Wall clock time and date at job start Wed Apr 1 2020 00:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.46893 * 2 1 4 4 C 1.46907 * 111.00013 * 172.57931 * 3 2 1 5 5 C 1.50701 * 109.47139 * 293.95723 * 4 3 2 6 6 O 1.34748 * 126.44243 * 269.97184 * 5 4 3 7 7 C 1.33974 * 107.75588 * 180.02562 * 6 5 4 8 8 N 1.30262 * 108.75856 * 0.02562 * 7 6 5 9 9 C 1.34336 * 126.44423 * 90.01054 * 5 4 3 10 10 C 1.50698 * 126.16411 * 359.97438 * 9 5 4 11 11 C 1.46899 * 111.00625 * 296.53517 * 3 2 1 12 12 H 1.09000 * 109.46616 * 48.34318 * 11 3 2 13 13 C 1.52995 * 109.46941 * 288.34661 * 11 3 2 14 14 C 1.52994 * 109.47414 * 168.34293 * 11 3 2 15 15 N 1.46494 * 109.47490 * 304.17622 * 14 11 3 16 16 C 1.34776 * 120.00203 * 174.93467 * 15 14 11 17 17 O 1.21276 * 119.99825 * 4.95557 * 16 15 14 18 18 C 1.50699 * 120.00107 * 184.95572 * 16 15 14 19 19 S 1.80997 * 109.47206 * 185.17810 * 18 16 15 20 20 C 1.76206 * 100.00000 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99882 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99769 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00397 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46732 * 90.00414 * 24 22 20 26 26 H 1.48500 * 109.47017 * 209.99781 * 24 22 20 27 27 H 1.48495 * 109.47110 * 330.00448 * 24 22 20 28 28 H 1.09003 * 109.47282 * 306.60684 * 1 2 3 29 29 H 1.09005 * 109.47132 * 66.60023 * 1 2 3 30 30 H 1.08995 * 109.47175 * 186.59854 * 1 2 3 31 31 H 1.08996 * 109.47215 * 240.00166 * 2 1 3 32 32 H 1.08994 * 109.46789 * 119.99911 * 2 1 3 33 33 H 1.08993 * 109.47165 * 173.95511 * 4 3 2 34 34 H 1.09003 * 109.46906 * 53.95329 * 4 3 2 35 35 H 1.07998 * 125.61762 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47151 * 89.99234 * 10 9 5 37 37 H 1.09000 * 109.47319 * 209.99780 * 10 9 5 38 38 H 1.08999 * 109.46991 * 329.99701 * 10 9 5 39 39 H 1.08997 * 109.47444 * 179.97438 * 13 11 3 40 40 H 1.09003 * 109.47559 * 299.99966 * 13 11 3 41 41 H 1.09005 * 109.47499 * 59.99516 * 13 11 3 42 42 H 1.09005 * 109.46826 * 64.18052 * 14 11 3 43 43 H 1.09006 * 109.46892 * 184.17596 * 14 11 3 44 44 H 0.97000 * 119.99761 * 354.93814 * 15 14 11 45 45 H 1.09004 * 109.47017 * 305.17772 * 18 16 15 46 46 H 1.09004 * 109.47047 * 65.17545 * 18 16 15 47 47 H 0.97005 * 120.00381 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4773 1.4281 0.1771 5 6 3.8315 0.9225 1.5519 6 8 3.9428 1.6623 2.6727 7 6 4.2720 0.8374 3.6757 8 7 4.3655 -0.3746 3.2077 9 6 4.0962 -0.3502 1.8905 10 6 4.0926 -1.5367 0.9614 11 6 1.6175 2.0856 -1.2269 12 1 0.5547 1.9231 -1.4063 13 6 2.4230 1.5452 -2.4101 14 6 1.8849 3.5838 -1.0696 15 7 1.1928 4.0810 0.1219 16 6 1.3675 5.3569 0.5195 17 8 2.0249 6.1184 -0.1577 18 6 0.7458 5.8373 1.8055 19 16 1.0290 7.6159 1.9851 20 6 0.2209 7.9005 3.5248 21 1 -0.2507 7.0809 4.0468 22 6 0.1913 9.1776 4.0674 23 7 0.7664 10.1764 3.4315 24 14 -0.6661 9.4794 5.6994 25 1 0.3045 9.2996 6.8090 26 1 -1.2006 10.8646 5.7290 27 1 -1.7833 8.5141 5.8576 28 1 -0.3634 0.6128 0.8250 29 1 -0.3634 0.4081 -0.9432 30 1 -0.3633 -1.0208 0.1181 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8266 2.4545 0.0663 34 1 3.9535 0.7990 -0.5750 35 1 4.4340 1.1294 4.7028 36 1 5.0878 -1.6688 0.5369 37 1 3.8125 -2.4320 1.5164 38 1 3.3748 -1.3674 0.1588 39 1 2.1244 2.0647 -3.3205 40 1 3.4858 1.7076 -2.2307 41 1 2.2325 0.4778 -2.5221 42 1 2.9567 3.7525 -0.9643 43 1 1.5186 4.1126 -1.9497 44 1 0.6089 3.4919 0.6249 45 1 -0.3261 5.6401 1.7867 46 1 1.1974 5.3107 2.6463 47 1 0.7454 11.0691 3.8105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151954213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:42 Heat of formation + Delta-G solvation = -7.988896 kcal Electronic energy + Delta-G solvation = -27981.107127 eV Core-core repulsion = 24099.292309 eV Total energy + Delta-G solvation = -3881.814818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.53949 -39.81451 -38.54250 -35.41536 -34.48843 -32.69144 -32.39236 -32.13095 -30.35647 -29.29228 -27.81921 -26.14288 -25.50488 -25.27945 -23.16546 -22.41320 -21.23188 -20.16964 -19.64433 -17.80504 -17.57162 -17.08625 -16.51796 -16.28386 -16.11083 -15.34961 -15.13805 -15.04163 -14.77127 -14.63663 -14.28347 -13.90883 -13.70608 -13.62995 -13.30421 -13.20712 -13.04005 -12.86498 -12.63960 -12.51579 -12.44480 -12.25913 -11.93377 -11.82467 -11.62523 -11.27501 -11.17826 -11.03512 -10.98617 -10.90361 -10.72686 -10.67994 -9.77288 -9.32138 -9.03663 -9.02387 -8.73040 -8.66955 -8.18222 -6.44885 -6.18036 -3.87760 1.22671 2.42262 2.58626 3.10787 3.19819 3.24753 3.30431 3.34994 3.49284 3.84583 3.94420 4.24370 4.37320 4.40782 4.50513 4.63165 4.68323 4.78560 4.85019 4.87642 5.07239 5.09631 5.17026 5.20133 5.21043 5.24952 5.27647 5.36352 5.38438 5.42186 5.60387 5.63598 5.66493 5.71022 5.75092 5.83189 5.87907 5.91949 5.98554 6.11302 6.23538 6.53178 6.60503 6.79026 7.52148 7.63380 7.88677 8.39162 8.73753 9.27338 10.89410 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002789 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.127496 B =10037.655605 C =11284.930204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.038 3.962 3 N -0.525 5.525 4 C 0.133 3.867 5 C -0.029 4.029 6 O -0.188 6.188 7 C 0.175 3.825 8 N -0.490 5.490 9 C -0.016 4.016 10 C -0.080 4.080 11 C 0.065 3.935 12 H 0.099 0.901 13 C -0.186 4.186 14 C 0.130 3.870 15 N -0.725 5.725 16 C 0.532 3.468 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.249 0.751 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.403 0.597 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 -26.261 -8.887 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 N -0.250 5.250 4 C 0.005 3.995 5 C -0.083 4.083 6 O -0.073 6.073 7 C -0.052 4.052 8 N -0.219 5.219 9 C -0.136 4.136 10 C -0.137 4.137 11 C -0.043 4.043 12 H 0.117 0.883 13 C -0.246 4.246 14 C 0.005 3.995 15 N -0.380 5.380 16 C 0.318 3.682 17 O -0.399 6.399 18 C -0.301 4.301 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.265 0.735 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.238 0.762 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.629 -25.004 -9.302 27.077 hybrid contribution -1.197 -0.801 1.375 1.991 sum 3.431 -25.805 -7.928 27.213 Atomic orbital electron populations 1.21839 0.94471 1.02037 1.02553 1.22417 0.96518 0.88720 1.01238 1.62150 1.10577 1.15655 1.36615 1.20463 0.89065 1.02979 0.86973 1.22933 1.06410 0.90220 0.88778 1.84518 1.65876 1.39996 1.16897 1.28050 0.98991 0.83059 0.95071 1.70351 1.19305 1.22983 1.09265 1.21450 1.05639 0.94893 0.91653 1.20324 1.02775 0.94016 0.96561 1.22092 1.01095 0.93405 0.87694 0.88267 1.22407 1.01118 1.01723 0.99310 1.21298 0.97761 0.91387 0.89035 1.45772 1.50179 1.12426 1.29609 1.20266 0.80207 0.81126 0.86622 1.90688 1.39775 1.54252 1.55212 1.23501 1.03150 1.06559 0.96919 1.85354 1.73965 0.95392 1.28840 1.22871 1.40981 0.97199 1.07118 0.90982 1.24984 0.95434 0.95017 0.98167 1.70020 1.41630 1.00507 1.38224 0.86182 0.79473 0.77669 0.82258 1.20290 1.20788 1.19701 0.91460 0.92549 0.92125 0.94213 0.89917 0.88192 0.90919 0.73526 0.90878 0.90513 0.90529 0.91075 0.91836 0.91883 0.91728 0.91209 0.76237 0.89608 0.89176 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.62 37.16 0.36 -0.60 16 2 C 0.04 0.26 4.04 -3.82 -0.02 0.24 16 3 N -0.53 -4.22 4.01 -228.09 -0.91 -5.14 16 4 C 0.13 1.15 4.09 -4.97 -0.02 1.13 16 5 C -0.03 -0.31 6.29 -35.68 -0.22 -0.54 16 6 O -0.19 -2.32 10.78 5.35 0.06 -2.26 16 7 C 0.17 1.80 13.23 52.10 0.69 2.48 16 8 N -0.49 -5.70 11.29 -11.17 -0.13 -5.83 16 9 C -0.02 -0.16 6.17 -82.81 -0.51 -0.67 16 10 C -0.08 -0.56 9.42 36.00 0.34 -0.22 16 11 C 0.07 0.49 2.30 -67.72 -0.16 0.33 16 12 H 0.10 0.69 6.04 -51.93 -0.31 0.37 16 13 C -0.19 -1.06 8.43 37.15 0.31 -0.75 16 14 C 0.13 1.43 4.93 -4.05 -0.02 1.41 16 15 N -0.73 -9.87 5.36 -60.30 -0.32 -10.19 16 16 C 0.53 10.12 7.84 -10.99 -0.09 10.04 16 17 O -0.52 -12.03 15.88 5.56 0.09 -11.94 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.91 16 19 S -0.06 -1.71 20.58 -107.50 -2.21 -3.93 16 20 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 24 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.32 6.58 -51.93 -0.34 -0.02 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.21 5.96 -51.93 -0.31 -0.09 16 32 H 0.08 0.65 4.95 -51.93 -0.26 0.39 16 33 H 0.10 1.01 6.24 -51.93 -0.32 0.68 16 34 H 0.07 0.48 6.48 -51.93 -0.34 0.15 16 35 H 0.25 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.42 4.82 -51.93 -0.25 0.17 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 41 H 0.06 0.30 6.69 -51.93 -0.35 -0.04 16 42 H 0.06 0.78 6.60 -51.93 -0.34 0.44 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.40 4.77 8.26 -40.82 -0.34 4.43 16 45 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 46 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -36.64 387.98 -7.64 -44.27 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.85 Total: 1.44 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 1.09 Total: -3.16 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.63 Total: -46.87 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.15 Total: -14.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.64 -7.64 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.283 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds