Wall clock time and date at job start Wed Apr 1 2020 00:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47254 * 2 1 4 4 C 1.46907 * 110.99760 * 282.31652 * 3 2 1 5 5 C 1.50700 * 109.46768 * 76.81692 * 4 3 2 6 6 C 1.35453 * 128.00818 * 245.26182 * 5 4 3 7 7 O 1.34037 * 106.44964 * 179.97438 * 6 5 4 8 8 N 1.20919 * 111.56400 * 359.97438 * 7 6 5 9 9 C 1.30170 * 111.60961 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.80634 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00398 * 158.36505 * 3 2 1 12 12 H 1.08998 * 109.47012 * 174.08071 * 11 3 2 13 13 C 1.52992 * 109.47285 * 54.07840 * 11 3 2 14 14 C 1.52998 * 109.46816 * 294.07853 * 11 3 2 15 15 N 1.46500 * 109.47216 * 303.14991 * 14 11 3 16 16 C 1.34782 * 119.99948 * 180.02562 * 15 14 11 17 17 O 1.21280 * 120.00144 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99922 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.47012 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00043 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99860 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00278 * 179.97438 * 20 19 18 23 23 N 1.31636 * 119.99727 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00241 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46630 * 60.00541 * 24 22 20 26 26 H 1.48502 * 109.47101 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47173 * 300.00573 * 24 22 20 28 28 H 1.08993 * 109.46770 * 68.91713 * 1 2 3 29 29 H 1.09003 * 109.46919 * 188.91400 * 1 2 3 30 30 H 1.08997 * 109.47133 * 308.91746 * 1 2 3 31 31 H 1.09003 * 109.47363 * 239.99869 * 2 1 3 32 32 H 1.09004 * 109.47389 * 119.99802 * 2 1 3 33 33 H 1.08994 * 109.47383 * 316.82028 * 4 3 2 34 34 H 1.09004 * 109.46854 * 196.81314 * 4 3 2 35 35 H 1.08000 * 126.77131 * 359.95640 * 6 5 4 36 36 H 1.09005 * 109.47164 * 89.97180 * 10 9 8 37 37 H 1.08993 * 109.47687 * 209.97617 * 10 9 8 38 38 H 1.09009 * 109.47097 * 329.97853 * 10 9 8 39 39 H 1.09005 * 109.47076 * 60.00086 * 13 11 3 40 40 H 1.09000 * 109.47265 * 180.02562 * 13 11 3 41 41 H 1.09001 * 109.46976 * 300.00485 * 13 11 3 42 42 H 1.09001 * 109.47334 * 63.14441 * 14 11 3 43 43 H 1.08997 * 109.47430 * 183.14513 * 14 11 3 44 44 H 0.96999 * 120.00246 * 359.97438 * 15 14 11 45 45 H 1.09007 * 109.46873 * 299.99240 * 18 16 15 46 46 H 1.08996 * 109.47415 * 59.99511 * 18 16 15 47 47 H 0.97001 * 119.99749 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9194 1.9788 -1.3399 5 6 0.4866 2.3554 -1.6164 6 6 -0.3468 1.8372 -2.5501 7 8 -1.5135 2.4837 -2.4181 8 7 -1.4681 3.3064 -1.5331 9 6 -0.2993 3.3307 -0.9607 10 6 0.1311 4.2221 0.1757 11 6 3.3971 1.4565 0.5056 12 1 3.7716 2.4743 0.3971 13 6 4.2838 0.4989 -0.2928 14 6 3.4191 1.0598 1.9831 15 7 2.5118 1.9295 2.7359 16 6 2.3683 1.7638 4.0657 17 8 2.9899 0.8946 4.6392 18 6 1.4345 2.6581 4.8400 19 16 1.4607 2.1889 6.5879 20 6 0.3164 3.3612 7.2366 21 1 -0.1554 4.0762 6.5789 22 6 0.0206 3.3652 8.5927 23 7 0.5954 2.4935 9.3942 24 14 -1.1930 4.6076 9.2803 25 1 -2.5133 4.4243 8.6258 26 1 -1.3344 4.4034 10.7444 27 1 -0.6968 5.9822 9.0173 28 1 -0.3632 0.3697 -0.9588 29 1 -0.3633 -1.0153 0.1592 30 1 -0.3633 0.6456 0.7996 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2550 1.2562 -2.0837 34 1 2.5454 2.8697 -1.3903 35 1 -0.1164 1.0573 -3.2608 36 1 -0.0814 3.7293 1.1245 37 1 1.2006 4.4175 0.0993 38 1 -0.4149 5.1642 0.1254 39 1 4.2681 0.7815 -1.3455 40 1 5.3057 0.5516 0.0827 41 1 3.9092 -0.5189 -0.1843 42 1 3.0975 0.0234 2.0859 43 1 4.4314 1.1664 2.3729 44 1 2.0149 2.6250 2.2773 45 1 1.7554 3.6948 4.7369 46 1 0.4222 2.5507 4.4504 47 1 0.3889 2.4965 10.3420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151953715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:12 Heat of formation + Delta-G solvation = 2.478878 kcal Electronic energy + Delta-G solvation = -28079.192229 eV Core-core repulsion = 24197.831328 eV Total energy + Delta-G solvation = -3881.360901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.82770 -40.78066 -39.60556 -36.24178 -35.18087 -34.57683 -33.42228 -32.52856 -31.22664 -30.29506 -29.49172 -27.72843 -27.12113 -26.31106 -23.91960 -22.37884 -22.15059 -21.60316 -20.62122 -19.74970 -18.50204 -18.28724 -17.69137 -17.37320 -17.25962 -16.87348 -16.23106 -16.14583 -15.87208 -15.74010 -15.11575 -14.77754 -14.52997 -14.31372 -14.20173 -14.04260 -13.94505 -13.67729 -13.41394 -13.31424 -13.17583 -13.15953 -13.11541 -12.97051 -12.86458 -12.69956 -12.61416 -12.18515 -11.89753 -11.83900 -11.74570 -11.63714 -11.12574 -10.89595 -10.66911 -10.26557 -10.05771 -9.96677 -9.26021 -8.64982 -8.34009 -6.11557 0.67673 1.28322 1.35613 1.43500 1.47321 1.58095 1.69575 2.27628 2.39019 2.52661 2.94039 2.99857 3.34984 3.43233 3.75776 3.77250 3.93257 4.04179 4.13889 4.22031 4.30706 4.31821 4.34715 4.49322 4.53213 4.63613 4.64959 4.67081 4.69185 4.71258 4.77580 4.81752 4.91148 4.94247 4.97743 5.08421 5.09244 5.17836 5.32118 5.36332 5.38202 5.42004 5.55805 6.14035 6.16425 6.20178 6.63771 7.07220 7.34893 7.48119 8.74977 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.002831 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.718744 B = 9888.610321 C =11525.630689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 N -0.536 5.536 4 C 0.135 3.865 5 C -0.187 4.187 6 C -0.053 4.053 7 O 0.081 5.919 8 N -0.411 5.411 9 C 0.027 3.973 10 C -0.072 4.072 11 C 0.082 3.918 12 H 0.109 0.891 13 C -0.178 4.178 14 C 0.128 3.872 15 N -0.697 5.697 16 C 0.531 3.469 17 O -0.571 6.571 18 C -0.128 4.128 19 S -0.149 6.149 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.261 1.261 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.250 0.750 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.416 0.584 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -0.829 -31.493 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 N -0.260 5.260 4 C 0.008 3.992 5 C -0.192 4.192 6 C -0.134 4.134 7 O 0.019 5.981 8 N -0.120 5.120 9 C -0.131 4.131 10 C -0.130 4.130 11 C -0.026 4.026 12 H 0.127 0.873 13 C -0.237 4.237 14 C 0.004 3.996 15 N -0.350 5.350 16 C 0.317 3.683 17 O -0.450 6.450 18 C -0.279 4.279 19 S 0.078 5.922 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.185 1.185 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.266 0.734 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.253 0.747 45 H 0.126 0.874 46 H 0.120 0.880 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.101 -1.388 -29.915 30.226 hybrid contribution -0.547 0.832 -0.303 1.041 sum 3.554 -0.556 -30.218 30.431 Atomic orbital electron populations 1.21939 0.96016 1.00736 1.01910 1.22079 0.95088 0.88771 1.01181 1.61981 1.20585 1.19122 1.24322 1.20360 0.88977 1.00455 0.89412 1.21303 0.99812 0.99334 0.98704 1.26445 0.84196 1.00302 1.02501 1.84785 1.34423 1.37928 1.40946 1.73879 1.22946 1.11169 1.04016 1.23798 0.89563 0.99671 1.00094 1.20161 1.02975 0.96568 0.93263 1.21938 0.87759 1.01701 0.91248 0.87299 1.22367 1.00571 0.99678 1.01095 1.21521 0.93263 0.93839 0.91022 1.45564 1.46320 1.37453 1.05700 1.19996 0.81667 0.83551 0.83105 1.90680 1.48385 1.35753 1.70211 1.23346 1.02298 1.02958 0.99302 1.85520 1.59209 1.48152 0.99324 1.23176 1.29503 1.20145 0.96721 0.90101 1.26103 0.98404 0.98361 0.96162 1.70179 1.43040 1.36318 1.05205 0.85035 0.78037 0.78105 0.77026 1.18869 1.20295 1.18547 0.91723 0.92941 0.94807 0.92315 0.92163 0.90705 0.88072 0.73415 0.90630 0.88145 0.91670 0.90163 0.91296 0.92378 0.92958 0.91658 0.74691 0.87387 0.88043 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.33 71.98 0.67 -1.82 16 2 C 0.06 0.75 4.27 86.30 0.37 1.11 16 3 N -0.54 -5.89 3.91 -875.51 -3.42 -9.31 16 4 C 0.14 0.99 4.80 85.56 0.41 1.40 16 5 C -0.19 -2.27 3.94 -19.73 -0.08 -2.35 16 6 C -0.05 -0.55 10.16 67.18 0.68 0.13 16 7 O 0.08 1.49 11.20 71.67 0.80 2.29 16 8 N -0.41 -9.39 12.07 -49.56 -0.60 -9.99 16 9 C 0.03 0.50 7.33 43.58 0.32 0.82 16 10 C -0.07 -1.16 10.39 71.23 0.74 -0.42 16 11 C 0.08 0.86 2.42 44.91 0.11 0.97 16 12 H 0.11 0.86 7.82 -2.39 -0.02 0.84 16 13 C -0.18 -1.32 8.57 71.98 0.62 -0.71 16 14 C 0.13 2.53 4.94 86.38 0.43 2.95 16 15 N -0.70 -17.14 5.40 -463.06 -2.50 -19.64 16 16 C 0.53 19.68 7.85 87.66 0.69 20.37 16 17 O -0.57 -26.56 15.86 -3.03 -0.05 -26.60 16 18 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.84 5.49 84.86 0.47 1.30 16 23 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 24 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 28 H 0.06 0.94 4.39 -2.39 -0.01 0.93 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.54 7.12 -2.39 -0.02 0.52 16 32 H 0.06 1.04 5.83 -2.38 -0.01 1.03 16 33 H 0.07 0.26 7.17 -2.39 -0.02 0.25 16 34 H 0.10 0.52 7.72 -2.38 -0.02 0.50 16 35 H 0.25 0.25 8.06 -2.91 -0.02 0.23 16 36 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.08 0.32 7.19 -2.38 -0.02 0.31 16 40 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.52 6.78 -2.39 -0.02 0.51 16 42 H 0.05 1.22 6.35 -2.39 -0.02 1.20 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.42 8.14 8.21 -92.71 -0.76 7.38 16 45 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 46 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 47 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -81.51 394.27 2.11 -79.39 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.22 Total: 15.57 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 6.51 Total: -12.11 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -6.23 Total: -95.27 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.75 Total: -24.31 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -81.51 2.11 -79.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151953715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.872 kcal (2) G-P(sol) polarization free energy of solvation -81.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds