Wall clock time and date at job start Wed Apr 1 2020 00:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47363 * 2 1 4 4 C 1.46894 * 110.99741 * 278.94062 * 3 2 1 5 5 C 1.50696 * 109.47366 * 88.95531 * 4 3 2 6 6 C 1.34330 * 126.16386 * 91.98271 * 5 4 3 7 7 O 1.34755 * 107.11541 * 179.97438 * 6 5 4 8 8 C 1.33967 * 107.75237 * 0.02562 * 7 6 5 9 9 C 1.50699 * 125.61728 * 180.02562 * 8 7 6 10 10 N 1.30253 * 108.76338 * 0.02562 * 8 7 6 11 11 C 1.46901 * 110.99998 * 154.98370 * 3 2 1 12 12 H 1.08997 * 109.46478 * 177.05078 * 11 3 2 13 13 C 1.53005 * 109.46965 * 57.05636 * 11 3 2 14 14 C 1.52997 * 109.47005 * 297.05744 * 11 3 2 15 15 N 1.46500 * 109.47192 * 301.22698 * 14 11 3 16 16 C 1.34773 * 119.99944 * 180.02562 * 15 14 11 17 17 O 1.21280 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99979 * 180.02562 * 16 15 14 19 19 S 1.80991 * 109.47000 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99873 * 179.97438 * 19 18 16 21 21 H 1.07992 * 119.99829 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99975 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00085 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47023 * 90.00285 * 24 22 20 26 26 H 1.48499 * 109.47215 * 210.00118 * 24 22 20 27 27 H 1.48506 * 109.47379 * 330.00399 * 24 22 20 28 28 H 1.08996 * 109.47398 * 186.75679 * 1 2 3 29 29 H 1.08996 * 109.47381 * 306.75848 * 1 2 3 30 30 H 1.09002 * 109.46703 * 66.75925 * 1 2 3 31 31 H 1.09002 * 109.47092 * 239.99186 * 2 1 3 32 32 H 1.09000 * 109.46884 * 119.99858 * 2 1 3 33 33 H 1.09001 * 109.47429 * 328.95721 * 4 3 2 34 34 H 1.09001 * 109.47201 * 208.95797 * 4 3 2 35 35 H 1.07998 * 126.44827 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47137 * 269.95814 * 9 8 7 37 37 H 1.08993 * 109.47432 * 29.95870 * 9 8 7 38 38 H 1.09006 * 109.47278 * 149.96124 * 9 8 7 39 39 H 1.08992 * 109.47097 * 179.97438 * 13 11 3 40 40 H 1.08999 * 109.47150 * 299.99858 * 13 11 3 41 41 H 1.09007 * 109.47214 * 59.99666 * 13 11 3 42 42 H 1.08993 * 109.47270 * 61.23089 * 14 11 3 43 43 H 1.09005 * 109.46675 * 181.22614 * 14 11 3 44 44 H 0.96995 * 119.99673 * 0.02562 * 15 14 11 45 45 H 1.09005 * 109.46656 * 299.99335 * 18 16 15 46 46 H 1.08993 * 109.47344 * 59.99193 * 18 16 15 47 47 H 0.97001 * 120.00100 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9943 1.9523 -1.3547 5 6 0.6531 2.5918 -1.6065 6 6 0.3346 3.8781 -1.3867 7 8 -0.9557 4.0336 -1.7428 8 6 -1.4066 2.8475 -2.1725 9 6 -2.8015 2.5662 -2.6686 10 7 -0.4407 1.9775 -2.0907 11 6 3.3669 1.4670 0.5799 12 1 3.7263 2.4943 0.5199 13 6 4.3133 0.5494 -0.1969 14 6 3.3191 1.0280 2.0448 15 7 2.3906 1.8882 2.7824 16 6 2.1867 1.6867 4.0993 17 8 2.7716 0.7929 4.6737 18 6 1.2311 2.5713 4.8579 19 16 1.1747 2.0520 6.5908 20 6 0.0178 3.2210 7.2230 21 1 -0.4158 3.9608 6.5665 22 6 -0.3372 3.1903 8.5645 23 7 0.1908 2.2882 9.3646 24 14 -1.5642 4.4291 9.2345 25 1 -2.9385 3.8793 9.1144 26 1 -1.2630 4.7012 10.6630 27 1 -1.4667 5.6917 8.4588 28 1 -0.3634 -1.0205 0.1209 29 1 -0.3634 0.6150 0.8233 30 1 -0.3633 0.4055 -0.9443 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1612 1.1595 -2.0839 34 1 2.7784 2.7035 -1.4489 35 1 0.9896 4.6440 -0.9985 36 1 -3.4305 2.2625 -1.8318 37 1 -3.2134 3.4664 -3.1246 38 1 -2.7697 1.7661 -3.4083 39 1 5.3129 0.6106 0.2331 40 1 3.9538 -0.4779 -0.1369 41 1 4.3473 0.8621 -1.2406 42 1 2.9805 -0.0064 2.1033 43 1 4.3147 1.1096 2.4812 44 1 1.9225 2.6028 2.3229 45 1 1.5692 3.6059 4.7991 46 1 0.2357 2.4890 4.4217 47 1 -0.0570 2.2670 10.3021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151954003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:03 Heat of formation + Delta-G solvation = -33.884627 kcal Electronic energy + Delta-G solvation = -27575.520245 eV Core-core repulsion = 23692.582504 eV Total energy + Delta-G solvation = -3882.937741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -44.20134 -40.80187 -39.56699 -36.18588 -35.22812 -34.58517 -33.39742 -32.90511 -31.31458 -30.49422 -28.46647 -27.74368 -27.06136 -26.10593 -23.94752 -22.55280 -21.91665 -21.63440 -20.62608 -19.75938 -18.05737 -17.76807 -17.67612 -17.33909 -17.24750 -16.88126 -16.24680 -16.15665 -16.01206 -15.67989 -15.20357 -14.77699 -14.67973 -14.49436 -14.23710 -14.12702 -13.87163 -13.70190 -13.51057 -13.40491 -13.18039 -13.16898 -13.15670 -12.92629 -12.88660 -12.78740 -12.59164 -12.19703 -12.03833 -11.81299 -11.71601 -11.53609 -11.14452 -10.99366 -10.92391 -10.27765 -10.00124 -9.61145 -9.33926 -8.66462 -8.34690 -6.12725 0.60999 1.27517 1.42169 1.47240 1.58036 1.65295 1.67710 1.98644 2.26909 2.36404 2.93460 2.99214 3.24010 3.34271 3.71078 3.79830 4.00894 4.10232 4.11118 4.20440 4.27360 4.31013 4.39396 4.50772 4.53171 4.57505 4.62589 4.65341 4.67618 4.69397 4.73840 4.82409 4.90319 4.96431 5.03336 5.05644 5.14296 5.19533 5.28316 5.35708 5.41402 5.51853 5.66909 6.07206 6.11960 6.19722 6.60102 6.87396 7.06359 7.31444 8.74660 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.002730 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.505928 B =10252.836919 C =12145.397185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.059 3.941 3 N -0.534 5.534 4 C 0.140 3.860 5 C -0.018 4.018 6 C -0.065 4.065 7 O -0.217 6.217 8 C 0.175 3.825 9 C -0.058 4.058 10 N -0.498 5.498 11 C 0.080 3.920 12 H 0.114 0.886 13 C -0.178 4.178 14 C 0.127 3.873 15 N -0.698 5.698 16 C 0.532 3.468 17 O -0.571 6.571 18 C -0.127 4.127 19 S -0.150 6.150 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.258 1.258 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.241 0.759 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.416 0.584 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 3.394 -31.314 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.068 4.068 3 N -0.259 5.259 4 C 0.012 3.988 5 C -0.137 4.137 6 C -0.135 4.135 7 O -0.104 6.104 8 C -0.032 4.032 9 C -0.115 4.115 10 N -0.230 5.230 11 C -0.028 4.028 12 H 0.132 0.868 13 C -0.238 4.238 14 C 0.003 3.997 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.450 6.450 18 C -0.278 4.278 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.182 1.182 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.257 0.743 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.253 0.747 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.961 1.525 -30.114 30.217 hybrid contribution -0.893 1.723 -0.104 1.943 sum 1.068 3.248 -30.219 30.411 Atomic orbital electron populations 1.22049 0.95812 1.00404 1.03453 1.22076 0.95709 0.88611 1.00413 1.61956 1.23084 1.19825 1.21000 1.20381 0.90332 0.99185 0.88923 1.21829 0.96653 0.91864 1.03343 1.25313 0.82838 1.00492 1.04876 1.84457 1.26265 1.36780 1.62921 1.27012 0.99479 0.78194 0.98513 1.20429 0.83352 1.04987 1.02702 1.70138 1.00223 1.33079 1.19536 1.22031 0.87753 1.01911 0.91093 0.86777 1.22385 1.00363 0.99832 1.01187 1.21537 0.93044 0.93948 0.91169 1.45567 1.46146 1.36263 1.07138 1.20008 0.81645 0.83763 0.82869 1.90679 1.50549 1.34312 1.69452 1.23338 1.01998 1.02974 0.99532 1.85535 1.58886 1.46687 1.01162 1.23201 1.29402 1.18901 0.97969 0.90097 1.26135 0.98603 0.98374 0.96030 1.70186 1.43388 1.35311 1.05897 0.84951 0.77577 0.77997 0.77438 1.19343 1.20149 1.18161 0.93501 0.95109 0.89138 0.93495 0.92171 0.92318 0.86827 0.74281 0.88407 0.87751 0.87412 0.90787 0.92783 0.90439 0.93036 0.91272 0.74714 0.87363 0.88099 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.63 71.98 0.69 -2.97 16 2 C 0.06 1.15 4.28 86.30 0.37 1.52 16 3 N -0.53 -8.35 3.91 -875.54 -3.42 -11.77 16 4 C 0.14 1.79 4.61 85.56 0.39 2.18 16 5 C -0.02 -0.30 5.90 41.26 0.24 -0.06 16 6 C -0.06 -0.97 12.08 66.93 0.81 -0.17 16 7 O -0.22 -4.00 10.78 -3.76 -0.04 -4.04 16 8 C 0.17 3.06 8.34 88.34 0.74 3.80 16 9 C -0.06 -0.53 10.51 71.24 0.75 0.22 16 10 N -0.50 -9.99 8.42 -291.99 -2.46 -12.45 16 11 C 0.08 1.08 2.32 44.92 0.10 1.19 16 12 H 0.11 1.11 7.88 -2.39 -0.02 1.09 16 13 C -0.18 -1.92 8.66 71.98 0.62 -1.29 16 14 C 0.13 2.80 4.91 86.38 0.42 3.23 16 15 N -0.70 -18.53 5.42 -463.07 -2.51 -21.04 16 16 C 0.53 20.46 7.85 87.66 0.69 21.14 16 17 O -0.57 -27.28 15.86 -3.03 -0.05 -27.33 16 18 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 19 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 20 C -0.55 -31.93 9.50 67.95 0.65 -31.28 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.79 13.22 21.65 0.29 -56.51 16 24 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 2.09 4.54 -2.39 -0.01 2.08 16 31 H 0.05 0.82 7.11 -2.39 -0.02 0.80 16 32 H 0.06 1.33 5.60 -2.39 -0.01 1.32 16 33 H 0.06 0.80 7.38 -2.39 -0.02 0.78 16 34 H 0.11 0.81 7.58 -2.39 -0.02 0.79 16 35 H 0.24 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 0.70 6.90 -2.39 -0.02 0.68 16 41 H 0.08 0.61 7.40 -2.38 -0.02 0.59 16 42 H 0.05 1.34 6.14 -2.39 -0.01 1.32 16 43 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 44 H 0.42 9.01 8.27 -92.71 -0.77 8.25 16 45 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 46 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 47 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -81.94 395.53 0.28 -81.66 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.22 Total: 21.04 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 7.38 Total: -6.11 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -8.10 Total: -101.77 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.09 Total: -31.36 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -81.94 0.28 -81.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.777 kcal (2) G-P(sol) polarization free energy of solvation -81.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds