Wall clock time and date at job start Wed Apr 1 2020 00:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81406 * 102.99968 * 2 1 4 4 H 1.08993 * 109.47279 * 305.00176 * 3 2 1 5 5 C 1.53002 * 109.46746 * 65.00244 * 3 2 1 6 6 C 1.50700 * 109.46822 * 185.00310 * 3 2 1 7 7 O 1.21278 * 120.00315 * 339.99861 * 6 3 2 8 8 N 1.34772 * 119.99648 * 160.00560 * 6 3 2 9 9 C 1.47891 * 134.34305 * 179.97438 * 8 6 3 10 10 C 1.52387 * 85.59519 * 156.52818 * 9 8 6 11 11 C 1.47893 * 134.34617 * 0.02562 * 8 6 3 12 12 C 1.53639 * 116.37745 * 141.34379 * 10 9 8 13 13 C 1.54601 * 102.81225 * 95.34710 * 12 10 9 14 14 N 1.47558 * 107.32834 * 20.84345 * 13 12 10 15 15 C 1.46899 * 111.00287 * 123.22138 * 14 13 12 16 16 C 1.50698 * 109.46987 * 69.87036 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31413 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99702 * 23 21 19 25 25 H 1.48498 * 109.47011 * 209.99970 * 23 21 19 26 26 H 1.48494 * 109.47201 * 329.99943 * 23 21 19 27 27 C 1.48145 * 108.68777 * 0.86569 * 14 13 12 28 28 H 1.09002 * 109.47371 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46963 * 299.99712 * 1 2 3 30 30 H 1.09004 * 109.47740 * 59.99315 * 1 2 3 31 31 H 1.09004 * 109.46778 * 59.99972 * 5 3 2 32 32 H 1.09002 * 109.46867 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47321 * 300.00065 * 5 3 2 34 34 H 1.08996 * 113.85223 * 42.36154 * 9 8 6 35 35 H 1.09001 * 113.85632 * 270.69164 * 9 8 6 36 36 H 1.09000 * 113.85143 * 89.30819 * 11 8 6 37 37 H 1.08999 * 113.85191 * 317.64029 * 11 8 6 38 38 H 1.08997 * 110.74538 * 337.01632 * 12 10 9 39 39 H 1.09001 * 110.74693 * 213.67153 * 12 10 9 40 40 H 1.09001 * 109.86844 * 261.41168 * 13 12 10 41 41 H 1.09000 * 109.87238 * 140.27737 * 13 12 10 42 42 H 1.09003 * 109.46477 * 309.87526 * 15 14 13 43 43 H 1.08993 * 109.47002 * 189.87852 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.39866 * 96.34184 * 27 14 13 47 47 H 1.08997 * 110.40905 * 218.77337 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8417 5 6 1.7428 2.4015 1.3074 6 6 3.7141 1.9386 -0.1239 7 8 4.4551 1.0200 0.1554 8 7 4.2252 3.1124 -0.5450 9 6 5.5948 3.6197 -0.7772 10 6 4.9389 4.6151 -1.7264 11 6 3.6395 4.4061 -0.9579 12 6 5.5120 6.0406 -1.7233 13 6 6.5168 6.0086 -2.8979 14 7 6.1311 4.8871 -3.7758 15 6 5.8871 5.3522 -5.1477 16 6 7.1929 5.7611 -5.7791 17 8 8.2253 5.6732 -5.1485 18 7 7.2137 6.2234 -7.0449 19 6 8.4009 6.6007 -7.6175 20 1 9.3200 6.5233 -7.0557 21 6 8.4216 7.0828 -8.9205 22 7 9.5594 7.4450 -9.4692 23 14 6.8317 7.2175 -9.8919 24 1 6.2279 8.5560 -9.6701 25 1 7.1182 7.0370 -11.3378 26 1 5.8850 6.1665 -9.4400 27 6 4.9247 4.2369 -3.2131 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 2.2354 1.9148 2.1492 32 1 1.9883 3.4635 1.3076 33 1 0.6636 2.2778 1.3970 34 1 6.2514 2.9048 -1.2730 35 1 6.0488 4.0806 0.1000 36 1 3.4960 5.1074 -0.1359 37 1 2.7609 4.3087 -1.5957 38 1 6.0232 6.2492 -0.7835 39 1 4.7262 6.7731 -1.9075 40 1 7.5262 5.8514 -2.5177 41 1 6.4692 6.9461 -3.4518 42 1 5.2105 6.2064 -5.1267 43 1 5.4383 4.5473 -5.7297 44 1 6.3881 6.2933 -7.5494 45 1 9.5739 7.7812 -10.3789 46 1 4.0259 4.6222 -3.6946 47 1 4.9861 3.1551 -3.3307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147034026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:04 Heat of formation + Delta-G solvation = -40.856151 kcal Electronic energy + Delta-G solvation = -27447.693451 eV Core-core repulsion = 23564.453402 eV Total energy + Delta-G solvation = -3883.240049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06174 -40.47173 -39.65314 -37.57341 -35.91755 -34.46495 -33.74950 -32.56780 -30.13757 -29.61460 -28.99776 -27.53357 -26.89483 -25.62032 -24.80335 -22.37638 -21.22805 -20.75800 -20.13470 -19.63991 -18.27646 -17.92974 -17.67645 -17.05008 -16.87730 -16.65592 -16.30233 -16.05231 -15.66753 -15.36296 -15.21798 -15.11757 -14.68816 -14.48245 -14.36453 -14.31538 -14.15951 -13.84034 -13.74592 -13.39596 -13.35190 -13.17747 -13.01108 -12.91467 -12.78679 -12.63748 -12.41482 -12.38437 -12.00446 -11.97353 -11.92708 -11.48808 -11.43440 -10.85867 -10.79998 -10.39203 -10.22780 -9.81410 -9.14825 -8.75583 -8.39989 -6.00799 0.44191 1.30599 1.36236 1.45390 1.45561 1.62975 1.77640 1.99011 2.24116 2.63019 3.13636 3.16060 3.20319 3.38967 3.58144 3.72656 3.80933 3.93738 3.99211 4.19297 4.27952 4.34042 4.36737 4.37869 4.40664 4.47827 4.54322 4.58824 4.61879 4.63544 4.67248 4.73682 4.79112 4.86600 4.92170 4.93472 5.02799 5.10553 5.15979 5.31562 5.54321 5.92543 6.04931 6.13314 6.58281 6.61906 6.90546 6.98639 7.42090 8.00404 8.77861 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020548 B = 0.002060 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.362701 B =13585.828684 C =14191.130213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.281 6.281 3 C -0.068 4.068 4 H 0.132 0.868 5 C -0.135 4.135 6 C 0.545 3.455 7 O -0.579 6.579 8 N -0.640 5.640 9 C 0.120 3.880 10 C -0.095 4.095 11 C 0.130 3.870 12 C -0.110 4.110 13 C 0.054 3.946 14 N -0.539 5.539 15 C 0.053 3.947 16 C 0.450 3.550 17 O -0.608 6.608 18 N -0.594 5.594 19 C -0.326 4.326 20 H 0.052 0.948 21 C -0.019 4.019 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.231 1.231 27 C 0.071 3.929 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.084 0.916 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.427 -4.087 19.948 35.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.056 6.056 3 C -0.200 4.200 4 H 0.150 0.850 5 C -0.194 4.194 6 C 0.334 3.666 7 O -0.459 6.459 8 N -0.375 5.375 9 C -0.003 4.003 10 C -0.096 4.096 11 C 0.009 3.991 12 C -0.149 4.149 13 C -0.074 4.074 14 N -0.264 5.264 15 C -0.079 4.079 16 C 0.237 3.763 17 O -0.492 6.492 18 N -0.236 5.236 19 C -0.455 4.455 20 H 0.071 0.929 21 C -0.217 4.217 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.179 1.179 25 H -0.202 1.202 26 H -0.154 1.154 27 C -0.056 4.056 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.229 -5.985 20.379 34.533 hybrid contribution -0.725 1.424 -1.101 1.941 sum -27.954 -4.561 19.278 34.262 Atomic orbital electron populations 1.23567 0.90825 1.07669 1.06439 1.87903 1.10243 1.09351 1.98113 1.23220 0.94552 0.96591 1.05598 0.84986 1.21980 1.03038 1.01634 0.92741 1.19948 0.89876 0.81271 0.75539 1.90739 1.62220 1.41555 1.51349 1.50221 1.10424 1.11596 1.65216 1.23078 0.85408 0.93886 0.97890 1.22292 0.97273 0.95646 0.94416 1.23368 0.96444 0.81460 0.97867 1.22556 0.98625 0.94945 0.98737 1.22702 0.99200 0.91685 0.93781 1.63111 1.34010 1.28538 1.00745 1.21999 0.92826 1.01799 0.91235 1.21004 0.92115 0.81221 0.81923 1.90549 1.36897 1.58267 1.63482 1.42040 1.08384 1.59910 1.13288 1.18978 0.87036 1.41429 0.98096 0.92938 1.26154 1.02294 0.95937 0.97298 1.69815 1.28297 1.43775 1.15858 0.85337 0.77580 0.80517 0.77900 1.17890 1.20240 1.15415 1.22642 0.91615 0.99227 0.92111 0.87189 0.88644 0.88970 0.92645 0.89176 0.88892 0.92442 0.87946 0.85623 0.86900 0.88748 0.87742 0.93373 0.93989 0.89424 0.86863 0.77515 0.91219 0.89746 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.45 113.37 1.18 0.26 16 2 S -0.28 -5.37 21.04 -56.49 -1.19 -6.56 16 3 C -0.07 -0.96 2.93 29.85 0.09 -0.87 16 4 H 0.13 1.11 8.11 -2.39 -0.02 1.09 16 5 C -0.14 -1.14 9.08 71.98 0.65 -0.48 16 6 C 0.54 12.16 7.23 87.66 0.63 12.79 16 7 O -0.58 -19.57 16.77 -3.02 -0.05 -19.62 16 8 N -0.64 -10.70 3.62 -863.26 -3.12 -13.83 16 9 C 0.12 2.27 8.14 85.91 0.70 2.97 16 10 C -0.09 -1.32 0.99 -52.15 -0.05 -1.38 16 11 C 0.13 0.91 7.96 85.91 0.68 1.59 16 12 C -0.11 -1.53 6.35 31.35 0.20 -1.34 16 13 C 0.05 1.45 5.67 86.72 0.49 1.94 16 14 N -0.54 -15.45 4.86 -891.48 -4.33 -19.78 16 15 C 0.05 1.56 5.03 85.56 0.43 1.99 16 16 C 0.45 20.25 7.43 87.66 0.65 20.90 16 17 O -0.61 -34.01 15.12 -3.07 -0.05 -34.06 16 18 N -0.59 -27.89 5.09 -306.98 -1.56 -29.45 16 19 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 20 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 21 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 22 N -0.94 -56.81 13.96 21.66 0.30 -56.51 16 23 Si 0.97 38.48 27.74 68.60 1.90 40.38 16 24 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 27 C 0.07 1.33 6.10 86.20 0.53 1.86 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.43 7.14 -2.39 -0.02 0.41 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.37 6.92 -2.39 -0.02 0.35 16 34 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 35 H 0.10 1.64 8.04 -2.39 -0.02 1.62 16 36 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.11 0.26 8.12 -2.39 -0.02 0.24 16 38 H 0.09 1.10 7.99 -2.39 -0.02 1.08 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.23 7.31 -2.39 -0.02 1.21 16 42 H 0.09 1.98 7.96 -2.39 -0.02 1.96 16 43 H 0.11 2.82 8.07 -2.39 -0.02 2.80 16 44 H 0.39 14.95 5.76 -92.71 -0.53 14.41 16 45 H 0.28 15.42 8.31 -92.71 -0.77 14.64 16 46 H 0.08 1.09 7.80 -2.39 -0.02 1.07 16 47 H 0.07 1.49 8.07 -2.39 -0.02 1.47 16 Total: -1.00 -91.55 394.04 -0.21 -91.76 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.38 Total: 26.34 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 7.51 Total: 21.32 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -8.71 Total: -119.56 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.10 Total: -53.68 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.38 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -1.19 Total: -6.56 kcal Total: -91.55 -0.21 -91.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147034026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.899 kcal (2) G-P(sol) polarization free energy of solvation -91.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds