Wall clock time and date at job start Wed Apr 1 2020 00:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47402 * 2 1 4 4 C 1.46897 * 110.99526 * 294.73179 * 3 2 1 5 5 C 1.50694 * 109.47653 * 294.82889 * 4 3 2 6 6 N 1.30252 * 125.62208 * 92.59416 * 5 4 3 7 7 C 1.34479 * 108.70429 * 179.97438 * 6 5 4 8 8 C 1.34332 * 107.66662 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.44531 * 179.97438 * 8 7 6 10 10 O 1.33976 * 125.61754 * 272.57833 * 5 4 3 11 11 C 1.46902 * 110.99777 * 58.68541 * 3 2 1 12 12 H 1.08997 * 109.47063 * 290.88162 * 11 3 2 13 13 C 1.53007 * 109.46699 * 170.88583 * 11 3 2 14 14 C 1.52995 * 109.47089 * 50.88438 * 11 3 2 15 15 N 1.46494 * 109.47395 * 54.23831 * 14 11 3 16 16 C 1.34771 * 120.00418 * 183.83158 * 15 14 11 17 17 O 1.21285 * 119.99683 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00539 * 179.97438 * 16 15 14 19 19 S 1.80995 * 109.47281 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00056 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99984 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00286 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99542 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00229 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47124 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47341 * 120.00027 * 24 22 20 27 27 H 1.48500 * 109.47025 * 240.00290 * 24 22 20 28 28 H 1.08999 * 109.47370 * 183.00659 * 1 2 3 29 29 H 1.09004 * 109.47251 * 303.00357 * 1 2 3 30 30 H 1.08997 * 109.47016 * 63.00531 * 1 2 3 31 31 H 1.08997 * 109.46980 * 239.99504 * 2 1 3 32 32 H 1.09006 * 109.46983 * 120.00074 * 2 1 3 33 33 H 1.09005 * 109.46898 * 174.82508 * 4 3 2 34 34 H 1.08997 * 109.47276 * 54.83155 * 4 3 2 35 35 H 1.07999 * 126.16478 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47087 * 270.00173 * 9 8 7 37 37 H 1.09007 * 109.46567 * 29.99938 * 9 8 7 38 38 H 1.08997 * 109.47232 * 149.99867 * 9 8 7 39 39 H 1.08997 * 109.47020 * 299.99606 * 13 11 3 40 40 H 1.08996 * 109.46996 * 60.00151 * 13 11 3 41 41 H 1.08997 * 109.46748 * 179.97438 * 13 11 3 42 42 H 1.09005 * 109.47086 * 174.23615 * 14 11 3 43 43 H 1.08999 * 109.47307 * 294.23364 * 14 11 3 44 44 H 0.97003 * 119.99904 * 3.82904 * 15 14 11 45 45 H 1.08997 * 109.46921 * 299.99782 * 18 16 15 46 46 H 1.09001 * 109.46772 * 59.99925 * 18 16 15 47 47 H 0.97001 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6542 2.0725 -1.2456 5 6 2.3633 1.4219 -2.4053 6 7 1.8850 0.4630 -3.1457 7 6 2.7989 0.1413 -4.0783 8 6 3.8671 0.9346 -3.8929 9 6 5.1368 0.9305 -4.7046 10 8 3.5897 1.7347 -2.8448 11 6 1.5232 2.1189 1.1717 12 1 0.4487 2.2742 1.0746 13 6 2.2283 3.4739 1.2611 14 6 1.8092 1.3104 2.4387 15 7 3.2361 0.9838 2.4979 16 6 3.7088 0.2066 3.4923 17 8 2.9530 -0.2221 4.3384 18 6 5.1765 -0.1298 3.5529 19 16 5.4958 -1.1803 4.9918 20 6 7.2342 -1.4121 4.8218 21 1 7.7623 -0.9533 3.9989 22 6 7.9253 -2.1835 5.7459 23 7 7.2819 -2.7415 6.7496 24 14 9.7683 -2.4286 5.5660 25 1 10.2494 -1.7016 4.3637 26 1 10.4576 -1.9029 6.7716 27 1 10.0630 -3.8766 5.4191 28 1 -0.3634 -1.0262 0.0539 29 1 -0.3634 0.5598 0.8619 30 1 -0.3633 0.4665 -0.9157 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.9477 3.1203 -1.1819 34 1 0.5766 2.0055 -1.3949 35 1 2.6932 -0.6179 -4.8390 36 1 5.8487 0.2339 -4.2619 37 1 4.9139 0.6222 -5.7261 38 1 5.5659 1.9324 -4.7129 39 1 3.3028 3.3185 1.3582 40 1 2.0245 4.0498 0.3584 41 1 1.8596 4.0186 2.1302 42 1 1.5344 1.8983 3.3146 43 1 1.2261 0.3897 2.4216 44 1 3.8406 1.3270 1.8214 45 1 5.4657 -0.6590 2.6449 46 1 5.7566 0.7890 3.6384 47 1 7.7649 -3.2802 7.3956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151965331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:04 Heat of formation + Delta-G solvation = -6.348827 kcal Electronic energy + Delta-G solvation = -27576.064345 eV Core-core repulsion = 23694.320646 eV Total energy + Delta-G solvation = -3881.743699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.58202 -39.89836 -38.43360 -35.06382 -34.53463 -32.92350 -32.39682 -32.06833 -30.72758 -29.13882 -27.79127 -26.33555 -25.44929 -25.07125 -23.17082 -22.46305 -21.23275 -20.39323 -19.59608 -17.82412 -17.37951 -17.12648 -16.58876 -16.27453 -15.88939 -15.56724 -14.97417 -14.85276 -14.77709 -14.66945 -14.36442 -13.79750 -13.65747 -13.46773 -13.29738 -13.09680 -13.05217 -12.91521 -12.72606 -12.53186 -12.48750 -12.29578 -11.93975 -11.79055 -11.56303 -11.53280 -11.04964 -11.00783 -10.97806 -10.86499 -10.77457 -10.72158 -9.76703 -9.32882 -9.04523 -9.00710 -8.74683 -8.69762 -8.18200 -6.45392 -6.18627 -3.88291 1.13993 2.30121 2.41253 3.10321 3.19692 3.23634 3.30486 3.35287 3.47101 3.78435 3.92275 4.23754 4.35313 4.46666 4.64731 4.66460 4.71324 4.84114 4.91051 4.98720 5.03202 5.04134 5.14784 5.16588 5.23028 5.24936 5.25375 5.42396 5.51112 5.55084 5.60062 5.62665 5.75527 5.77241 5.78748 5.85814 5.96167 5.97814 6.00233 6.09736 6.21984 6.56143 6.62132 6.79412 7.47535 7.63288 7.87380 8.38919 8.72770 9.26925 10.88899 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.002643 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.941643 B =10590.953333 C =12285.045839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.041 3.959 3 N -0.527 5.527 4 C 0.143 3.857 5 C 0.200 3.800 6 N -0.476 5.476 7 C -0.046 4.046 8 C -0.045 4.045 9 C -0.069 4.069 10 O -0.192 6.192 11 C 0.069 3.931 12 H 0.064 0.936 13 C -0.149 4.149 14 C 0.127 3.873 15 N -0.726 5.726 16 C 0.530 3.470 17 O -0.523 6.523 18 C -0.152 4.152 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.182 0.818 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.404 0.596 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.347 12.835 -23.274 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.086 4.086 3 N -0.253 5.253 4 C 0.014 3.986 5 C -0.007 4.007 6 N -0.206 5.206 7 C -0.185 4.185 8 C -0.099 4.099 9 C -0.126 4.126 10 O -0.079 6.079 11 C -0.039 4.039 12 H 0.082 0.918 13 C -0.207 4.207 14 C 0.002 3.998 15 N -0.382 5.382 16 C 0.316 3.684 17 O -0.398 6.398 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.199 0.801 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.240 0.760 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.660 11.783 -21.554 27.636 hybrid contribution 2.123 0.622 -1.706 2.793 sum -10.538 12.405 -23.261 28.390 Atomic orbital electron populations 1.22381 0.97635 1.03023 1.01716 1.22323 0.93458 0.88828 1.04035 1.62198 1.59945 1.02854 1.00291 1.20449 0.96826 0.97671 0.83605 1.25902 0.81321 0.95289 0.98167 1.70435 1.31506 1.12574 1.06066 1.23052 0.90626 1.03385 1.01442 1.23508 1.00227 0.94773 0.91370 1.20288 0.90598 1.04177 0.97559 1.84407 1.33194 1.51559 1.38708 1.21962 0.98293 0.94225 0.89425 0.91799 1.21930 1.02000 0.94794 1.01972 1.21339 0.83446 0.99239 0.95779 1.45872 1.08795 1.53577 1.29933 1.20283 0.90169 0.77363 0.80549 1.90696 1.58860 1.51682 1.38560 1.23507 0.94363 1.05246 1.07113 1.85368 1.09402 1.61077 1.27648 1.22918 0.93038 1.37086 1.15133 0.90928 1.24990 0.99299 0.94835 0.94511 1.70033 1.36130 1.31206 1.12980 0.86124 0.83135 0.78079 0.78202 1.19625 1.20589 1.20595 0.91703 0.92349 0.92278 0.90152 0.89392 0.87661 0.89936 0.80135 0.89546 0.89056 0.90329 0.91270 0.92380 0.91421 0.91068 0.91185 0.76029 0.89370 0.89372 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 9.03 37.16 0.34 -1.33 16 2 C 0.04 0.42 5.33 -3.83 -0.02 0.40 16 3 N -0.53 -4.70 4.04 -228.09 -0.92 -5.62 16 4 C 0.14 1.13 5.27 -4.98 -0.03 1.11 16 5 C 0.20 2.09 6.89 -12.95 -0.09 2.00 16 6 N -0.48 -5.38 10.53 -11.10 -0.12 -5.49 16 7 C -0.05 -0.45 11.80 -17.77 -0.21 -0.65 16 8 C -0.05 -0.41 7.39 -35.69 -0.26 -0.68 16 9 C -0.07 -0.37 10.43 36.00 0.38 0.01 16 10 O -0.19 -2.10 10.78 5.34 0.06 -2.05 16 11 C 0.07 0.55 1.69 -67.71 -0.11 0.43 16 12 H 0.06 0.43 6.73 -51.93 -0.35 0.08 16 13 C -0.15 -1.03 9.00 37.16 0.33 -0.70 16 14 C 0.13 1.43 4.43 -4.05 -0.02 1.41 16 15 N -0.73 -9.84 4.80 -60.30 -0.29 -10.13 16 16 C 0.53 10.02 7.85 -10.99 -0.09 9.93 16 17 O -0.52 -11.95 15.86 5.55 0.09 -11.86 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 24 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.47 5.95 -51.93 -0.31 0.16 16 30 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 31 H 0.08 0.96 6.52 -51.93 -0.34 0.62 16 32 H 0.09 1.08 6.15 -51.93 -0.32 0.76 16 33 H 0.11 0.66 6.07 -51.93 -0.32 0.34 16 34 H 0.08 0.59 6.28 -51.93 -0.33 0.26 16 35 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.55 7.15 -51.93 -0.37 0.18 16 40 H 0.06 0.32 6.35 -51.93 -0.33 -0.01 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.87 6.13 -51.93 -0.32 0.55 16 44 H 0.40 4.83 7.29 -40.82 -0.30 4.54 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -35.96 391.43 -8.11 -44.07 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.97 Total: 2.28 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.64 Total: -4.09 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.59 Total: -46.95 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.15 Total: -13.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.96 -8.11 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151965331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.726 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds