Wall clock time and date at job start Wed Apr 1 2020 00:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46894 * 109.47440 * 2 1 4 4 C 1.46900 * 110.99774 * 297.88383 * 3 2 1 5 5 C 1.50698 * 109.47374 * 297.04085 * 4 3 2 6 6 C 1.41375 * 126.80057 * 95.32733 * 5 4 3 7 7 C 1.35448 * 103.98844 * 180.02562 * 6 5 4 8 8 C 1.50702 * 126.78139 * 179.97438 * 7 6 5 9 9 O 1.34039 * 106.44396 * 0.02562 * 7 6 5 10 10 N 1.20920 * 111.56869 * 359.70894 * 9 7 6 11 11 C 1.46896 * 111.00152 * 61.83635 * 3 2 1 12 12 H 1.08997 * 109.47461 * 294.30942 * 11 3 2 13 13 C 1.52999 * 109.47509 * 174.30946 * 11 3 2 14 14 C 1.53002 * 109.47054 * 54.30703 * 11 3 2 15 15 N 1.46504 * 109.47009 * 54.29905 * 14 11 3 16 16 C 1.34773 * 119.99938 * 184.55921 * 15 14 11 17 17 O 1.21282 * 120.00002 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99829 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.46961 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99973 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00312 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00503 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99601 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47370 * 89.99955 * 24 22 20 26 26 H 1.48507 * 109.47097 * 209.99913 * 24 22 20 27 27 H 1.48503 * 109.47522 * 329.99852 * 24 22 20 28 28 H 1.09002 * 109.47507 * 182.51442 * 1 2 3 29 29 H 1.08999 * 109.47435 * 302.51816 * 1 2 3 30 30 H 1.09004 * 109.47272 * 62.51885 * 1 2 3 31 31 H 1.09001 * 109.47107 * 239.99785 * 2 1 3 32 32 H 1.09001 * 109.47356 * 120.00333 * 2 1 3 33 33 H 1.09005 * 109.47385 * 177.04276 * 4 3 2 34 34 H 1.08996 * 109.47272 * 57.04343 * 4 3 2 35 35 H 1.07998 * 128.00955 * 0.04600 * 6 5 4 36 36 H 1.08999 * 109.47168 * 89.99925 * 8 7 6 37 37 H 1.08996 * 109.47247 * 210.00365 * 8 7 6 38 38 H 1.09002 * 109.46792 * 330.00202 * 8 7 6 39 39 H 1.09003 * 109.47273 * 299.99945 * 13 11 3 40 40 H 1.09000 * 109.47315 * 59.99871 * 13 11 3 41 41 H 1.09002 * 109.47635 * 180.02562 * 13 11 3 42 42 H 1.08998 * 109.47201 * 174.29251 * 14 11 3 43 43 H 1.08988 * 109.47393 * 294.29672 * 14 11 3 44 44 H 0.96999 * 119.99750 * 4.55763 * 15 14 11 45 45 H 1.09001 * 109.47085 * 299.99703 * 18 16 15 46 46 H 1.08994 * 109.47290 * 60.00114 * 18 16 15 47 47 H 0.96996 * 119.99943 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5904 2.0950 -1.2122 5 6 2.1951 1.4325 -2.4232 6 6 1.5893 0.4539 -3.2442 7 6 2.5291 0.1859 -4.1820 8 6 2.4138 -0.7946 -5.3206 9 8 3.5825 0.9641 -3.8967 10 7 3.3770 1.6510 -2.9230 11 6 1.5849 2.0970 1.2090 12 1 0.4998 2.2000 1.1997 13 6 2.2284 3.4847 1.2428 14 6 2.0115 1.3066 2.4476 15 7 3.4529 1.0508 2.3911 16 6 4.0395 0.2880 3.3347 17 8 3.3741 -0.1862 4.2310 18 6 5.5223 0.0253 3.2768 19 16 6.0040 -1.0240 4.6708 20 6 7.7329 -1.1672 4.3628 21 1 8.1720 -0.6736 3.5084 22 6 8.5309 -1.9135 5.2188 23 7 9.8226 -2.0201 4.9891 24 14 7.7716 -2.7667 6.6970 25 1 7.3380 -4.1335 6.3109 26 1 8.7761 -2.8556 7.7872 27 1 6.5973 -1.9894 7.1681 28 1 -0.3634 -1.0267 0.0451 29 1 -0.3634 0.5524 0.8665 30 1 -0.3634 0.4742 -0.9117 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9216 3.1323 -1.1622 34 1 0.5034 2.0639 -1.2859 35 1 0.6049 0.0206 -3.1465 36 1 1.9998 -0.2904 -6.1938 37 1 3.4010 -1.1884 -5.5624 38 1 1.7571 -1.6143 -5.0291 39 1 3.3136 3.3818 1.2522 40 1 1.9245 4.0478 0.3604 41 1 1.9062 4.0130 2.1402 42 1 1.7797 1.8823 3.3437 43 1 1.4751 0.3584 2.4761 44 1 3.9851 1.4304 1.6744 45 1 5.7657 -0.4792 2.3417 46 1 6.0613 0.9712 3.3304 47 1 10.3802 -2.5413 5.5876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151965054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:15 Heat of formation + Delta-G solvation = 4.481413 kcal Electronic energy + Delta-G solvation = -27585.182979 eV Core-core repulsion = 23703.908914 eV Total energy + Delta-G solvation = -3881.274065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.85581 -40.99670 -39.70927 -36.16529 -34.80366 -34.68030 -34.12714 -32.98963 -31.36954 -30.14783 -28.61440 -27.94808 -27.74775 -26.48103 -24.15788 -23.74450 -21.90870 -21.25420 -20.05868 -19.85135 -18.62442 -18.13562 -17.91416 -17.62420 -17.14886 -16.93247 -16.54490 -16.29041 -15.88486 -15.68449 -15.11310 -14.95623 -14.80047 -14.53787 -14.43091 -14.24804 -13.96644 -13.87894 -13.56050 -13.42928 -13.34963 -13.24419 -13.13213 -13.01309 -12.91024 -12.68918 -12.56700 -12.31383 -12.06721 -11.87554 -11.74581 -11.59893 -11.18025 -11.04844 -10.99536 -10.55825 -10.19749 -10.05850 -9.31474 -9.00465 -8.52427 -6.23463 0.58533 0.98319 1.25578 1.30777 1.46276 1.55947 1.59337 2.23580 2.28992 2.30446 2.70642 2.85506 2.90500 3.24127 3.58740 3.66549 3.91273 3.96497 4.06824 4.16359 4.20132 4.23225 4.28166 4.31582 4.36202 4.45362 4.53150 4.56852 4.63368 4.69210 4.73359 4.74354 4.84173 4.92071 4.93423 5.01691 5.05995 5.10481 5.27156 5.29467 5.36407 5.45599 5.69740 5.98610 6.03441 6.10251 6.51273 6.92256 7.22156 7.39331 8.60404 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.002541 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.829462 B =11015.873539 C =12229.820477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 N -0.536 5.536 4 C 0.129 3.871 5 C 0.023 3.977 6 C -0.237 4.237 7 C -0.034 4.034 8 C -0.075 4.075 9 O 0.075 5.925 10 N -0.387 5.387 11 C 0.079 3.921 12 H 0.085 0.915 13 C -0.148 4.148 14 C 0.126 3.874 15 N -0.699 5.699 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.112 4.112 19 S -0.169 6.169 20 C -0.531 4.531 21 H 0.058 0.942 22 C 0.044 3.956 23 N -0.918 5.918 24 Si 0.917 3.083 25 H -0.261 1.261 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.191 0.809 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.414 0.586 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.384 8.573 -21.229 34.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.081 4.081 3 N -0.262 5.262 4 C 0.002 3.998 5 C -0.137 4.137 6 C -0.259 4.259 7 C -0.097 4.097 8 C -0.132 4.132 9 O 0.011 5.989 10 N -0.094 5.094 11 C -0.029 4.029 12 H 0.103 0.897 13 C -0.206 4.206 14 C 0.002 3.998 15 N -0.352 5.352 16 C 0.320 3.680 17 O -0.444 6.444 18 C -0.263 4.263 19 S 0.058 5.942 20 C -0.678 4.678 21 H 0.076 0.924 22 C -0.161 4.161 23 N -0.556 5.556 24 Si 0.739 3.261 25 H -0.186 1.186 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.209 0.791 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.252 0.748 45 H 0.122 0.878 46 H 0.127 0.873 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.784 8.549 -19.401 32.615 hybrid contribution 0.151 -0.217 -0.801 0.844 sum -24.634 8.333 -20.202 32.930 Atomic orbital electron populations 1.22352 0.96084 1.03197 1.02685 1.22143 0.94494 0.89402 1.02066 1.62114 1.60577 1.02410 1.01121 1.20467 0.98242 0.97364 0.83737 1.23679 0.91140 0.99040 0.99824 1.22705 1.03625 1.02597 0.96969 1.25258 0.86728 0.96995 1.00730 1.20547 1.05224 0.95038 0.92355 1.84811 1.38199 1.40623 1.35237 1.73877 1.19668 1.15525 1.00351 1.21889 0.99571 0.93854 0.87620 0.89746 1.21930 1.01219 0.94356 1.03079 1.21526 0.80263 0.99927 0.98049 1.45649 1.09826 1.51402 1.28345 1.19841 0.88395 0.78069 0.81672 1.90674 1.65538 1.51829 1.36326 1.23251 0.96117 1.04162 1.02721 1.84585 1.07252 1.66428 1.35935 1.22469 0.92341 1.37507 1.15521 0.92368 1.25608 0.94631 0.95648 1.00229 1.70022 1.05529 1.40674 1.39411 0.85831 0.80265 0.80433 0.79604 1.18589 1.18183 1.15967 0.91636 0.91898 0.91051 0.91532 0.92005 0.88539 0.89889 0.79146 0.87713 0.89494 0.87332 0.92817 0.90977 0.90745 0.90940 0.91931 0.74845 0.87778 0.87339 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.23 71.98 0.66 -1.38 16 2 C 0.05 0.77 5.34 86.30 0.46 1.23 16 3 N -0.54 -8.49 4.07 -875.57 -3.56 -12.05 16 4 C 0.13 1.77 5.10 85.56 0.44 2.21 16 5 C 0.02 0.41 5.88 43.58 0.26 0.66 16 6 C -0.24 -3.19 10.05 22.40 0.23 -2.96 16 7 C -0.03 -0.48 7.49 25.04 0.19 -0.29 16 8 C -0.07 -0.41 10.45 71.24 0.74 0.33 16 9 O 0.08 1.63 11.20 71.64 0.80 2.43 16 10 N -0.39 -9.25 12.07 -49.57 -0.60 -9.85 16 11 C 0.08 1.08 1.82 44.92 0.08 1.17 16 12 H 0.08 0.85 6.60 -2.39 -0.02 0.83 16 13 C -0.15 -1.90 8.90 71.98 0.64 -1.26 16 14 C 0.13 2.58 4.55 86.38 0.39 2.98 16 15 N -0.70 -18.06 5.06 -463.06 -2.34 -20.40 16 16 C 0.54 19.33 7.85 87.66 0.69 20.02 16 17 O -0.56 -24.56 15.86 -3.04 -0.05 -24.61 16 18 C -0.11 -4.52 6.16 71.24 0.44 -4.08 16 19 S -0.17 -8.81 18.55 -56.49 -1.05 -9.85 16 20 C -0.53 -31.95 10.04 67.95 0.68 -31.27 16 21 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 22 C 0.04 2.65 5.50 84.86 0.47 3.12 16 23 N -0.92 -57.25 13.97 21.65 0.30 -56.95 16 24 Si 0.92 45.89 27.74 68.60 1.90 47.80 16 25 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.67 6.44 -2.39 -0.02 0.66 16 30 H 0.07 0.58 6.52 -2.38 -0.02 0.56 16 31 H 0.07 1.23 6.36 -2.39 -0.02 1.21 16 32 H 0.06 1.33 6.17 -2.39 -0.01 1.32 16 33 H 0.10 1.32 6.02 -2.38 -0.01 1.30 16 34 H 0.08 0.76 6.26 -2.39 -0.01 0.74 16 35 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.05 0.86 7.13 -2.39 -0.02 0.85 16 40 H 0.07 0.75 6.30 -2.39 -0.02 0.74 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.41 6.64 -2.39 -0.02 1.40 16 44 H 0.41 9.70 7.28 -92.71 -0.68 9.02 16 45 H 0.10 4.04 8.14 -2.40 -0.02 4.02 16 46 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 47 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -78.56 389.06 2.06 -76.50 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.28 Total: 16.52 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 6.37 Total: -9.53 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -6.20 Total: -99.25 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.75 Total: -22.18 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.85 kcal Total: -78.56 2.06 -76.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151965054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.984 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds