Wall clock time and date at job start Wed Apr 1 2020 00:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81406 * 102.99968 * 2 1 4 4 H 1.08993 * 109.47279 * 305.00176 * 3 2 1 5 5 C 1.53002 * 109.46746 * 65.00244 * 3 2 1 6 6 C 1.50700 * 109.46822 * 185.00310 * 3 2 1 7 7 O 1.21278 * 120.00315 * 339.99861 * 6 3 2 8 8 N 1.34772 * 119.99648 * 160.00560 * 6 3 2 9 9 C 1.47891 * 134.34305 * 179.97438 * 8 6 3 10 10 C 1.52387 * 85.59519 * 156.52818 * 9 8 6 11 11 C 1.47893 * 134.34617 * 0.02562 * 8 6 3 12 12 C 1.53639 * 116.37745 * 141.34379 * 10 9 8 13 13 C 1.54601 * 102.81225 * 95.34710 * 12 10 9 14 14 N 1.47558 * 107.32834 * 20.84345 * 13 12 10 15 15 C 1.46899 * 111.00287 * 123.22138 * 14 13 12 16 16 C 1.50698 * 109.46987 * 69.87036 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31413 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99702 * 23 21 19 25 25 H 1.48498 * 109.47011 * 209.99970 * 23 21 19 26 26 H 1.48494 * 109.47201 * 329.99943 * 23 21 19 27 27 C 1.48145 * 108.68777 * 0.86569 * 14 13 12 28 28 H 1.09002 * 109.47371 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46963 * 299.99712 * 1 2 3 30 30 H 1.09004 * 109.47740 * 59.99315 * 1 2 3 31 31 H 1.09004 * 109.46778 * 59.99972 * 5 3 2 32 32 H 1.09002 * 109.46867 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47321 * 300.00065 * 5 3 2 34 34 H 1.08996 * 113.85223 * 42.36154 * 9 8 6 35 35 H 1.09001 * 113.85632 * 270.69164 * 9 8 6 36 36 H 1.09000 * 113.85143 * 89.30819 * 11 8 6 37 37 H 1.08999 * 113.85191 * 317.64029 * 11 8 6 38 38 H 1.08997 * 110.74538 * 337.01632 * 12 10 9 39 39 H 1.09001 * 110.74693 * 213.67153 * 12 10 9 40 40 H 1.09001 * 109.86844 * 261.41168 * 13 12 10 41 41 H 1.09000 * 109.87238 * 140.27737 * 13 12 10 42 42 H 1.09003 * 109.46477 * 309.87526 * 15 14 13 43 43 H 1.08993 * 109.47002 * 189.87852 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.39866 * 96.34184 * 27 14 13 47 47 H 1.08997 * 110.40905 * 218.77337 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8417 5 6 1.7428 2.4015 1.3074 6 6 3.7141 1.9386 -0.1239 7 8 4.4551 1.0200 0.1554 8 7 4.2252 3.1124 -0.5450 9 6 5.5948 3.6197 -0.7772 10 6 4.9389 4.6151 -1.7264 11 6 3.6395 4.4061 -0.9579 12 6 5.5120 6.0406 -1.7233 13 6 6.5168 6.0086 -2.8979 14 7 6.1311 4.8871 -3.7758 15 6 5.8871 5.3522 -5.1477 16 6 7.1929 5.7611 -5.7791 17 8 8.2253 5.6732 -5.1485 18 7 7.2137 6.2234 -7.0449 19 6 8.4009 6.6007 -7.6175 20 1 9.3200 6.5233 -7.0557 21 6 8.4216 7.0828 -8.9205 22 7 9.5594 7.4450 -9.4692 23 14 6.8317 7.2175 -9.8919 24 1 6.2279 8.5560 -9.6701 25 1 7.1182 7.0370 -11.3378 26 1 5.8850 6.1665 -9.4400 27 6 4.9247 4.2369 -3.2131 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 2.2354 1.9148 2.1492 32 1 1.9883 3.4635 1.3076 33 1 0.6636 2.2778 1.3970 34 1 6.2514 2.9048 -1.2730 35 1 6.0488 4.0806 0.1000 36 1 3.4960 5.1074 -0.1359 37 1 2.7609 4.3087 -1.5957 38 1 6.0232 6.2492 -0.7835 39 1 4.7262 6.7731 -1.9075 40 1 7.5262 5.8514 -2.5177 41 1 6.4692 6.9461 -3.4518 42 1 5.2105 6.2064 -5.1267 43 1 5.4383 4.5473 -5.7297 44 1 6.3881 6.2933 -7.5494 45 1 9.5739 7.7812 -10.3789 46 1 4.0259 4.6222 -3.6946 47 1 4.9861 3.1551 -3.3307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147034026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:05 Heat of formation + Delta-G solvation = -12.244626 kcal Electronic energy + Delta-G solvation = -27446.452762 eV Core-core repulsion = 23564.453402 eV Total energy + Delta-G solvation = -3881.999360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28483 -39.21809 -38.27743 -36.46727 -33.95392 -33.79279 -31.80883 -31.46072 -29.39357 -29.08810 -27.76407 -26.87174 -25.70419 -24.48677 -23.78985 -21.24154 -20.00559 -19.33431 -19.00005 -18.19963 -17.53532 -17.17372 -16.22149 -16.04181 -15.87794 -15.47411 -15.06805 -14.82671 -14.74548 -14.56386 -14.16732 -13.94847 -13.80580 -13.57251 -13.52870 -13.18545 -12.98008 -12.76668 -12.72753 -12.46995 -12.38212 -12.27748 -12.17593 -11.99158 -11.74888 -11.47500 -11.26068 -11.13232 -11.00489 -10.66447 -10.60111 -10.25181 -10.01561 -9.97249 -9.55573 -9.05756 -8.58339 -8.17253 -8.05238 -8.01523 -6.30377 -3.81685 1.03331 2.09218 2.26539 2.49053 3.02131 3.05558 3.14457 3.69435 3.75484 3.81948 4.10027 4.13607 4.19779 4.33739 4.45968 4.55690 4.66140 4.69124 4.71218 4.83352 4.91402 4.93410 4.98456 5.07406 5.19758 5.20167 5.26710 5.29850 5.41409 5.47230 5.49716 5.50667 5.55181 5.62462 5.66991 5.74860 5.84533 5.90084 6.02733 6.35417 7.09157 7.12230 7.29986 7.59199 7.78672 8.15217 8.61219 8.96337 9.43336 9.84755 10.82854 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020548 B = 0.002060 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.362701 B =13585.828684 C =14191.130213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.187 6.187 3 C -0.089 4.089 4 H 0.105 0.895 5 C -0.140 4.140 6 C 0.555 3.445 7 O -0.517 6.517 8 N -0.640 5.640 9 C 0.132 3.868 10 C -0.103 4.103 11 C 0.115 3.885 12 C -0.129 4.129 13 C 0.056 3.944 14 N -0.504 5.504 15 C 0.038 3.962 16 C 0.453 3.547 17 O -0.557 6.557 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.068 3.932 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.052 0.948 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.221 -5.590 19.693 30.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.039 5.961 3 C -0.221 4.221 4 H 0.124 0.876 5 C -0.199 4.199 6 C 0.342 3.658 7 O -0.392 6.392 8 N -0.377 5.377 9 C 0.011 3.989 10 C -0.104 4.104 11 C -0.008 4.008 12 C -0.168 4.168 13 C -0.071 4.071 14 N -0.228 5.228 15 C -0.094 4.094 16 C 0.238 3.762 17 O -0.438 6.438 18 N -0.234 5.234 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.163 4.163 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.059 4.059 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.979 -7.514 20.107 30.014 hybrid contribution -2.845 1.916 -1.087 3.599 sum -23.824 -5.597 19.020 30.995 Atomic orbital electron populations 1.23559 0.95668 1.06771 1.04880 1.87545 1.04828 1.05907 1.97843 1.23273 0.97129 0.98398 1.03301 0.87640 1.21972 1.01907 1.01039 0.95004 1.19266 0.88529 0.81566 0.76411 1.90771 1.60535 1.39399 1.48545 1.50103 1.10261 1.10867 1.66462 1.23004 0.85073 0.93936 0.96925 1.22426 0.95641 0.96455 0.95918 1.23099 0.97282 0.83278 0.97159 1.22646 0.99303 0.94347 1.00530 1.22806 0.99283 0.92900 0.92118 1.63311 1.31037 1.27652 1.00825 1.22116 0.96792 0.99630 0.90817 1.19635 0.90128 0.83675 0.82748 1.90566 1.33985 1.56895 1.62328 1.42215 1.09253 1.59338 1.12548 1.19421 0.87124 1.39163 0.97458 0.86294 1.25038 0.97140 0.97473 0.96608 1.69622 1.24735 1.42815 1.15067 0.86674 0.83267 0.78717 0.80734 1.19729 1.20200 1.19512 1.22637 0.92190 1.00542 0.90561 0.87699 0.90401 0.90506 0.90591 0.91271 0.91219 0.88828 0.89276 0.88995 0.89786 0.90131 0.90795 0.89565 0.92395 0.93180 0.89346 0.79806 0.91654 0.92995 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 10.45 101.05 1.06 0.31 16 2 S -0.19 -1.84 21.04 -107.50 -2.26 -4.10 16 3 C -0.09 -0.74 2.93 -27.88 -0.08 -0.82 16 4 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 5 C -0.14 -0.83 9.08 37.16 0.34 -0.49 16 6 C 0.56 6.43 7.23 -10.99 -0.08 6.35 16 7 O -0.52 -8.33 16.77 5.56 0.09 -8.24 16 8 N -0.64 -6.07 3.62 -186.79 -0.68 -6.75 16 9 C 0.13 1.30 8.14 -3.59 -0.03 1.27 16 10 C -0.10 -0.89 0.99 -154.83 -0.15 -1.04 16 11 C 0.11 0.71 7.96 -3.58 -0.03 0.68 16 12 C -0.13 -1.12 6.35 -25.56 -0.16 -1.29 16 13 C 0.06 0.77 5.67 -2.62 -0.01 0.76 16 14 N -0.50 -7.50 4.86 -233.13 -1.13 -8.63 16 15 C 0.04 0.61 5.03 -4.98 -0.03 0.59 16 16 C 0.45 10.08 7.43 -10.99 -0.08 10.00 16 17 O -0.56 -14.68 15.12 5.55 0.08 -14.60 16 18 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 19 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 22 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 23 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 27 C 0.07 0.75 6.10 -2.93 -0.02 0.73 16 28 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.08 0.32 7.14 -51.92 -0.37 -0.05 16 30 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.29 6.92 -51.93 -0.36 -0.06 16 34 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 35 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.08 0.60 7.99 -51.93 -0.41 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.86 7.31 -51.93 -0.38 0.48 16 42 H 0.05 0.68 7.96 -51.93 -0.41 0.27 16 43 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 44 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 46 H 0.05 0.48 7.80 -51.93 -0.40 0.08 16 47 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -35.98 394.04 -9.09 -45.07 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.61 Total: 6.39 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 0.47 Total: 9.39 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -1.09 Total: -54.34 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.18 Total: -22.84 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.26 Total: -4.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.98 -9.09 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147034026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.823 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds