Wall clock time and date at job start Wed Apr 1 2020 00:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47254 * 2 1 4 4 C 1.46907 * 110.99760 * 282.31652 * 3 2 1 5 5 C 1.50700 * 109.46768 * 76.81692 * 4 3 2 6 6 C 1.35453 * 128.00818 * 245.26182 * 5 4 3 7 7 O 1.34037 * 106.44964 * 179.97438 * 6 5 4 8 8 N 1.20919 * 111.56400 * 359.97438 * 7 6 5 9 9 C 1.30170 * 111.60961 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.80634 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00398 * 158.36505 * 3 2 1 12 12 H 1.08998 * 109.47012 * 174.08071 * 11 3 2 13 13 C 1.52992 * 109.47285 * 54.07840 * 11 3 2 14 14 C 1.52998 * 109.46816 * 294.07853 * 11 3 2 15 15 N 1.46500 * 109.47216 * 303.14991 * 14 11 3 16 16 C 1.34782 * 119.99948 * 180.02562 * 15 14 11 17 17 O 1.21280 * 120.00144 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99922 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.47012 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00043 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99860 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00278 * 179.97438 * 20 19 18 23 23 N 1.31636 * 119.99727 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00241 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46630 * 60.00541 * 24 22 20 26 26 H 1.48502 * 109.47101 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47173 * 300.00573 * 24 22 20 28 28 H 1.08993 * 109.46770 * 68.91713 * 1 2 3 29 29 H 1.09003 * 109.46919 * 188.91400 * 1 2 3 30 30 H 1.08997 * 109.47133 * 308.91746 * 1 2 3 31 31 H 1.09003 * 109.47363 * 239.99869 * 2 1 3 32 32 H 1.09004 * 109.47389 * 119.99802 * 2 1 3 33 33 H 1.08994 * 109.47383 * 316.82028 * 4 3 2 34 34 H 1.09004 * 109.46854 * 196.81314 * 4 3 2 35 35 H 1.08000 * 126.77131 * 359.95640 * 6 5 4 36 36 H 1.09005 * 109.47164 * 89.97180 * 10 9 8 37 37 H 1.08993 * 109.47687 * 209.97617 * 10 9 8 38 38 H 1.09009 * 109.47097 * 329.97853 * 10 9 8 39 39 H 1.09005 * 109.47076 * 60.00086 * 13 11 3 40 40 H 1.09000 * 109.47265 * 180.02562 * 13 11 3 41 41 H 1.09001 * 109.46976 * 300.00485 * 13 11 3 42 42 H 1.09001 * 109.47334 * 63.14441 * 14 11 3 43 43 H 1.08997 * 109.47430 * 183.14513 * 14 11 3 44 44 H 0.96999 * 120.00246 * 359.97438 * 15 14 11 45 45 H 1.09007 * 109.46873 * 299.99240 * 18 16 15 46 46 H 1.08996 * 109.47415 * 59.99511 * 18 16 15 47 47 H 0.97001 * 119.99749 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9194 1.9788 -1.3399 5 6 0.4866 2.3554 -1.6164 6 6 -0.3468 1.8372 -2.5501 7 8 -1.5135 2.4837 -2.4181 8 7 -1.4681 3.3064 -1.5331 9 6 -0.2993 3.3307 -0.9607 10 6 0.1311 4.2221 0.1757 11 6 3.3971 1.4565 0.5056 12 1 3.7716 2.4743 0.3971 13 6 4.2838 0.4989 -0.2928 14 6 3.4191 1.0598 1.9831 15 7 2.5118 1.9295 2.7359 16 6 2.3683 1.7638 4.0657 17 8 2.9899 0.8946 4.6392 18 6 1.4345 2.6581 4.8400 19 16 1.4607 2.1889 6.5879 20 6 0.3164 3.3612 7.2366 21 1 -0.1554 4.0762 6.5789 22 6 0.0206 3.3652 8.5927 23 7 0.5954 2.4935 9.3942 24 14 -1.1930 4.6076 9.2803 25 1 -2.5133 4.4243 8.6258 26 1 -1.3344 4.4034 10.7444 27 1 -0.6968 5.9822 9.0173 28 1 -0.3632 0.3697 -0.9588 29 1 -0.3633 -1.0153 0.1592 30 1 -0.3633 0.6456 0.7996 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2550 1.2562 -2.0837 34 1 2.5454 2.8697 -1.3903 35 1 -0.1164 1.0573 -3.2608 36 1 -0.0814 3.7293 1.1245 37 1 1.2006 4.4175 0.0993 38 1 -0.4149 5.1642 0.1254 39 1 4.2681 0.7815 -1.3455 40 1 5.3057 0.5516 0.0827 41 1 3.9092 -0.5189 -0.1843 42 1 3.0975 0.0234 2.0859 43 1 4.4314 1.1664 2.3729 44 1 2.0149 2.6250 2.2773 45 1 1.7554 3.6948 4.7369 46 1 0.4222 2.5507 4.4504 47 1 0.3889 2.4965 10.3420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151953715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:14 Heat of formation + Delta-G solvation = 27.904570 kcal Electronic energy + Delta-G solvation = -28078.089688 eV Core-core repulsion = 24197.831328 eV Total energy + Delta-G solvation = -3880.258360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.16633 -39.77805 -38.54683 -35.47331 -34.19428 -32.62430 -32.39208 -31.86674 -30.23789 -29.20191 -28.81767 -26.54715 -25.68686 -25.25917 -23.25694 -21.72437 -21.56021 -20.18744 -19.96100 -17.87537 -17.74825 -17.63421 -16.63424 -16.29698 -16.12572 -15.36426 -15.29253 -14.83906 -14.77240 -14.51996 -14.07699 -13.80090 -13.50078 -13.35678 -13.19803 -13.09015 -12.92952 -12.78121 -12.67826 -12.59133 -12.50888 -12.34918 -12.05501 -11.81279 -11.48334 -11.30497 -11.17937 -11.05322 -11.01021 -11.00503 -10.73558 -9.97979 -9.78646 -9.47836 -9.33199 -9.02825 -8.79277 -8.69814 -8.19401 -6.45692 -6.18264 -3.88305 1.23142 1.99569 3.00911 3.09390 3.19374 3.26150 3.30046 3.33952 3.48535 3.82657 4.03528 4.24197 4.31222 4.41519 4.42726 4.66516 4.77309 4.85756 4.89151 5.06264 5.12390 5.16761 5.16886 5.23404 5.24017 5.27440 5.34678 5.41868 5.43026 5.53643 5.57655 5.61376 5.62528 5.66104 5.74197 5.81541 5.93128 5.96334 5.99190 6.12341 6.20377 6.62690 6.68637 6.80049 7.62736 7.87064 8.09243 8.38517 8.72384 9.27048 10.89112 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.002831 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.718744 B = 9888.610321 C =11525.630689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 N -0.525 5.525 4 C 0.132 3.868 5 C -0.182 4.182 6 C -0.064 4.064 7 O 0.096 5.904 8 N -0.370 5.370 9 C 0.042 3.958 10 C -0.073 4.073 11 C 0.069 3.931 12 H 0.091 0.909 13 C -0.183 4.183 14 C 0.131 3.869 15 N -0.726 5.726 16 C 0.530 3.470 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.210 0.790 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.402 0.598 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -1.802 -28.666 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 N -0.250 5.250 4 C 0.004 3.996 5 C -0.187 4.187 6 C -0.146 4.146 7 O 0.032 5.968 8 N -0.076 5.076 9 C -0.117 4.117 10 C -0.130 4.130 11 C -0.040 4.040 12 H 0.109 0.891 13 C -0.242 4.242 14 C 0.006 3.994 15 N -0.380 5.380 16 C 0.316 3.684 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.227 0.773 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.237 0.763 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.745 -2.378 -27.015 27.377 hybrid contribution -0.467 1.185 -1.032 1.639 sum 3.278 -1.193 -28.047 28.263 Atomic orbital electron populations 1.21984 0.94864 1.01558 1.02645 1.22175 0.96235 0.88157 1.01044 1.62084 1.20496 1.19500 1.22874 1.20270 0.89976 0.99414 0.89930 1.21088 0.98933 0.99855 0.98799 1.25677 0.85634 1.00732 1.02588 1.84838 1.33006 1.37780 1.41194 1.73881 1.21529 1.09554 1.02618 1.23450 0.89405 0.99001 0.99865 1.20137 1.01801 0.97108 0.93977 1.22047 0.87402 1.00405 0.94119 0.89052 1.22410 1.01055 1.00469 1.00300 1.21303 0.94443 0.94920 0.88689 1.45798 1.46987 1.37575 1.07648 1.20282 0.82226 0.84347 0.81518 1.90693 1.46447 1.33844 1.68882 1.23506 1.00726 1.01624 1.04362 1.85370 1.58613 1.46676 0.92776 1.22835 1.29432 1.20063 0.96003 0.91014 1.24982 0.96449 0.96251 0.95864 1.70014 1.41286 1.34258 1.04817 0.86241 0.80759 0.80805 0.77809 1.19942 1.20840 1.19935 0.92616 0.92733 0.91838 0.94501 0.90308 0.93024 0.89483 0.77323 0.89605 0.90166 0.91022 0.92210 0.91404 0.91843 0.91695 0.91210 0.76291 0.89400 0.89383 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.33 37.16 0.35 -1.03 16 2 C 0.05 0.40 4.27 -3.82 -0.02 0.38 16 3 N -0.53 -3.66 3.91 -228.08 -0.89 -4.55 16 4 C 0.13 0.75 4.80 -4.97 -0.02 0.73 16 5 C -0.18 -1.36 3.94 -104.42 -0.41 -1.77 16 6 C -0.06 -0.42 10.16 29.74 0.30 -0.12 16 7 O 0.10 0.93 11.20 17.19 0.19 1.12 16 8 N -0.37 -4.28 12.07 33.42 0.40 -3.88 16 9 C 0.04 0.41 7.33 -82.10 -0.60 -0.19 16 10 C -0.07 -0.62 10.39 36.00 0.37 -0.25 16 11 C 0.07 0.47 2.42 -67.72 -0.16 0.31 16 12 H 0.09 0.56 7.82 -51.93 -0.41 0.15 16 13 C -0.18 -1.01 8.57 37.15 0.32 -0.69 16 14 C 0.13 1.39 4.94 -4.04 -0.02 1.37 16 15 N -0.73 -9.35 5.40 -60.29 -0.33 -9.68 16 16 C 0.53 9.81 7.85 -10.98 -0.09 9.73 16 17 O -0.52 -11.85 15.86 5.56 0.09 -11.76 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.05 0.46 4.39 -51.93 -0.23 0.23 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.24 7.12 -51.93 -0.37 -0.13 16 32 H 0.08 0.73 5.83 -51.93 -0.30 0.42 16 33 H 0.05 0.23 7.17 -51.93 -0.37 -0.14 16 34 H 0.09 0.44 7.72 -51.93 -0.40 0.04 16 35 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.27 7.19 -51.93 -0.37 -0.10 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.38 6.78 -51.93 -0.35 0.03 16 42 H 0.06 0.77 6.35 -51.93 -0.33 0.44 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.40 4.35 8.21 -40.82 -0.33 4.02 16 45 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -35.51 394.27 -7.90 -43.41 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.24 Total: -0.24 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 0.44 Total: -7.43 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.08 Total: -43.76 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.28 Total: -10.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.51 -7.90 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151953715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.316 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds