Wall clock time and date at job start Wed Apr 1 2020 01:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47445 * 2 1 4 4 C 1.34772 * 120.00244 * 179.97438 * 3 2 1 5 5 O 1.21274 * 119.99818 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.46895 * 109.47488 * 180.02562 * 6 4 3 8 8 C 1.48664 * 110.99672 * 290.12633 * 7 6 4 9 9 C 1.54685 * 104.65950 * 201.52948 * 8 7 6 10 10 C 1.53135 * 104.56477 * 23.68157 * 9 8 7 11 11 C 1.52281 * 116.37870 * 130.99126 * 10 9 8 12 12 N 1.47296 * 87.66607 * 91.51316 * 11 10 9 13 13 C 1.34775 * 135.91029 * 206.04344 * 12 11 10 14 14 O 1.21282 * 120.00577 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99768 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46692 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46740 * 119.99825 * 21 19 17 24 24 H 1.48497 * 109.47025 * 240.00183 * 21 19 17 25 25 C 1.47288 * 88.17117 * 26.30642 * 12 11 10 26 26 C 1.48846 * 111.00154 * 174.44551 * 7 6 4 27 27 H 1.09008 * 109.47264 * 300.00406 * 1 2 3 28 28 H 1.09000 * 109.47057 * 59.99670 * 1 2 3 29 29 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47106 * 239.99645 * 2 1 3 31 31 H 1.09006 * 109.47061 * 119.99609 * 2 1 3 32 32 H 0.97001 * 119.99362 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47301 * 59.99964 * 6 4 3 34 34 H 1.09005 * 109.46973 * 300.00488 * 6 4 3 35 35 H 1.08998 * 110.40188 * 82.73653 * 8 7 6 36 36 H 1.09004 * 110.50000 * 320.37471 * 8 7 6 37 37 H 1.08997 * 110.42489 * 264.90845 * 9 8 7 38 38 H 1.09005 * 110.41951 * 142.44617 * 9 8 7 39 39 H 1.09003 * 113.51450 * 336.81674 * 11 10 9 40 40 H 1.08992 * 113.57970 * 206.22587 * 11 10 9 41 41 H 1.09005 * 109.46867 * 60.00428 * 15 13 12 42 42 H 1.09000 * 109.47235 * 300.00468 * 15 13 12 43 43 H 0.97005 * 119.99878 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.51817 * 88.39463 * 25 12 11 45 45 H 1.09005 * 113.51889 * 218.99539 * 25 12 11 46 46 H 1.08998 * 110.47132 * 39.35532 * 26 7 6 47 47 H 1.08998 * 110.46781 * 276.74433 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1314 0.7057 0.0005 6 6 3.8458 3.0483 -0.0001 7 7 5.3147 3.0483 0.0001 8 6 5.8473 2.5713 1.3035 9 6 7.2872 3.1329 1.3671 10 6 7.2696 4.3449 0.4313 11 6 7.8544 5.6368 0.9863 12 7 9.1485 5.2254 0.4157 13 6 10.4465 5.4675 0.6860 14 8 10.7485 6.1926 1.6101 15 6 11.5226 4.8374 -0.1602 16 16 13.1477 5.3504 0.4499 17 6 14.1858 4.4942 -0.6876 18 1 13.7484 3.8828 -1.4631 19 6 15.5657 4.6064 -0.5878 20 7 16.0987 5.3520 0.3570 21 14 16.6663 3.6982 -1.7932 22 1 15.8270 2.9344 -2.7510 23 1 17.4993 4.6770 -2.5371 24 1 17.5474 2.7618 -1.0503 25 6 8.4046 4.4393 -0.5833 26 6 5.8481 4.4313 -0.1350 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3880 2.1185 -0.0004 33 1 3.4820 3.5626 0.8894 34 1 3.4828 3.5616 -0.8905 35 1 5.8629 1.4818 1.3318 36 1 5.2498 2.9635 2.1265 37 1 8.0014 2.3896 1.0131 38 1 7.5306 3.4413 2.3840 39 1 7.8538 5.6819 2.0754 40 1 7.4420 6.5349 0.5265 41 1 11.4050 5.1578 -1.1954 42 1 11.4399 3.7520 -0.1041 43 1 17.0630 5.4301 0.4271 44 1 8.1434 5.0067 -1.4766 45 1 8.8661 3.4787 -0.8124 46 1 5.2476 5.1301 0.4473 47 1 5.8728 4.7296 -1.1831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147031469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:29 Heat of formation + Delta-G solvation = -20.996246 kcal Electronic energy + Delta-G solvation = -26655.449393 eV Core-core repulsion = 22773.070534 eV Total energy + Delta-G solvation = -3882.378859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14627 -40.03101 -38.31613 -36.74544 -35.59423 -32.40411 -32.26847 -30.99631 -30.13886 -28.87713 -27.22149 -26.16334 -25.48055 -24.70396 -23.30153 -21.86260 -20.83602 -19.74161 -18.70814 -17.69389 -17.41280 -16.74587 -16.57971 -16.16778 -15.84760 -15.71721 -15.41558 -15.02652 -14.81767 -14.77689 -14.19172 -13.99438 -13.88271 -13.77261 -13.15305 -13.09764 -12.91895 -12.78560 -12.44709 -12.38165 -12.24135 -12.08779 -11.92688 -11.80885 -11.51381 -11.45290 -11.17526 -11.04483 -10.97949 -10.72717 -10.49508 -10.13409 -9.78138 -9.53140 -9.34657 -9.04790 -8.84504 -8.53961 -8.20447 -6.47525 -6.19157 -3.89582 2.28812 2.60178 2.81150 3.10134 3.24015 3.27594 3.33447 3.56840 3.61116 4.07111 4.21133 4.22968 4.27979 4.44062 4.54382 4.59863 4.68754 4.75284 4.79609 4.81845 4.93780 4.95705 5.16118 5.19702 5.28288 5.29722 5.33921 5.37048 5.46895 5.47701 5.49242 5.55496 5.61304 5.65625 5.67558 5.90379 5.94297 5.99312 6.02320 6.07398 6.19646 6.43481 6.47494 7.05737 7.62926 7.86836 7.91798 8.38464 8.59237 9.26327 10.88383 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.001795 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.302646 B =15591.276570 C =16457.955065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.512 3.488 5 O -0.516 6.516 6 C 0.025 3.975 7 N -0.491 5.491 8 C 0.035 3.965 9 C -0.096 4.096 10 C -0.101 4.101 11 C 0.118 3.882 12 N -0.651 5.651 13 C 0.562 3.438 14 O -0.517 6.517 15 C -0.144 4.144 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.119 3.881 26 C 0.051 3.949 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.296 -5.951 -1.658 35.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.297 3.703 5 O -0.390 6.390 6 C -0.107 4.107 7 N -0.215 5.215 8 C -0.093 4.093 9 C -0.134 4.134 10 C -0.102 4.102 11 C -0.005 4.005 12 N -0.390 5.390 13 C 0.352 3.648 14 O -0.391 6.391 15 C -0.294 4.294 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.004 4.004 26 C -0.077 4.077 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -33.669 -5.808 -0.589 34.171 hybrid contribution -0.360 -0.468 -1.282 1.411 sum -34.029 -6.275 -1.872 34.653 Atomic orbital electron populations 1.22007 0.94423 1.03343 1.02489 1.21279 0.94168 0.82931 1.02501 1.46061 1.07164 1.08965 1.77041 1.20548 0.82010 0.91545 0.76158 1.90727 1.54977 1.46046 1.47282 1.22158 0.90969 0.94229 1.03340 1.65263 1.04840 1.18934 1.32422 1.23302 0.94719 1.02270 0.88967 1.21976 0.96713 0.95682 0.99048 1.22136 0.93990 0.96445 0.97625 1.22793 0.81658 0.95865 1.00230 1.49717 1.03613 1.51362 1.34291 1.19925 0.80326 0.80137 0.84391 1.90710 1.80650 1.37070 1.30645 1.23467 1.00278 1.03580 1.02109 1.85381 0.90310 1.64448 1.43352 1.22909 0.93293 1.34235 1.17775 0.90848 1.24992 0.97118 0.95378 0.96083 1.70033 1.11952 1.37020 1.31318 0.86111 0.79891 0.79235 0.80241 1.19585 1.20572 1.20551 1.22940 0.88640 0.96523 0.92346 1.22890 0.93554 0.89528 1.01762 0.91998 0.91940 0.90734 0.91446 0.91549 0.76721 0.91630 0.87682 0.88621 0.94101 0.89990 0.90522 0.90408 0.90006 0.89349 0.89283 0.92256 0.89676 0.89884 0.92784 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.39 10.03 37.16 0.37 -0.02 16 2 C 0.11 0.58 6.39 -4.04 -0.03 0.56 16 3 N -0.74 -3.69 5.56 -60.30 -0.33 -4.03 16 4 C 0.51 4.15 7.63 -10.99 -0.08 4.07 16 5 O -0.52 -6.56 14.85 5.56 0.08 -6.47 16 6 C 0.02 0.15 5.30 -4.98 -0.03 0.12 16 7 N -0.49 -4.17 5.06 -231.60 -1.17 -5.34 16 8 C 0.03 0.32 5.82 -1.96 -0.01 0.31 16 9 C -0.10 -0.96 6.53 -25.77 -0.17 -1.13 16 10 C -0.10 -0.93 1.29 -154.92 -0.20 -1.13 16 11 C 0.12 1.31 7.92 -7.77 -0.06 1.25 16 12 N -0.65 -9.73 3.68 -185.17 -0.68 -10.41 16 13 C 0.56 11.39 8.09 -10.98 -0.09 11.30 16 14 O -0.52 -12.51 16.64 5.56 0.09 -12.42 16 15 C -0.14 -3.10 5.98 36.01 0.22 -2.88 16 16 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 17 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 18 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 21 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.12 1.31 7.70 -7.64 -0.06 1.25 16 26 C 0.05 0.36 5.95 -2.61 -0.02 0.34 16 27 H 0.06 0.12 8.14 -51.92 -0.42 -0.31 16 28 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 0.78 8.47 -40.82 -0.35 0.43 16 33 H 0.07 0.27 7.88 -51.93 -0.41 -0.14 16 34 H 0.11 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.10 1.07 6.93 -51.93 -0.36 0.71 16 36 H 0.04 0.33 7.82 -51.93 -0.41 -0.08 16 37 H 0.08 0.91 7.85 -51.93 -0.41 0.51 16 38 H 0.08 0.77 7.83 -51.93 -0.41 0.37 16 39 H 0.08 0.91 7.93 -51.93 -0.41 0.49 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.78 8.14 -51.91 -0.42 1.35 16 42 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.09 0.78 7.99 -51.93 -0.41 0.37 16 45 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 46 H 0.05 0.30 7.98 -51.93 -0.41 -0.12 16 47 H 0.09 0.56 7.86 -51.93 -0.41 0.15 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -38.48 399.96 -10.19 -48.67 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -7.75 Total: -3.83 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 0.05 Total: 0.79 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -1.45 Total: -45.62 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.48 -10.19 -48.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147031469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.674 kcal (2) G-P(sol) polarization free energy of solvation -38.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds