Wall clock time and date at job start Wed Apr 1 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99750 * 2 1 4 4 O 1.21284 * 119.99875 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99938 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47069 * 60.00953 * 5 3 2 7 7 C 1.52997 * 109.47313 * 300.00476 * 5 3 2 8 8 N 1.46901 * 109.46889 * 180.02562 * 5 3 2 9 9 C 1.47557 * 110.99830 * 175.51437 * 8 5 3 10 10 C 1.54595 * 107.32608 * 123.21761 * 9 8 5 11 11 C 1.53648 * 102.81677 * 20.84288 * 10 9 8 12 12 C 1.52376 * 116.38826 * 196.91092 * 11 10 9 13 13 N 1.47894 * 85.59499 * 218.66844 * 12 11 10 14 14 C 1.34773 * 134.34253 * 203.52036 * 13 12 11 15 15 O 1.21284 * 119.99866 * 179.97438 * 14 13 12 16 16 C 1.50692 * 120.00251 * 359.96068 * 14 13 12 17 17 S 1.80998 * 109.47267 * 180.02562 * 16 14 13 18 18 C 1.76208 * 100.00193 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99668 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99845 * 180.02562 * 18 17 16 21 21 N 1.31639 * 119.99692 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00440 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47118 * 90.00378 * 22 20 18 24 24 H 1.48502 * 109.47390 * 210.00544 * 22 20 18 25 25 H 1.48502 * 109.47137 * 330.00486 * 22 20 18 26 26 C 1.47887 * 91.31233 * 23.49298 * 13 12 11 27 27 C 1.48142 * 110.99925 * 296.50853 * 8 5 3 28 28 H 1.09006 * 109.46535 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47118 * 299.98949 * 1 2 3 30 30 H 1.09005 * 109.47502 * 59.99797 * 1 2 3 31 31 H 0.96994 * 120.00438 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47275 * 53.86729 * 7 5 3 33 33 H 1.09002 * 109.47020 * 293.86626 * 7 5 3 34 34 H 1.09003 * 109.47182 * 173.87033 * 7 5 3 35 35 H 1.09004 * 109.87294 * 242.64688 * 9 8 5 36 36 H 1.08988 * 109.87329 * 3.78156 * 9 8 5 37 37 H 1.09004 * 110.74732 * 139.17554 * 10 9 8 38 38 H 1.08998 * 110.74358 * 262.51115 * 10 9 8 39 39 H 1.08995 * 113.85314 * 332.83136 * 12 11 10 40 40 H 1.08993 * 113.85368 * 104.50083 * 12 11 10 41 41 H 1.08999 * 109.47700 * 300.00580 * 16 14 13 42 42 H 1.09009 * 109.46736 * 60.00730 * 16 14 13 43 43 H 0.96996 * 120.00104 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.85352 * 222.34153 * 26 13 12 45 45 H 1.08996 * 113.85468 * 90.67348 * 26 13 12 46 46 H 1.08996 * 110.41089 * 333.99710 * 27 8 5 47 47 H 1.09008 * 110.40633 * 96.42766 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0088 0.6538 -0.8909 7 6 4.1564 0.4457 1.2482 8 7 4.1354 2.5523 0.0002 9 6 5.6065 2.5931 0.1074 10 6 6.1353 3.3824 -1.1122 11 6 4.9062 4.1919 -1.5533 12 6 4.9506 4.7790 -2.9587 13 7 4.2885 5.9599 -2.3632 14 6 3.5183 6.9531 -2.8496 15 8 3.1005 7.8158 -2.1065 16 6 3.1763 6.9919 -4.3167 17 16 2.1374 8.4347 -4.6561 18 6 1.8956 8.2365 -6.3902 19 1 2.3436 7.4000 -6.9057 20 6 1.1293 9.1555 -7.0935 21 7 0.9482 9.0072 -8.3889 22 14 0.3537 10.6021 -6.2017 23 1 1.2936 11.7517 -6.2121 24 1 -0.9070 10.9871 -6.8856 25 1 0.0579 10.2174 -4.7982 26 6 4.8075 5.6166 -1.0216 27 6 3.7298 3.2594 -1.2368 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.7063 -0.5454 1.3047 33 1 3.8858 1.0188 2.1351 34 1 5.2409 0.3498 1.1946 35 1 5.8970 3.0972 1.0291 36 1 6.0071 1.5796 0.0948 37 1 6.9496 4.0454 -0.8196 38 1 6.4543 2.7032 -1.9028 39 1 5.9590 4.9759 -3.3225 40 1 4.3326 4.2440 -3.6796 41 1 4.0933 7.0592 -4.9020 42 1 2.6377 6.0839 -4.5883 43 1 0.4124 9.6492 -8.8804 44 1 4.0770 5.7391 -0.2219 45 1 5.7721 6.0696 -0.7930 46 1 3.5793 2.5484 -2.0491 47 1 2.8222 3.8379 -1.0638 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147031412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:56 Heat of formation + Delta-G solvation = -48.589923 kcal Electronic energy + Delta-G solvation = -27685.275465 eV Core-core repulsion = 23801.700054 eV Total energy + Delta-G solvation = -3883.575410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11742 -40.89221 -39.61879 -37.79625 -35.67018 -34.71139 -33.92636 -31.79303 -30.36795 -29.63446 -27.94117 -27.81332 -27.24368 -26.15069 -24.84896 -22.16352 -21.15610 -20.79769 -19.85005 -19.50285 -18.52666 -18.07095 -17.48454 -17.22561 -16.95318 -16.88916 -16.50074 -16.07322 -15.97267 -15.63486 -15.47079 -14.94058 -14.88206 -14.59618 -14.31583 -14.22481 -13.87688 -13.74084 -13.66191 -13.40016 -13.24203 -13.14330 -13.08224 -13.03273 -12.74018 -12.68333 -12.53787 -12.26714 -12.03442 -11.92300 -11.83491 -11.45788 -11.20508 -10.87939 -10.77965 -10.59194 -10.14140 -9.80715 -9.22703 -9.05722 -8.55270 -6.26995 0.90555 1.27927 1.40457 1.48220 1.50711 1.64241 1.91317 2.17091 2.22258 2.62754 2.82643 2.84118 3.29656 3.41771 3.51664 3.74712 3.82201 3.97585 4.08772 4.12800 4.15882 4.30847 4.34614 4.43093 4.43520 4.48103 4.53456 4.57720 4.60606 4.69347 4.76583 4.83117 4.85903 4.87898 4.92447 4.96989 5.05008 5.23451 5.27939 5.33991 5.44629 5.67353 5.92131 6.06933 6.07642 6.53521 6.59472 6.89723 7.02308 7.31324 8.57231 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.002521 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.172742 B =11104.115427 C =12260.346428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.502 3.498 4 O -0.574 6.574 5 C 0.062 3.938 6 H 0.091 0.909 7 C -0.138 4.138 8 N -0.531 5.531 9 C 0.041 3.959 10 C -0.115 4.115 11 C -0.092 4.092 12 C 0.117 3.883 13 N -0.648 5.648 14 C 0.550 3.450 15 O -0.571 6.571 16 C -0.098 4.098 17 S -0.179 6.179 18 C -0.527 4.527 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.260 1.260 24 H -0.256 1.256 25 H -0.241 1.241 26 C 0.126 3.874 27 C 0.082 3.918 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.419 0.581 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.278 0.722 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.052 0.948 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -28.108 19.687 37.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.378 5.378 3 C 0.288 3.712 4 O -0.452 6.452 5 C -0.050 4.050 6 H 0.109 0.891 7 C -0.195 4.195 8 N -0.256 5.256 9 C -0.085 4.085 10 C -0.153 4.153 11 C -0.094 4.094 12 C -0.005 4.005 13 N -0.384 5.384 14 C 0.338 3.662 15 O -0.451 6.451 16 C -0.249 4.249 17 S 0.048 5.952 18 C -0.675 4.675 19 H 0.081 0.919 20 C -0.158 4.158 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.184 1.184 24 H -0.180 1.180 25 H -0.166 1.166 26 C 0.005 3.995 27 C -0.046 4.046 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.256 0.744 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.128 0.872 46 H 0.070 0.930 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.389 -25.671 20.972 35.388 hybrid contribution -0.131 -0.672 -1.860 1.982 sum 12.258 -26.344 19.113 34.778 Atomic orbital electron populations 1.21595 0.79384 1.04072 1.00857 1.45716 1.07992 1.08707 1.75344 1.21247 0.91209 0.83582 0.75133 1.90754 1.71271 1.33240 1.49968 1.21888 0.90069 0.90940 1.02102 0.89127 1.21902 1.03221 0.99851 0.94561 1.63396 1.12336 1.12921 1.36956 1.23063 0.84726 1.01625 0.99090 1.22589 0.95518 0.98836 0.98394 1.22315 0.97921 0.93800 0.95341 1.23365 0.99187 0.81694 0.96209 1.50226 1.49209 1.25785 1.13178 1.19716 0.77907 0.79767 0.88762 1.90674 1.54936 1.39038 1.60410 1.23141 1.03849 1.02212 0.95720 1.84765 1.65906 1.35018 1.09508 1.22407 1.37966 1.15216 0.91906 0.91917 1.25535 0.95228 0.99936 0.95119 1.70007 1.39462 1.37896 1.07902 0.85884 0.79646 0.80064 0.80893 1.18418 1.17963 1.16564 1.23120 0.99281 0.92026 0.85116 1.22360 0.96420 0.95369 0.90426 0.86827 0.93694 0.94176 0.74412 0.89477 0.92815 0.88920 0.89947 0.89317 0.88089 0.88287 0.85870 0.89448 0.86968 0.87832 0.91240 0.92213 0.87167 0.92978 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 10.70 127.77 1.37 2.45 16 2 N -0.72 -8.65 5.57 -484.51 -2.70 -11.35 16 3 C 0.50 9.89 6.91 87.66 0.61 10.50 16 4 O -0.57 -18.44 14.64 -3.04 -0.04 -18.48 16 5 C 0.06 0.77 2.15 44.17 0.10 0.86 16 6 H 0.09 0.71 8.01 -2.39 -0.02 0.69 16 7 C -0.14 -0.85 8.80 71.98 0.63 -0.22 16 8 N -0.53 -9.04 4.79 -866.15 -4.15 -13.20 16 9 C 0.04 0.38 6.22 86.72 0.54 0.92 16 10 C -0.11 -0.91 6.35 31.36 0.20 -0.71 16 11 C -0.09 -1.55 0.99 -52.15 -0.05 -1.60 16 12 C 0.12 2.16 7.99 85.90 0.69 2.84 16 13 N -0.65 -19.19 3.62 -863.41 -3.12 -22.31 16 14 C 0.55 22.51 8.07 87.66 0.71 23.22 16 15 O -0.57 -28.56 16.59 -3.04 -0.05 -28.61 16 16 C -0.10 -4.20 5.90 71.23 0.42 -3.78 16 17 S -0.18 -9.75 18.55 -56.49 -1.05 -10.79 16 18 C -0.53 -32.05 10.04 67.95 0.68 -31.37 16 19 H 0.06 3.99 8.03 -2.91 -0.02 3.97 16 20 C 0.05 2.88 5.50 84.85 0.47 3.34 16 21 N -0.91 -56.96 13.97 21.65 0.30 -56.66 16 22 Si 0.91 46.83 27.74 68.60 1.90 48.73 16 23 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.24 -12.59 6.74 99.48 0.67 -11.92 16 26 C 0.13 2.95 8.14 85.91 0.70 3.65 16 27 C 0.08 1.78 4.87 86.20 0.42 2.20 16 28 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.42 1.50 8.18 -92.71 -0.76 0.74 16 32 H 0.09 0.14 7.40 -2.39 -0.02 0.13 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.19 6.46 -2.39 -0.02 0.17 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.33 6.04 -2.39 -0.01 0.32 16 37 H 0.10 0.53 7.99 -2.39 -0.02 0.51 16 38 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 41 H 0.11 4.35 8.14 -2.40 -0.02 4.33 16 42 H 0.10 4.20 8.14 -2.39 -0.02 4.18 16 43 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 44 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 45 H 0.11 2.00 8.04 -2.39 -0.02 1.98 16 46 H 0.05 1.05 7.71 -2.39 -0.02 1.03 16 47 H 0.05 1.52 7.13 -2.38 -0.02 1.51 16 Total: -1.00 -91.56 391.88 -1.26 -92.82 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.18 Total: 7.57 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 7.47 Total: 12.29 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -9.67 Total: -103.52 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.09 Total: -47.10 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Atomic # 16 Polarization: -9.75 SS G_CDS: -1.05 Total: -10.79 kcal Total: -91.56 -1.26 -92.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147031412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.229 kcal (2) G-P(sol) polarization free energy of solvation -91.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds