Wall clock time and date at job start Wed Apr 1 2020 01:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47445 * 2 1 4 4 C 1.34772 * 120.00244 * 179.97438 * 3 2 1 5 5 O 1.21274 * 119.99818 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.46895 * 109.47488 * 180.02562 * 6 4 3 8 8 C 1.48664 * 110.99672 * 290.12633 * 7 6 4 9 9 C 1.54685 * 104.65950 * 201.52948 * 8 7 6 10 10 C 1.53135 * 104.56477 * 23.68157 * 9 8 7 11 11 C 1.52281 * 116.37870 * 130.99126 * 10 9 8 12 12 N 1.47296 * 87.66607 * 91.51316 * 11 10 9 13 13 C 1.34775 * 135.91029 * 206.04344 * 12 11 10 14 14 O 1.21282 * 120.00577 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99768 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46692 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46740 * 119.99825 * 21 19 17 24 24 H 1.48497 * 109.47025 * 240.00183 * 21 19 17 25 25 C 1.47288 * 88.17117 * 26.30642 * 12 11 10 26 26 C 1.48846 * 111.00154 * 174.44551 * 7 6 4 27 27 H 1.09008 * 109.47264 * 300.00406 * 1 2 3 28 28 H 1.09000 * 109.47057 * 59.99670 * 1 2 3 29 29 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47106 * 239.99645 * 2 1 3 31 31 H 1.09006 * 109.47061 * 119.99609 * 2 1 3 32 32 H 0.97001 * 119.99362 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47301 * 59.99964 * 6 4 3 34 34 H 1.09005 * 109.46973 * 300.00488 * 6 4 3 35 35 H 1.08998 * 110.40188 * 82.73653 * 8 7 6 36 36 H 1.09004 * 110.50000 * 320.37471 * 8 7 6 37 37 H 1.08997 * 110.42489 * 264.90845 * 9 8 7 38 38 H 1.09005 * 110.41951 * 142.44617 * 9 8 7 39 39 H 1.09003 * 113.51450 * 336.81674 * 11 10 9 40 40 H 1.08992 * 113.57970 * 206.22587 * 11 10 9 41 41 H 1.09005 * 109.46867 * 60.00428 * 15 13 12 42 42 H 1.09000 * 109.47235 * 300.00468 * 15 13 12 43 43 H 0.97005 * 119.99878 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.51817 * 88.39463 * 25 12 11 45 45 H 1.09005 * 113.51889 * 218.99539 * 25 12 11 46 46 H 1.08998 * 110.47132 * 39.35532 * 26 7 6 47 47 H 1.08998 * 110.46781 * 276.74433 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1314 0.7057 0.0005 6 6 3.8458 3.0483 -0.0001 7 7 5.3147 3.0483 0.0001 8 6 5.8473 2.5713 1.3035 9 6 7.2872 3.1329 1.3671 10 6 7.2696 4.3449 0.4313 11 6 7.8544 5.6368 0.9863 12 7 9.1485 5.2254 0.4157 13 6 10.4465 5.4675 0.6860 14 8 10.7485 6.1926 1.6101 15 6 11.5226 4.8374 -0.1602 16 16 13.1477 5.3504 0.4499 17 6 14.1858 4.4942 -0.6876 18 1 13.7484 3.8828 -1.4631 19 6 15.5657 4.6064 -0.5878 20 7 16.0987 5.3520 0.3570 21 14 16.6663 3.6982 -1.7932 22 1 15.8270 2.9344 -2.7510 23 1 17.4993 4.6770 -2.5371 24 1 17.5474 2.7618 -1.0503 25 6 8.4046 4.4393 -0.5833 26 6 5.8481 4.4313 -0.1350 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3880 2.1185 -0.0004 33 1 3.4820 3.5626 0.8894 34 1 3.4828 3.5616 -0.8905 35 1 5.8629 1.4818 1.3318 36 1 5.2498 2.9635 2.1265 37 1 8.0014 2.3896 1.0131 38 1 7.5306 3.4413 2.3840 39 1 7.8538 5.6819 2.0754 40 1 7.4420 6.5349 0.5265 41 1 11.4050 5.1578 -1.1954 42 1 11.4399 3.7520 -0.1041 43 1 17.0630 5.4301 0.4271 44 1 8.1434 5.0067 -1.4766 45 1 8.8661 3.4787 -0.8124 46 1 5.2476 5.1301 0.4473 47 1 5.8728 4.7296 -1.1831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147031469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:29 Heat of formation + Delta-G solvation = -51.273411 kcal Electronic energy + Delta-G solvation = -26656.762309 eV Core-core repulsion = 22773.070534 eV Total energy + Delta-G solvation = -3883.691775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06743 -40.72081 -39.59086 -37.68494 -36.15335 -34.61209 -33.09000 -31.82429 -31.10134 -29.89927 -28.05323 -27.64640 -27.07257 -25.61706 -23.72823 -22.49501 -21.38834 -20.98793 -19.86282 -19.41774 -18.10515 -17.90812 -17.34960 -16.96583 -16.89528 -16.83280 -16.70044 -16.30048 -15.94984 -15.70214 -15.34819 -15.29514 -14.75172 -14.62859 -14.49930 -14.11880 -13.73722 -13.62809 -13.44475 -13.25477 -13.19525 -12.97003 -12.92636 -12.67131 -12.62571 -12.61617 -12.38739 -12.28690 -12.24874 -11.96156 -11.73936 -11.34347 -11.17879 -10.93760 -10.75039 -10.32524 -10.05067 -9.76141 -9.38700 -8.70961 -8.37119 -6.16199 1.19386 1.40105 1.41504 1.53729 1.55996 1.71960 1.97403 2.16686 2.24955 2.94076 2.96975 3.20417 3.31136 3.51977 3.59856 3.76001 3.93644 3.99012 4.19227 4.19396 4.22295 4.24041 4.38415 4.41213 4.44318 4.47559 4.53385 4.55769 4.59954 4.63582 4.72293 4.82263 4.89759 4.90501 4.96366 4.97737 5.07176 5.15440 5.23468 5.27667 5.39459 5.53704 5.82178 5.94680 6.17696 6.60075 6.65892 7.03941 7.08928 7.37096 8.72593 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.001795 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.302646 B =15591.276570 C =16457.955065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.723 5.723 4 C 0.505 3.495 5 O -0.573 6.573 6 C 0.028 3.972 7 N -0.512 5.512 8 C 0.045 3.955 9 C -0.100 4.100 10 C -0.084 4.084 11 C 0.117 3.883 12 N -0.651 5.651 13 C 0.560 3.440 14 O -0.570 6.570 15 C -0.119 4.119 16 S -0.148 6.148 17 C -0.548 4.548 18 H 0.081 0.919 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 1.000 3.000 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.113 3.887 26 C 0.060 3.940 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.417 0.583 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.272 0.728 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.307 -5.746 -3.686 38.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 N -0.377 5.377 4 C 0.292 3.708 5 O -0.451 6.451 6 C -0.103 4.103 7 N -0.237 5.237 8 C -0.083 4.083 9 C -0.138 4.138 10 C -0.085 4.085 11 C -0.005 4.005 12 N -0.387 5.387 13 C 0.349 3.651 14 O -0.449 6.449 15 C -0.270 4.270 16 S 0.079 5.921 17 C -0.696 4.696 18 H 0.099 0.901 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.822 3.178 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.008 4.008 26 C -0.067 4.067 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.254 0.746 33 H 0.110 0.890 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -36.800 -5.597 -2.644 37.317 hybrid contribution 0.367 -0.583 -0.641 0.942 sum -36.433 -6.181 -3.286 37.100 Atomic orbital electron populations 1.21944 0.91937 1.03988 1.03395 1.21288 0.96108 0.82831 1.00976 1.45981 1.06739 1.09592 1.75420 1.21107 0.82407 0.92135 0.75184 1.90714 1.56482 1.47802 1.50116 1.22257 0.89339 0.92874 1.05864 1.65194 1.06747 1.19977 1.31773 1.23095 0.94291 1.00660 0.90256 1.21956 0.97103 0.95797 0.98942 1.21958 0.95331 0.94807 0.96443 1.23136 0.79217 0.97984 1.00211 1.49704 1.02976 1.50707 1.35350 1.19566 0.81951 0.79856 0.83745 1.90680 1.81918 1.39561 1.32726 1.23259 0.96786 1.04111 1.02813 1.85527 0.95545 1.65726 1.45279 1.23223 0.93979 1.34466 1.17890 0.90110 1.26138 0.98733 0.96080 0.98054 1.70189 1.12559 1.38576 1.33356 0.84886 0.77485 0.77883 0.77569 1.18178 1.19635 1.19798 1.23339 0.88205 0.96205 0.93095 1.22906 0.91456 0.89256 1.03105 0.91043 0.90956 0.90303 0.93083 0.93146 0.74622 0.89006 0.84829 0.91378 0.92716 0.91935 0.91100 0.91173 0.86982 0.87721 0.88221 0.91888 0.86581 0.90433 0.90134 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 10.03 71.98 0.72 0.28 16 2 C 0.11 1.07 6.39 86.38 0.55 1.62 16 3 N -0.72 -5.91 5.56 -463.07 -2.57 -8.48 16 4 C 0.50 7.44 7.63 87.66 0.67 8.11 16 5 O -0.57 -14.74 14.85 -3.01 -0.04 -14.78 16 6 C 0.03 0.23 5.30 85.56 0.45 0.68 16 7 N -0.51 -7.29 5.06 -886.64 -4.49 -11.78 16 8 C 0.04 0.78 5.82 86.54 0.50 1.28 16 9 C -0.10 -1.93 6.53 31.21 0.20 -1.73 16 10 C -0.08 -1.34 1.29 -52.44 -0.07 -1.41 16 11 C 0.12 2.31 7.92 83.53 0.66 2.97 16 12 N -0.65 -18.65 3.68 -858.13 -3.16 -21.81 16 13 C 0.56 22.89 8.09 87.66 0.71 23.60 16 14 O -0.57 -28.55 16.64 -3.04 -0.05 -28.60 16 15 C -0.12 -5.16 5.98 71.24 0.43 -4.73 16 16 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 17 C -0.55 -32.42 9.50 67.96 0.65 -31.77 16 18 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.86 5.49 84.86 0.47 1.33 16 20 N -0.91 -57.01 13.22 21.65 0.29 -56.72 16 21 Si 1.00 44.71 29.55 68.60 2.03 46.74 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 C 0.11 2.20 7.70 83.62 0.64 2.85 16 26 C 0.06 0.58 5.95 86.01 0.51 1.09 16 27 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 28 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.17 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.42 0.35 8.47 -92.71 -0.79 -0.44 16 33 H 0.09 0.33 7.88 -2.39 -0.02 0.31 16 34 H 0.13 0.37 8.13 -2.38 -0.02 0.35 16 35 H 0.07 1.58 6.93 -2.39 -0.02 1.56 16 36 H 0.05 0.77 7.82 -2.38 -0.02 0.75 16 37 H 0.06 1.44 7.85 -2.39 -0.02 1.42 16 38 H 0.07 1.43 7.83 -2.38 -0.02 1.41 16 39 H 0.07 1.53 7.93 -2.39 -0.02 1.52 16 40 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 42 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 43 H 0.27 15.71 8.31 -92.70 -0.77 14.93 16 44 H 0.12 1.64 7.99 -2.39 -0.02 1.62 16 45 H 0.08 1.63 7.95 -2.38 -0.02 1.62 16 46 H 0.08 0.42 7.98 -2.39 -0.02 0.40 16 47 H 0.11 0.74 7.86 -2.39 -0.02 0.72 16 Total: -1.00 -89.33 399.96 -1.88 -91.21 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.18 Total: 9.82 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 7.10 Total: 4.16 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -9.93 Total: -98.79 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.10 Total: -43.38 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -89.33 -1.88 -91.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147031469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.941 kcal (2) G-P(sol) polarization free energy of solvation -89.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds