40 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 41 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.08 1.90 8.12 -2.39 -0.02 1.89 16 45 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 1.53 8.09 -2.38 -0.02 1.52 16 47 H 0.06 0.95 7.02 -2.39 -0.02 0.93 16 Total: -1.00 -86.96 396.18 -1.35 -88.30 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.20 Total: 11.98 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 7.35 Total: 5.71 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -9.66 Total: -98.40 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.10 Total: -43.13 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -86.96 -1.35 -88.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147031411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.266 kcal (2) G-P(sol) polarization free energy of solvation -86.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds