Wall clock time and date at job start Wed Apr 1 2020 00:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47363 * 2 1 4 4 C 1.46894 * 110.99741 * 278.94062 * 3 2 1 5 5 C 1.50696 * 109.47366 * 88.95531 * 4 3 2 6 6 C 1.34330 * 126.16386 * 91.98271 * 5 4 3 7 7 O 1.34755 * 107.11541 * 179.97438 * 6 5 4 8 8 C 1.33967 * 107.75237 * 0.02562 * 7 6 5 9 9 C 1.50699 * 125.61728 * 180.02562 * 8 7 6 10 10 N 1.30253 * 108.76338 * 0.02562 * 8 7 6 11 11 C 1.46901 * 110.99998 * 154.98370 * 3 2 1 12 12 H 1.08997 * 109.46478 * 177.05078 * 11 3 2 13 13 C 1.53005 * 109.46965 * 57.05636 * 11 3 2 14 14 C 1.52997 * 109.47005 * 297.05744 * 11 3 2 15 15 N 1.46500 * 109.47192 * 301.22698 * 14 11 3 16 16 C 1.34773 * 119.99944 * 180.02562 * 15 14 11 17 17 O 1.21280 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99979 * 180.02562 * 16 15 14 19 19 S 1.80991 * 109.47000 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99873 * 179.97438 * 19 18 16 21 21 H 1.07992 * 119.99829 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99975 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00085 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47023 * 90.00285 * 24 22 20 26 26 H 1.48499 * 109.47215 * 210.00118 * 24 22 20 27 27 H 1.48506 * 109.47379 * 330.00399 * 24 22 20 28 28 H 1.08996 * 109.47398 * 186.75679 * 1 2 3 29 29 H 1.08996 * 109.47381 * 306.75848 * 1 2 3 30 30 H 1.09002 * 109.46703 * 66.75925 * 1 2 3 31 31 H 1.09002 * 109.47092 * 239.99186 * 2 1 3 32 32 H 1.09000 * 109.46884 * 119.99858 * 2 1 3 33 33 H 1.09001 * 109.47429 * 328.95721 * 4 3 2 34 34 H 1.09001 * 109.47201 * 208.95797 * 4 3 2 35 35 H 1.07998 * 126.44827 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47137 * 269.95814 * 9 8 7 37 37 H 1.08993 * 109.47432 * 29.95870 * 9 8 7 38 38 H 1.09006 * 109.47278 * 149.96124 * 9 8 7 39 39 H 1.08992 * 109.47097 * 179.97438 * 13 11 3 40 40 H 1.08999 * 109.47150 * 299.99858 * 13 11 3 41 41 H 1.09007 * 109.47214 * 59.99666 * 13 11 3 42 42 H 1.08993 * 109.47270 * 61.23089 * 14 11 3 43 43 H 1.09005 * 109.46675 * 181.22614 * 14 11 3 44 44 H 0.96995 * 119.99673 * 0.02562 * 15 14 11 45 45 H 1.09005 * 109.46656 * 299.99335 * 18 16 15 46 46 H 1.08993 * 109.47344 * 59.99193 * 18 16 15 47 47 H 0.97001 * 120.00100 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9943 1.9523 -1.3547 5 6 0.6531 2.5918 -1.6065 6 6 0.3346 3.8781 -1.3867 7 8 -0.9557 4.0336 -1.7428 8 6 -1.4066 2.8475 -2.1725 9 6 -2.8015 2.5662 -2.6686 10 7 -0.4407 1.9775 -2.0907 11 6 3.3669 1.4670 0.5799 12 1 3.7263 2.4943 0.5199 13 6 4.3133 0.5494 -0.1969 14 6 3.3191 1.0280 2.0448 15 7 2.3906 1.8882 2.7824 16 6 2.1867 1.6867 4.0993 17 8 2.7716 0.7929 4.6737 18 6 1.2311 2.5713 4.8579 19 16 1.1747 2.0520 6.5908 20 6 0.0178 3.2210 7.2230 21 1 -0.4158 3.9608 6.5665 22 6 -0.3372 3.1903 8.5645 23 7 0.1908 2.2882 9.3646 24 14 -1.5642 4.4291 9.2345 25 1 -2.9385 3.8793 9.1144 26 1 -1.2630 4.7012 10.6630 27 1 -1.4667 5.6917 8.4588 28 1 -0.3634 -1.0205 0.1209 29 1 -0.3634 0.6150 0.8233 30 1 -0.3633 0.4055 -0.9443 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1612 1.1595 -2.0839 34 1 2.7784 2.7035 -1.4489 35 1 0.9896 4.6440 -0.9985 36 1 -3.4305 2.2625 -1.8318 37 1 -3.2134 3.4664 -3.1246 38 1 -2.7697 1.7661 -3.4083 39 1 5.3129 0.6106 0.2331 40 1 3.9538 -0.4779 -0.1369 41 1 4.3473 0.8621 -1.2406 42 1 2.9805 -0.0064 2.1033 43 1 4.3147 1.1096 2.4812 44 1 1.9225 2.6028 2.3229 45 1 1.5692 3.6059 4.7991 46 1 0.2357 2.4890 4.4217 47 1 -0.0570 2.2670 10.3021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151954003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:07 Heat of formation + Delta-G solvation = -6.119687 kcal Electronic energy + Delta-G solvation = -27574.316266 eV Core-core repulsion = 23692.582504 eV Total energy + Delta-G solvation = -3881.733763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.55560 -39.65903 -38.43287 -35.36777 -34.14610 -32.73729 -32.38890 -32.01183 -30.37421 -29.22552 -27.86012 -26.34307 -25.54192 -25.14080 -23.11711 -21.88775 -21.26361 -20.14773 -19.82869 -17.77875 -17.38077 -17.03206 -16.48725 -16.21773 -16.07965 -15.44804 -15.04446 -14.79007 -14.76849 -14.55738 -14.14111 -13.91769 -13.62792 -13.45334 -13.16821 -13.05853 -12.97704 -12.83827 -12.68304 -12.57465 -12.47368 -12.21024 -11.98061 -11.72630 -11.42027 -11.27513 -11.07079 -11.03072 -10.98287 -10.83286 -10.72291 -10.18806 -9.76965 -9.30040 -9.03028 -8.98856 -8.72112 -8.62507 -8.17703 -6.44583 -6.17763 -3.87499 1.24145 2.32560 2.54455 3.11769 3.22418 3.25039 3.30781 3.36185 3.56727 3.77537 3.92154 4.24578 4.40381 4.48144 4.64128 4.75884 4.84471 4.95169 4.99420 5.01749 5.13138 5.17233 5.22603 5.24579 5.27782 5.33532 5.35818 5.45346 5.55046 5.59805 5.65109 5.68727 5.69377 5.79564 5.81962 5.93665 5.98427 6.02842 6.18240 6.22721 6.51233 6.73006 6.78418 6.88713 7.51918 7.63545 7.90610 8.39348 8.75612 9.27524 10.89710 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.002730 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.505928 B =10252.836919 C =12145.397185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.054 3.946 3 N -0.528 5.528 4 C 0.135 3.865 5 C 0.001 3.999 6 C -0.062 4.062 7 O -0.204 6.204 8 C 0.186 3.814 9 C -0.058 4.058 10 N -0.472 5.472 11 C 0.069 3.931 12 H 0.091 0.909 13 C -0.183 4.183 14 C 0.130 3.870 15 N -0.725 5.725 16 C 0.531 3.469 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.213 0.787 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.403 0.597 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 1.298 -29.262 29.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.073 4.073 3 N -0.252 5.252 4 C 0.007 3.993 5 C -0.119 4.119 6 C -0.133 4.133 7 O -0.090 6.090 8 C -0.021 4.021 9 C -0.115 4.115 10 N -0.203 5.203 11 C -0.040 4.040 12 H 0.109 0.891 13 C -0.243 4.243 14 C 0.005 3.995 15 N -0.380 5.380 16 C 0.317 3.683 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.229 0.771 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.237 0.763 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.192 -0.589 -27.996 28.088 hybrid contribution -0.990 2.405 -0.606 2.670 sum 1.202 1.817 -28.602 28.685 Atomic orbital electron populations 1.22106 0.94587 1.01076 1.04495 1.22200 0.96846 0.87624 1.00648 1.62032 1.22613 1.20734 1.19800 1.20316 0.90257 0.98658 0.90071 1.21496 0.96211 0.91314 1.02839 1.24713 0.83022 0.99955 1.05598 1.84448 1.25544 1.36366 1.62679 1.26257 0.98420 0.78467 0.98947 1.20247 0.85135 1.03817 1.02329 1.70158 0.99376 1.32238 1.18562 1.22085 0.87703 1.00403 0.93791 0.89105 1.22429 1.00623 1.00749 1.00462 1.21338 0.94055 0.95039 0.89038 1.45795 1.46806 1.36351 1.09018 1.20267 0.82147 0.84543 0.81390 1.90690 1.48683 1.32430 1.68123 1.23503 1.00493 1.01786 1.04392 1.85367 1.58244 1.44999 0.94865 1.22876 1.29295 1.18815 0.97250 0.90996 1.24987 0.96567 0.96241 0.95813 1.70023 1.41679 1.33229 1.05431 0.86178 0.80606 0.80670 0.78106 1.20291 1.20776 1.19706 0.93301 0.92733 0.89228 0.94468 0.90802 0.92126 0.89610 0.77086 0.88874 0.89490 0.88271 0.91433 0.91857 0.92166 0.91556 0.91196 0.76280 0.89436 0.89403 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.63 37.16 0.36 -1.54 16 2 C 0.05 0.55 4.28 -3.82 -0.02 0.53 16 3 N -0.53 -4.69 3.91 -228.09 -0.89 -5.58 16 4 C 0.14 1.05 4.61 -4.98 -0.02 1.03 16 5 C 0.00 0.01 5.90 -82.81 -0.49 -0.48 16 6 C -0.06 -0.53 12.08 29.35 0.35 -0.18 16 7 O -0.20 -2.01 10.78 5.35 0.06 -1.96 16 8 C 0.19 1.72 8.34 -12.95 -0.11 1.61 16 9 C -0.06 -0.30 10.51 36.01 0.38 0.08 16 10 N -0.47 -4.96 8.42 -7.36 -0.06 -5.02 16 11 C 0.07 0.56 2.32 -67.71 -0.16 0.40 16 12 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 13 C -0.18 -1.24 8.66 37.16 0.32 -0.91 16 14 C 0.13 1.52 4.91 -4.04 -0.02 1.50 16 15 N -0.73 -10.15 5.42 -60.30 -0.33 -10.48 16 16 C 0.53 10.27 7.85 -10.98 -0.09 10.18 16 17 O -0.52 -12.24 15.86 5.56 0.09 -12.16 16 18 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 24 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.05 4.54 -51.93 -0.24 0.81 16 31 H 0.04 0.35 7.11 -51.93 -0.37 -0.02 16 32 H 0.07 0.82 5.60 -51.93 -0.29 0.53 16 33 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 34 H 0.09 0.49 7.58 -51.93 -0.39 0.09 16 35 H 0.21 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.47 6.90 -51.93 -0.36 0.11 16 41 H 0.06 0.35 7.40 -51.92 -0.38 -0.04 16 42 H 0.07 0.87 6.14 -51.93 -0.32 0.55 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.40 4.87 8.27 -40.82 -0.34 4.53 16 45 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 46 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -36.44 395.53 -7.99 -44.44 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.25 Total: 1.78 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 0.93 Total: -3.93 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.55 Total: -46.91 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.15 Total: -14.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.44 -7.99 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.317 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds