Wall clock time and date at job start Wed Apr 1 2020 00:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46894 * 109.47440 * 2 1 4 4 C 1.46900 * 110.99774 * 297.88383 * 3 2 1 5 5 C 1.50698 * 109.47374 * 297.04085 * 4 3 2 6 6 C 1.41375 * 126.80057 * 95.32733 * 5 4 3 7 7 C 1.35448 * 103.98844 * 180.02562 * 6 5 4 8 8 C 1.50702 * 126.78139 * 179.97438 * 7 6 5 9 9 O 1.34039 * 106.44396 * 0.02562 * 7 6 5 10 10 N 1.20920 * 111.56869 * 359.70894 * 9 7 6 11 11 C 1.46896 * 111.00152 * 61.83635 * 3 2 1 12 12 H 1.08997 * 109.47461 * 294.30942 * 11 3 2 13 13 C 1.52999 * 109.47509 * 174.30946 * 11 3 2 14 14 C 1.53002 * 109.47054 * 54.30703 * 11 3 2 15 15 N 1.46504 * 109.47009 * 54.29905 * 14 11 3 16 16 C 1.34773 * 119.99938 * 184.55921 * 15 14 11 17 17 O 1.21282 * 120.00002 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99829 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.46961 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99973 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00312 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00503 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99601 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47370 * 89.99955 * 24 22 20 26 26 H 1.48507 * 109.47097 * 209.99913 * 24 22 20 27 27 H 1.48503 * 109.47522 * 329.99852 * 24 22 20 28 28 H 1.09002 * 109.47507 * 182.51442 * 1 2 3 29 29 H 1.08999 * 109.47435 * 302.51816 * 1 2 3 30 30 H 1.09004 * 109.47272 * 62.51885 * 1 2 3 31 31 H 1.09001 * 109.47107 * 239.99785 * 2 1 3 32 32 H 1.09001 * 109.47356 * 120.00333 * 2 1 3 33 33 H 1.09005 * 109.47385 * 177.04276 * 4 3 2 34 34 H 1.08996 * 109.47272 * 57.04343 * 4 3 2 35 35 H 1.07998 * 128.00955 * 0.04600 * 6 5 4 36 36 H 1.08999 * 109.47168 * 89.99925 * 8 7 6 37 37 H 1.08996 * 109.47247 * 210.00365 * 8 7 6 38 38 H 1.09002 * 109.46792 * 330.00202 * 8 7 6 39 39 H 1.09003 * 109.47273 * 299.99945 * 13 11 3 40 40 H 1.09000 * 109.47315 * 59.99871 * 13 11 3 41 41 H 1.09002 * 109.47635 * 180.02562 * 13 11 3 42 42 H 1.08998 * 109.47201 * 174.29251 * 14 11 3 43 43 H 1.08988 * 109.47393 * 294.29672 * 14 11 3 44 44 H 0.96999 * 119.99750 * 4.55763 * 15 14 11 45 45 H 1.09001 * 109.47085 * 299.99703 * 18 16 15 46 46 H 1.08994 * 109.47290 * 60.00114 * 18 16 15 47 47 H 0.96996 * 119.99943 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5904 2.0950 -1.2122 5 6 2.1951 1.4325 -2.4232 6 6 1.5893 0.4539 -3.2442 7 6 2.5291 0.1859 -4.1820 8 6 2.4138 -0.7946 -5.3206 9 8 3.5825 0.9641 -3.8967 10 7 3.3770 1.6510 -2.9230 11 6 1.5849 2.0970 1.2090 12 1 0.4998 2.2000 1.1997 13 6 2.2284 3.4847 1.2428 14 6 2.0115 1.3066 2.4476 15 7 3.4529 1.0508 2.3911 16 6 4.0395 0.2880 3.3347 17 8 3.3741 -0.1862 4.2310 18 6 5.5223 0.0253 3.2768 19 16 6.0040 -1.0240 4.6708 20 6 7.7329 -1.1672 4.3628 21 1 8.1720 -0.6736 3.5084 22 6 8.5309 -1.9135 5.2188 23 7 9.8226 -2.0201 4.9891 24 14 7.7716 -2.7667 6.6970 25 1 7.3380 -4.1335 6.3109 26 1 8.7761 -2.8556 7.7872 27 1 6.5973 -1.9894 7.1681 28 1 -0.3634 -1.0267 0.0451 29 1 -0.3634 0.5524 0.8665 30 1 -0.3634 0.4742 -0.9117 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9216 3.1323 -1.1622 34 1 0.5034 2.0639 -1.2859 35 1 0.6049 0.0206 -3.1465 36 1 1.9998 -0.2904 -6.1938 37 1 3.4010 -1.1884 -5.5624 38 1 1.7571 -1.6143 -5.0291 39 1 3.3136 3.3818 1.2522 40 1 1.9245 4.0478 0.3604 41 1 1.9062 4.0130 2.1402 42 1 1.7797 1.8823 3.3437 43 1 1.4751 0.3584 2.4761 44 1 3.9851 1.4304 1.6744 45 1 5.7657 -0.4792 2.3417 46 1 6.0613 0.9712 3.3304 47 1 10.3802 -2.5413 5.5876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151965054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:21 Heat of formation + Delta-G solvation = 29.750208 kcal Electronic energy + Delta-G solvation = -27584.087242 eV Core-core repulsion = 23703.908914 eV Total energy + Delta-G solvation = -3880.178327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -45.17924 -39.95653 -38.58028 -35.23516 -34.01808 -33.48300 -32.39358 -32.14137 -30.28303 -29.04457 -28.14405 -27.13035 -25.75034 -25.43454 -23.50278 -23.06869 -20.67948 -20.38802 -19.32744 -17.92293 -17.81830 -17.45539 -16.81213 -16.43520 -16.03669 -15.53572 -15.16411 -14.96621 -14.89866 -14.57243 -14.15588 -13.92176 -13.67744 -13.61425 -13.42625 -13.21820 -13.10582 -12.93363 -12.81022 -12.74508 -12.54975 -12.30517 -11.98518 -11.87184 -11.59672 -11.43507 -11.22204 -11.07219 -10.97138 -10.92866 -10.54109 -10.36888 -9.81517 -9.59997 -9.43766 -8.96415 -8.82006 -8.67796 -8.44056 -6.85859 -6.24233 -3.95204 1.20051 1.88589 2.82556 2.84818 3.08736 3.34881 3.37932 3.53626 3.54876 3.79390 3.86465 4.14126 4.37323 4.41638 4.61597 4.68619 4.70664 4.80357 4.82180 4.83398 4.93423 4.95346 4.95555 5.06749 5.10582 5.14732 5.16714 5.34211 5.37215 5.42856 5.47082 5.52846 5.56095 5.61335 5.64755 5.71876 5.76839 5.87066 5.93271 5.97530 6.12165 6.57132 6.65337 6.76306 7.79620 7.99137 8.04766 8.47387 8.61874 9.22065 10.85164 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.002541 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.829462 B =11015.873539 C =12229.820477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.042 3.958 3 N -0.523 5.523 4 C 0.126 3.874 5 C 0.028 3.972 6 C -0.234 4.234 7 C -0.033 4.033 8 C -0.075 4.075 9 O 0.101 5.899 10 N -0.345 5.345 11 C 0.068 3.932 12 H 0.061 0.939 13 C -0.150 4.150 14 C 0.129 3.871 15 N -0.723 5.723 16 C 0.530 3.470 17 O -0.527 6.527 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.406 0.594 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.635 8.270 -20.526 31.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.086 4.086 3 N -0.248 5.248 4 C -0.002 4.002 5 C -0.132 4.132 6 C -0.256 4.256 7 C -0.096 4.096 8 C -0.133 4.133 9 O 0.033 5.967 10 N -0.048 5.048 11 C -0.040 4.040 12 H 0.079 0.921 13 C -0.207 4.207 14 C 0.004 3.996 15 N -0.378 5.378 16 C 0.315 3.685 17 O -0.402 6.402 18 C -0.273 4.273 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.184 0.816 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.242 0.758 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.035 8.225 -18.634 30.007 hybrid contribution -0.665 -0.192 -0.841 1.089 sum -22.700 8.033 -19.475 30.969 Atomic orbital electron populations 1.22425 0.98047 1.02803 1.01794 1.22282 0.92920 0.89565 1.03802 1.62177 1.59764 1.02333 1.00513 1.20406 0.97137 0.97761 0.84849 1.23265 0.91531 0.98935 0.99453 1.22385 1.02663 1.02997 0.97518 1.24502 0.87625 0.97465 1.00028 1.20341 1.04513 0.95339 0.93072 1.84868 1.36868 1.39871 1.35121 1.73886 1.18033 1.13767 0.99093 1.21951 0.98309 0.94410 0.89363 0.92128 1.21930 1.02288 0.94544 1.01963 1.21318 0.82484 0.99627 0.96200 1.45829 1.08480 1.53605 1.29910 1.20255 0.89550 0.77506 0.81153 1.90686 1.65189 1.49815 1.34530 1.23257 0.94096 1.04828 1.05103 1.84729 1.09940 1.64501 1.32548 1.22333 0.90199 1.37796 1.16363 0.89411 1.24717 0.94186 0.95018 0.97451 1.69942 1.04224 1.39709 1.37967 0.86730 0.80834 0.81544 0.82703 1.19262 1.20004 1.15917 0.91742 0.92205 0.92618 0.90562 0.89531 0.88598 0.92142 0.81581 0.89477 0.89676 0.89105 0.91277 0.92331 0.91567 0.91193 0.91338 0.75792 0.88619 0.88595 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 9.23 37.15 0.34 -0.98 16 2 C 0.04 0.38 5.34 -3.83 -0.02 0.36 16 3 N -0.52 -4.61 4.07 -228.10 -0.93 -5.54 16 4 C 0.13 1.01 5.10 -4.98 -0.03 0.98 16 5 C 0.03 0.27 5.88 -82.10 -0.48 -0.22 16 6 C -0.23 -1.78 10.05 -39.38 -0.40 -2.18 16 7 C -0.03 -0.25 7.49 -35.30 -0.26 -0.52 16 8 C -0.08 -0.28 10.45 36.01 0.38 0.10 16 9 O 0.10 1.08 11.20 17.18 0.19 1.27 16 10 N -0.34 -4.11 12.07 33.42 0.40 -3.71 16 11 C 0.07 0.55 1.82 -67.71 -0.12 0.43 16 12 H 0.06 0.42 6.60 -51.93 -0.34 0.07 16 13 C -0.15 -1.13 8.90 37.16 0.33 -0.80 16 14 C 0.13 1.42 4.55 -4.04 -0.02 1.40 16 15 N -0.72 -9.72 5.06 -60.29 -0.31 -10.02 16 16 C 0.53 9.71 7.85 -10.99 -0.09 9.63 16 17 O -0.53 -11.55 15.86 5.56 0.09 -11.46 16 18 C -0.12 -2.48 6.16 36.01 0.22 -2.26 16 19 S -0.14 -3.74 18.55 -107.50 -1.99 -5.73 16 20 C -0.52 -15.33 10.04 30.94 0.31 -15.02 16 21 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 22 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -27.12 13.97 55.49 0.78 -26.35 16 24 Si 0.86 22.19 27.74 -169.99 -4.71 17.48 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.41 6.44 -51.93 -0.33 0.08 16 30 H 0.05 0.33 6.52 -51.93 -0.34 -0.01 16 31 H 0.08 0.75 6.36 -51.93 -0.33 0.41 16 32 H 0.09 0.96 6.17 -51.93 -0.32 0.64 16 33 H 0.10 0.76 6.02 -51.93 -0.31 0.44 16 34 H 0.06 0.38 6.26 -51.93 -0.33 0.06 16 35 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.61 7.13 -51.93 -0.37 0.24 16 40 H 0.06 0.38 6.30 -51.93 -0.33 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.82 6.64 -51.94 -0.34 0.47 16 44 H 0.41 4.98 7.28 -40.82 -0.30 4.68 16 45 H 0.10 1.86 8.14 -51.91 -0.42 1.44 16 46 H 0.10 1.84 8.14 -51.92 -0.42 1.41 16 47 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -35.55 389.06 -7.58 -43.13 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.03 Total: 1.42 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 0.07 Total: -6.35 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.05 Total: -45.62 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.28 Total: -10.19 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.55 -7.58 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151965054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.879 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds