Wall clock time and date at job start Wed Apr 1 2020 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.46893 * 2 1 4 4 C 1.46907 * 111.00013 * 172.57931 * 3 2 1 5 5 C 1.50701 * 109.47139 * 293.95723 * 4 3 2 6 6 O 1.34748 * 126.44243 * 269.97184 * 5 4 3 7 7 C 1.33974 * 107.75588 * 180.02562 * 6 5 4 8 8 N 1.30262 * 108.75856 * 0.02562 * 7 6 5 9 9 C 1.34336 * 126.44423 * 90.01054 * 5 4 3 10 10 C 1.50698 * 126.16411 * 359.97438 * 9 5 4 11 11 C 1.46899 * 111.00625 * 296.53517 * 3 2 1 12 12 H 1.09000 * 109.46616 * 48.34318 * 11 3 2 13 13 C 1.52995 * 109.46941 * 288.34661 * 11 3 2 14 14 C 1.52994 * 109.47414 * 168.34293 * 11 3 2 15 15 N 1.46494 * 109.47490 * 304.17622 * 14 11 3 16 16 C 1.34776 * 120.00203 * 174.93467 * 15 14 11 17 17 O 1.21276 * 119.99825 * 4.95557 * 16 15 14 18 18 C 1.50699 * 120.00107 * 184.95572 * 16 15 14 19 19 S 1.80997 * 109.47206 * 185.17810 * 18 16 15 20 20 C 1.76206 * 100.00000 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99882 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99769 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00397 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46732 * 90.00414 * 24 22 20 26 26 H 1.48500 * 109.47017 * 209.99781 * 24 22 20 27 27 H 1.48495 * 109.47110 * 330.00448 * 24 22 20 28 28 H 1.09003 * 109.47282 * 306.60684 * 1 2 3 29 29 H 1.09005 * 109.47132 * 66.60023 * 1 2 3 30 30 H 1.08995 * 109.47175 * 186.59854 * 1 2 3 31 31 H 1.08996 * 109.47215 * 240.00166 * 2 1 3 32 32 H 1.08994 * 109.46789 * 119.99911 * 2 1 3 33 33 H 1.08993 * 109.47165 * 173.95511 * 4 3 2 34 34 H 1.09003 * 109.46906 * 53.95329 * 4 3 2 35 35 H 1.07998 * 125.61762 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47151 * 89.99234 * 10 9 5 37 37 H 1.09000 * 109.47319 * 209.99780 * 10 9 5 38 38 H 1.08999 * 109.46991 * 329.99701 * 10 9 5 39 39 H 1.08997 * 109.47444 * 179.97438 * 13 11 3 40 40 H 1.09003 * 109.47559 * 299.99966 * 13 11 3 41 41 H 1.09005 * 109.47499 * 59.99516 * 13 11 3 42 42 H 1.09005 * 109.46826 * 64.18052 * 14 11 3 43 43 H 1.09006 * 109.46892 * 184.17596 * 14 11 3 44 44 H 0.97000 * 119.99761 * 354.93814 * 15 14 11 45 45 H 1.09004 * 109.47017 * 305.17772 * 18 16 15 46 46 H 1.09004 * 109.47047 * 65.17545 * 18 16 15 47 47 H 0.97005 * 120.00381 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4773 1.4281 0.1771 5 6 3.8315 0.9225 1.5519 6 8 3.9428 1.6623 2.6727 7 6 4.2720 0.8374 3.6757 8 7 4.3655 -0.3746 3.2077 9 6 4.0962 -0.3502 1.8905 10 6 4.0926 -1.5367 0.9614 11 6 1.6175 2.0856 -1.2269 12 1 0.5547 1.9231 -1.4063 13 6 2.4230 1.5452 -2.4101 14 6 1.8849 3.5838 -1.0696 15 7 1.1928 4.0810 0.1219 16 6 1.3675 5.3569 0.5195 17 8 2.0249 6.1184 -0.1577 18 6 0.7458 5.8373 1.8055 19 16 1.0290 7.6159 1.9851 20 6 0.2209 7.9005 3.5248 21 1 -0.2507 7.0809 4.0468 22 6 0.1913 9.1776 4.0674 23 7 0.7664 10.1764 3.4315 24 14 -0.6661 9.4794 5.6994 25 1 0.3045 9.2996 6.8090 26 1 -1.2006 10.8646 5.7290 27 1 -1.7833 8.5141 5.8576 28 1 -0.3634 0.6128 0.8250 29 1 -0.3634 0.4081 -0.9432 30 1 -0.3633 -1.0208 0.1181 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8266 2.4545 0.0663 34 1 3.9535 0.7990 -0.5750 35 1 4.4340 1.1294 4.7028 36 1 5.0878 -1.6688 0.5369 37 1 3.8125 -2.4320 1.5164 38 1 3.3748 -1.3674 0.1588 39 1 2.1244 2.0647 -3.3205 40 1 3.4858 1.7076 -2.2307 41 1 2.2325 0.4778 -2.5221 42 1 2.9567 3.7525 -0.9643 43 1 1.5186 4.1126 -1.9497 44 1 0.6089 3.4919 0.6249 45 1 -0.3261 5.6401 1.7867 46 1 1.1974 5.3107 2.6463 47 1 0.7454 11.0691 3.8105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151954213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:38 Heat of formation + Delta-G solvation = -37.128306 kcal Electronic energy + Delta-G solvation = -27982.370706 eV Core-core repulsion = 24099.292309 eV Total energy + Delta-G solvation = -3883.078397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.32382 -40.83355 -39.68023 -36.23095 -35.60139 -34.58245 -33.49219 -32.85840 -31.16343 -30.59542 -28.43070 -27.73670 -26.88097 -26.12317 -23.79891 -23.17972 -21.98956 -21.62046 -20.37178 -19.73952 -18.29220 -17.98407 -17.65906 -17.30042 -17.22465 -16.87770 -16.38134 -16.12663 -15.95605 -15.69560 -15.44831 -14.92044 -14.63379 -14.45995 -14.37065 -14.17958 -14.11210 -13.74507 -13.65940 -13.37147 -13.16183 -13.14948 -12.96082 -12.90529 -12.86054 -12.58856 -12.46757 -12.32553 -12.02360 -11.86615 -11.71338 -11.50608 -11.43936 -11.14091 -10.92074 -10.27642 -10.00913 -9.71729 -9.28484 -8.65725 -8.34314 -6.12110 0.46372 1.27934 1.42298 1.47449 1.58270 1.65672 1.67465 1.88613 2.27166 2.37557 2.87349 2.99577 3.31055 3.34392 3.67914 3.75691 3.84132 3.98991 4.06432 4.08690 4.21078 4.27659 4.30425 4.33098 4.50477 4.51986 4.58692 4.62113 4.65214 4.71139 4.75049 4.82499 4.85209 4.87074 5.05271 5.12725 5.15798 5.17588 5.26626 5.40646 5.41841 5.43181 5.52027 5.96019 6.05238 6.20138 6.59953 6.74833 7.06826 7.31390 8.74967 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002789 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.127496 B =10037.655605 C =11284.930204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 N -0.538 5.538 4 C 0.137 3.863 5 C -0.046 4.046 6 O -0.214 6.214 7 C 0.172 3.828 8 N -0.517 5.517 9 C -0.020 4.020 10 C -0.078 4.078 11 C 0.077 3.923 12 H 0.112 0.888 13 C -0.182 4.182 14 C 0.126 3.874 15 N -0.699 5.699 16 C 0.533 3.467 17 O -0.570 6.570 18 C -0.127 4.127 19 S -0.148 6.148 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.258 1.258 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.280 0.720 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.415 0.585 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 -28.831 -8.865 30.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 N -0.263 5.263 4 C 0.010 3.990 5 C -0.100 4.100 6 O -0.100 6.100 7 C -0.054 4.054 8 N -0.247 5.247 9 C -0.140 4.140 10 C -0.134 4.134 11 C -0.031 4.031 12 H 0.130 0.870 13 C -0.241 4.241 14 C 0.002 3.998 15 N -0.352 5.352 16 C 0.318 3.682 17 O -0.449 6.449 18 C -0.278 4.278 19 S 0.079 5.921 20 C -0.694 4.694 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.182 1.182 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.295 0.705 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.252 0.748 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.509 -27.648 -9.298 29.380 hybrid contribution -0.824 -0.126 1.326 1.566 sum 2.685 -27.773 -7.972 29.019 Atomic orbital electron populations 1.21829 0.94111 1.02433 1.02345 1.22415 0.96699 0.87769 1.01655 1.62085 1.10272 1.16857 1.37081 1.20469 0.89678 1.02250 0.86602 1.23335 1.07094 0.90455 0.89087 1.84510 1.66497 1.41142 1.17891 1.28853 0.97886 0.82685 0.95942 1.70373 1.20384 1.23689 1.10232 1.21935 1.04736 0.95760 0.91611 1.20432 1.03913 0.92680 0.96412 1.21998 1.02162 0.90568 0.88346 0.87022 1.22377 1.00659 1.02725 0.98363 1.21529 0.96782 0.94045 0.87424 1.45557 1.49205 1.10475 1.29953 1.19977 0.79844 0.82501 0.85842 1.90675 1.41993 1.55858 1.56348 1.23338 1.04667 1.01221 0.98620 1.85503 1.74783 1.02181 1.29646 1.23193 1.41101 0.97914 1.07212 0.90161 1.26121 0.95984 0.94550 1.02450 1.70181 1.43091 1.01111 1.40376 0.84960 0.78485 0.77885 0.76687 1.19312 1.20163 1.18234 0.93058 0.91648 0.91163 0.92105 0.91045 0.90089 0.88613 0.70491 0.89875 0.90497 0.88742 0.90600 0.91933 0.90075 0.92793 0.91286 0.74841 0.87632 0.88100 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.62 71.98 0.69 -0.80 16 2 C 0.04 0.44 4.04 86.30 0.35 0.79 16 3 N -0.54 -7.54 4.01 -875.55 -3.51 -11.05 16 4 C 0.14 2.20 4.09 85.56 0.35 2.55 16 5 C -0.05 -0.96 6.29 24.79 0.16 -0.80 16 6 O -0.21 -5.29 10.78 -3.75 -0.04 -5.33 16 7 C 0.17 3.47 13.23 130.48 1.73 5.20 16 8 N -0.52 -11.74 11.29 -304.05 -3.43 -15.17 16 9 C -0.02 -0.40 6.17 41.26 0.25 -0.14 16 10 C -0.08 -0.93 9.42 71.24 0.67 -0.26 16 11 C 0.08 0.96 2.30 44.91 0.10 1.07 16 12 H 0.11 1.18 6.04 -2.39 -0.01 1.16 16 13 C -0.18 -1.52 8.43 71.98 0.61 -0.91 16 14 C 0.13 2.64 4.93 86.38 0.43 3.07 16 15 N -0.70 -18.36 5.36 -463.08 -2.48 -20.84 16 16 C 0.53 20.36 7.84 87.66 0.69 21.05 16 17 O -0.57 -26.88 15.88 -3.02 -0.05 -26.93 16 18 C -0.13 -5.29 6.16 71.24 0.44 -4.86 16 19 S -0.15 -8.43 20.58 -56.49 -1.16 -9.59 16 20 C -0.55 -31.84 9.50 67.95 0.65 -31.20 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 24 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.53 6.58 -2.38 -0.02 0.52 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.41 5.96 -2.39 -0.01 0.39 16 32 H 0.07 0.96 4.95 -2.39 -0.01 0.95 16 33 H 0.08 1.61 6.24 -2.39 -0.01 1.59 16 34 H 0.10 1.04 6.48 -2.39 -0.02 1.03 16 35 H 0.28 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.75 4.82 -2.39 -0.01 0.74 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.56 6.54 -2.39 -0.02 0.54 16 41 H 0.08 0.43 6.69 -2.38 -0.02 0.42 16 42 H 0.05 1.29 6.60 -2.38 -0.02 1.28 16 43 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.41 9.11 8.26 -92.71 -0.77 8.34 16 45 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 46 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 47 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -82.29 387.98 -0.55 -82.84 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.24 Total: 20.19 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 7.57 Total: -4.00 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -9.14 Total: -103.40 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.09 Total: -32.25 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -82.29 -0.55 -82.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151954213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.716 kcal (2) G-P(sol) polarization free energy of solvation -82.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds